Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_07g0004580 OGI:07011440 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr07:3793044-3796572
Gene Symbol -
DNA seq

GTAAAGTAGTGCAGGCAAGGCGAGAAGGGCAAGAAGGAGGAGGGAGGAGGGATGGTGAAGAAGAAGGAGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCGCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCATTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGTATCCTATATCTATCTATCTATCTATCTATTCCGTCAGGTAGGTGAGATGGTATGATATGTATGTTGTGGGTGGGTAATGAATGTTTCAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGAGCAGGTCCACCAAGGGCGTTGTCTGCGAGGACGTCTTCGAGAGCCTGGTTACTTCAAACTTCACATCTTTGCTCTGCCTGCCCTGTATCTATCTTGGAAGTGGAACTTGCATCCGCAGAATTGCTGCTATGCTCGTCCCTTTTCTCTGGGGTGTTATTGGTAACTACTTATGCTGCTGTTTTATTTGGCAGATTGTTTTTTCTGAAGCCTGGTGGATTGGAACAAAAGAAGAAAACCCACAAGAACTGAAACTGGATTTTCCAAAAGAGTTCCAGAATGTGCGTGTGCTCTCCATCCATATATGTTCTTAATTTTCGCTTCTTCTACGACGCTACTGTGCCTCTCATCTCATGTGCTTCTTCATTTCAAACTGGTAGGATGGGGCTGTTGCAGATTCTGATTTTAAAGGTGGAGCAGGTGCTTCCTGTGATGAAGCTGTTACCATCAATAAACCGCCAAAGGAAACCACCACAGGATCCCTTTCCCCAAAGATTGAATCTGACATTGATTCTTCCGAGGATTCAGACCTTAAGGACGAGGATAACACACAAAGCACTAGTCAAGCACCTTCAGTTAGGCAGTCTGCTAGAACTGCTGGGAAAGCCTTGAAGTAAGTCAGTTTCACCCTTTTCTGTTGCTCTCTCGGATAAACAGAAAAGCACACGGACTCTAGTTGTTGCTTAGCAGCTGAAAGATTGCCTACTACCTGTATTTATTTGGCTTAACGGCTAATGTTTCTAAAAACAAATATATTCATCTCCCACCCACCCAAAAAAAGGCAAAGAATAAAAAGGTATACTTGATAGATCCCTCGCTCTTTATGCAGGTATACTGAGATATCCTCTGGAGACGATTCATCTGATAATGACGATGAGATTGATGTCCCTGAGGACATGGATGAGAAGGTAGTGATACCGAATTTAATTTCCCACGCTTTTGTTGCATATAACGTAAAAGTAGCAGCATATAATGTAAAAGTTGCAGTTTTGTGAAAATTTCCCACGCTATTGTTGCAGGAAACTGAAACATGTCGCTTATGTTGCAGCAAACTGATAGTTTTGTCACTAAAGTTGCAGTTTTCTGAAATTTACTCAATTTTATAAGATTCAAATATATGAATCAATGTCTATCAAGCTTTTATCTTTTGTAAATAATTTTATTGTGTTTATTTGCTTTCTTCGTTTGAAGCAGGTGAAGAGTCCGGCAGTTAAGAATGAATCCCAAAGTGAAGACATTAAACCTGCAGATTCATCTGCGCAGCCTATCTCAGCTAAGAAGGAGCCACTCGTTCAGGCTACTCTGTCTAGCATGTTTAAAAAAGCAGAAGAAAAAAAGGTGGAAATTCATACCTGTTATTATAATAGTTTCTCTCCTTGTGATAGTGGGCAGTTATACCCTTAACTTCGATATAATGTTTGCTTGATGCATTAATTGAACCAACTTCACAACATACCTCTTTTTTCGTATGTGTGTTTTGAACATTATCTGTTTTCATGCCTGGTACAAATAAATTAGTTAAGCATCTGACAAAAGGATTTCTATTTCAGAGATGTACTAGAAGCCCGAAAGGATCTCCAGCAACAAAAGGTTCTTCATATTTACGCAATTCTAGGTTTCTTGTGTTTTCCTTTATTACACAACGAAAATTCCTTTTGATTGGACTTGTGATTGGCATTGTTCTACAGGACCTGCTGCTAAGAAGCAGCGAGCAAGTCCAGAGGAAAAACATCCAACAGGGAAGAAGAGTGGTAAGTGCAGTAGCAAGTCTGTTGTTAGAAGCATCTAATAGACCTTGGTGCGATTACATTTGTTTTAAGCCTCTGAAGGCCTTCTTCAATGGAGAAGACTTGTTCTAAAATAATCCAAAGGCTTTGGGAGGCTTACTTGAGAAGCTTTCAGCTTTTGTCTATGTAAGGGGCATTTAAAATATTAATCCATTTCATGAAGCTTTAGGACCATCTCAAGCCTGTCGAATCGGAATAAATGATGGAATTAACATCTATTGTGGTGGCTCTATACTAAATATGCTATTTGAATTTTACAAGACTTGATATTGCTGGGTAAAAGCTGTGATGCATGGGGGGAAACAAATGCATTTTAGTGGCTCTTAGTGCAATGTGCAACGATCTATCAGCTTTTCTTTAACTGAGTACATCAGTACATGTTAGTGTTCTTCATATGAAGCTGACAATTGTATTTACATGGATGTAGCTGGCAGAAGTCAGAAAAAGAGAAAAACACAGGTACTTTACTTAGCAACAATGATCAGGGATTTTAATTTGAATGTCGCCCATTGTTTACTTTGCTGATTGCCTTTGCCCTCATTTTTCTGTCACAGGTAGAAGATGACGAAATTGAAGTGCTCTCAAGTTCCTCCCAGGTGATTGTTTTTCTGATAGCTACAGTGTAGTAGATTGGTACATTATGGCCATTGTTCTTGTTGTTGTTGTTGTTGTTATGAGGTTGTGCCTTCCTCCCAGCTAATCCTAACAGCATATGACAGGATAACAATGTGGACGATGATAGCGATGAAGACTGGGCTGAGTGATGTGCAGCTGAAGTTGAAAGGAATGTAGCACTCGGTGATGAAGAGTGAAGGATGCAAGATTGTGGGCAATTGTTTTCTTTTGGGGCAATATCACAATTGATGTGTTTGAGGAGCTTAGGTTCTGACCTGACCATTGATGAGATATATCATCATAGTCTTTTCATCGTACTGGTGAAATTGAAAACCGAGAAGTGTGATCTGTTAGCACTAGATTTATTATTTATTTGACTTGTTGTAATGTAACATAAACAAGAGCTGATAAATCATTGTTAGGGTCTGCAATGCAAATTAGTACGGCAATTGCAGATATAAACTATACCATTGATGAAGAAAATGATTGTTGTGTATTTATTTATGGTATTGATAAATTAAACGGTTTTATCTGAACAACTGAGAGGGTCCTGGGGCTTAAGGCAAACAGGCCTGTTTTTGTAAGAGAAAAAGCTGACCCCGAGCTTGTATGTTC

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CDS seq

ATGGTGAAGAAGAAGGAGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCGCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCATTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGAGCAGGTCCACCAAGGGCGTTGTCTGCGAGGACGTCTTCGAGAGCCTGGTTACTTCAAACTTCACATCTTTGCTCTGCCTGCCCTGTATCTATCTTGGAAGTGGAACTTGCATCCGCAGAATTGCTGCTATGCTCGTCCCTTTTCTCTGGGGTGTTATTGGTAACTACTTATGCTGCTGTTTTATTTGGCAGATTGTTTTTTCTGAAGCCTGGTGGATTGGAACAAAAGAAGAAAACCCACAAGAACTGAAACTGGATTTTCCAAAAGAGTTCCAGAATGATGGGGCTGTTGCAGATTCTGATTTTAAAGGTGGAGCAGGTGCTTCCTGTGATGAAGCTGTTACCATCAATAAACCGCCAAAGGAAACCACCACAGGATCCCTTTCCCCAAAGATTGAATCTGACATTGATTCTTCCGAGGATTCAGACCTTAAGGACGAGGATAACACACAAAGCACTAGTCAAGCACCTTCAGTTAGGCAGTCTGCTAGAACTGCTGGGAAAGCCTTGAAGTATACTGAGATATCCTCTGGAGACGATTCATCTGATAATGACGATGAGATTGATGTCCCTGAGGACATGGATGAGAAGGTGAAGAGTCCGGCAGTTAAGAATGAATCCCAAAGTGAAGACATTAAACCTGCAGATTCATCTGCGCAGCCTATCTCAGCTAAGAAGGAGCCACTCGTTCAGGCTACTCTGTCTAGCATGTTTAAAAAAGCAGAAGAAAAAAAGAGATGTACTAGAAGCCCGAAAGGATCTCCAGCAACAAAAGGACCTGCTGCTAAGAAGCAGCGAGCAAGTCCAGAGGAAAAACATCCAACAGGGAAGAAGAGTGCTGGCAGAAGTCAGAAAAAGAGAAAAACACAGGTAGAAGATGACGAAATTGAAGTGCTCTCAAGTTCCTCCCAGGATAACAATGTGGACGATGATAGCGATGAAGACTGGGCTGAGTGA

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Protein seq

MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMSRSTKGVVCEDVFESLVTSNFTSLLCLPCIYLGSGTCIRRIAAMLVPFLWGVIGNYLCCCFIWQIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKGGAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSAGRSQKKRKTQVEDDEIEVLSSSSQDNNVDDDSDEDWAE

Function DNA-binding protein RHL1 [UniProtKB/Swiss-Prot:O81242]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_07g0004580 OsAzu_07g0004580.01 Chr07 3793044 3796572 + NAM
CDS seq

ATGGTGAAGAAGAAGGAGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCGCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCATTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGAGCAGGTCCACCAAGGGCGTTGTCTGCGAGGACGTCTTCGAGAGCCTGGTTACTTCAAACTTCACATCTTTGCTCTGCCTGCCCTGTATCTATCTTGGAAGTGGAACTTGCATCCGCAGAATTGCTGCTATGCTCGTCCCTTTTCTCTGGGGTGTTATTGGTAACTACTTATGCTGCTGTTTTATTTGGCAGATTGTTTTTTCTGAAGCCTGGTGGATTGGAACAAAAGAAGAAAACCCACAAGAACTGAAACTGGATTTTCCAAAAGAGTTCCAGAATGATGGGGCTGTTGCAGATTCTGATTTTAAAGGTGGAGCAGGTGCTTCCTGTGATGAAGCTGTTACCATCAATAAACCGCCAAAGGAAACCACCACAGGATCCCTTTCCCCAAAGATTGAATCTGACATTGATTCTTCCGAGGATTCAGACCTTAAGGACGAGGATAACACACAAAGCACTAGTCAAGCACCTTCAGTTAGGCAGTCTGCTAGAACTGCTGGGAAAGCCTTGAAGTATACTGAGATATCCTCTGGAGACGATTCATCTGATAATGACGATGAGATTGATGTCCCTGAGGACATGGATGAGAAGGTGAAGAGTCCGGCAGTTAAGAATGAATCCCAAAGTGAAGACATTAAACCTGCAGATTCATCTGCGCAGCCTATCTCAGCTAAGAAGGAGCCACTCGTTCAGGCTACTCTGTCTAGCATGTTTAAAAAAGCAGAAGAAAAAAAGAGATGTACTAGAAGCCCGAAAGGATCTCCAGCAACAAAAGGACCTGCTGCTAAGAAGCAGCGAGCAAGTCCAGAGGAAAAACATCCAACAGGGAAGAAGAGTGCTGGCAGAAGTCAGAAAAAGAGAAAAACACAGGTAGAAGATGACGAAATTGAAGTGCTCTCAAGTTCCTCCCAGGATAACAATGTGGACGATGATAGCGATGAAGACTGGGCTGAGTGA

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Protein seq

MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMSRSTKGVVCEDVFESLVTSNFTSLLCLPCIYLGSGTCIRRIAAMLVPFLWGVIGNYLCCCFIWQIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKGGAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSAGRSQKKRKTQVEDDEIEVLSSSSQDNNVDDDSDEDWAE

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Gene Transcript Chromosome Start End Strand Source
OsAzu_07g0004580 OsAzu_07g0004580.02 Chr07 3793074 3796507 + NAM
CDS seq

ATGGTGAAGAAGAAGGAGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCGCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCATTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGAGCAGGTCCACCAAGGGCGTTGTCTGCGAGGACGTCTTCGAGAGCCTGGTTACTTCAAACTTCACATCTTTGCTCTGCCTGCCCTGTATCTATCTTGGAAGTGGAACTTGCATCCGCAGAATTGCTGCTATGCTCGTCCCTTTTCTCTGGGGTGTTATTGGTAACTACTTATGCTGCTGTTTTATTTGGCAGATTGTTTTTTCTGAAGCCTGGTGGATTGGAACAAAAGAAGAAAACCCACAAGAACTGAAACTGGATTTTCCAAAAGAGTTCCAGAATGATGGGGCTGTTGCAGATTCTGATTTTAAAGGTGGAGCAGGTGCTTCCTGTGATGAAGCTGTTACCATCAATAAACCGCCAAAGGAAACCACCACAGGATCCCTTTCCCCAAAGATTGAATCTGACATTGATTCTTCCGAGGATTCAGACCTTAAGGACGAGGATAACACACAAAGCACTAGTCAAGCACCTTCAGTTAGGCAGTCTGCTAGAACTGCTGGGAAAGCCTTGAAGTATACTGAGATATCCTCTGGAGACGATTCATCTGATAATGACGATGAGATTGATGTCCCTGAGGACATGGATGAGAAGGTGAAGAGTCCGGCAGTTAAGAATGAATCCCAAAGTGAAGACATTAAACCTGCAGATTCATCTGCGCAGCCTATCTCAGCTAAGAAGGAGCCACTCGTTCAGGCTACTCTGTCTAGCATGTTTAAAAAAGCAGAAGAAAAAAAGAGATGTACTAGAAGCCCGAAAGGATCTCCAGCAACAAAAGGACCTGCTGCTAAGAAGCAGCGAGCAAGTCCAGAGGAAAAACATCCAACAGGGAAGAAGAGTGGTAAGTGCAGTAGCAAGTCTGTTGTTAGAAGCATCTAA

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Protein seq

MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMSRSTKGVVCEDVFESLVTSNFTSLLCLPCIYLGSGTCIRRIAAMLVPFLWGVIGNYLCCCFIWQIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKGGAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSGKCSSKSVVRSI

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Gene Transcript Chromosome Start End Strand Source
OsAzu_07g0004580 OsAzu_07g0004580.03 Chr07 3793051 3796455 + IsoSeq
CDS seq

ATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCGCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCATTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGA

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Protein seq

MRRPTSGAASAPSPSLMAYSSAGSRRRRARRSRPPLPCRGCRAATSCAAAGSARAASSSHSPASSRPRLLPRAAASASSLILAPKILCSTSTSHRG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr07 3793495 3793836 + OsAzu_07g0004580.01,OsAzu_07g0004580.02 OsAzu_07g0004580.01,OsAzu_07g0004580.03,OsAzu_07g0004580.02 All
RI Chr07 3795244 3795801 + OsAzu_07g0004580.02 OsAzu_07g0004580.01,OsAzu_07g0004580.03,OsAzu_07g0004580.02 All

Expression

Leaf Root Panicle
FPKM 1.242455 12.277854 3.643198

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0172200 RBH 3.917219 2.023663 4.079774
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g07580 RBH 2.494954 1.214678 0.878825
Nipponbare | IRGSP 1.0 | RAP-db Os07g0172200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0004540 RBH 0.433621 3.880136 1.955332
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0004440 RBH 0.791322 6.908504 7.498724
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0004370 RBH 0.300581 0.321602 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0004470 RBH 11.469223 13.414010 14.582424
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0064000 RBH 9.557188 16.9421395 14.838715
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0004980 RBH 0.373023 0.312679 0.954542
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0067500 RBH 9.2168265 14.645027 28.9466445
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0004460 RBH 0.542096 0.211787 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0004450 RBH 1.111748 3.323952 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0004490 RBH 8.209051 14.593354 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0004570 RBH 1.051345 1.131428 1.561826
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0004450 RBH 0.606978 2.288301 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G004620 RBH 1.219334 4.347499 3.048000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0004420 RBH 1.080478 22.835897 7.502233
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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