Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0027040 | OGI:06081210 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:29650366-29653795 | ||||||||
| Gene Symbol | LRR-RLK1, OsLRR-RLK1, OsPSKR12, PSKR12 | ||||||||||
| DNA seq | atgcagctgcccaatttgccatgcagcagcagcaccaccaccaccaccaccaagttatctgtggctttctttcggcttcttgttatcctcctgctctcgtttgcctctccgaccagctcctgcacagagcaagaggagagctccctcatcggctttctagagggtctcttgccaggccacaacggcagcctcagcacgtcatgggtgaagggcatagactgctgcaaatgggaaggcatcaactgcagcagcgatggcacggtcacagatgtctcgttggcttccaagggcctccaagggcgcatctcgccatctctcggcaatcttactgggctgttgcacctcaacctgtctcacaacttactcaatggctacctaccaatggaattgttgttctccagaagtatcatcgttcttgacgtcagcttcaaccgcctggatggttctctgccagagttggagtcccctagtggtggttctcctctccaggtactgaatatctcgagcaattcatttacagggcagttctcatcaaaacaatgggaagtgatgaagaatattgtcgctcttaatgtaagcaacaacagctttacaggacagataccaccttctatatgcatcaactccccatcatttgctatccttgacctttgttacaaccaattcagtggcagtatttcctcagggctcggaaattgctccaagctgagagagttcaaggctggatacaacaactttagtggagctctccctgaagaactcttcagtgctacctcattggagcacctatctcttcctaataatgatttacaaggagttcttgatggttcccacatagtaaaactcgtcaagctgacagtccttgatctcggatcgactgggctcagtggcaacatcccagattctattggccaactaagcacattggaggagctccggttggacaacaacaacatgtctggtgagctgccatcagccctaggtaactgcacaaatctgagatatctcagcctcagaaacaataaatttgtgggagatcttagcaaagtcaattttacctggttgaatttgagaatcgcagatttctcaattaataacttcactggtacagttccagaaagcatattctcatgcagcaatctaattgcgttgcggctggctttcaacaagtttcatggccagttgtcaccaagaatgggtactctcaagtccctgtccttcttttcaataagtgataaccatttcacaaatatcacaaatgcacttcagatactcaggagctgcaagaaccttacgtcactgcttattggaaccaatttcaagggtgaaaccataccacaagatgaaacagttgatggttttgagaatcttcgggtactgaccatagactcttgtggagcaatggggcaaatccctccttggatatcaaagctcaaaaaactggaagtgttggatttatcaaacaatatgctcatcggagaaataccattttggattagagatatgcctgttcttttctatttagacataacaaacaacagtcttacaggggatatcccagttgcgttgatgaacttgccgatgctacaatcagggaagaatgctgcccagttggacccaaattttcttgaattgcctgtttattggacaccatcacgtcaataccgcttgctcaatgcttttcctaatgcattgaatctaggtaataatagtttcacaggagtgattccccctgagattggtcagttgaaaatgcttgatggcttcaatgtcagctttaacaggttatctggagaaataccacagcagatatgcaacctcacaaacctgcaattgctagatttatcaagcaatcagctcacaggtgaactaccggccgcactgactgatctgcacttcctttctaaattcaatgtttctaacaatgaactagaagggccagttccaactggaagacagtttgatacatttctcaattctagctatagtgggaatccaaagctatgtggccctatgctcagcaacctgtgtgattcagtaccaacacatgcatcctccatgaaacggcgcaacaagaaggccattattgcacttgcattaggtgtgttctttggagggattgccatccttttcttgctgggacgttttcttatatccatcagaagaacaagctctgtccaccaaaacaagagcagcaacaatggggacatagaagcagcttcattgagttctgtttcagagcacttgcacgacatgataaaaggaaccattttggtgatggtacctcaaggcaagggaggatcaaataatctcaaattcaaggatatcttgaaggccactaataactttgaccagcagaacattatcggatgtggaggtaatggtctagtctacaaggctgagctacccaatggatccaagcttgcaatcaagaagctcaacggtgaaatgtgtctgatggagagagaatttaccgcagaggtagaagcactctctatggcacaacatgacaatcttgtgccactatggggttactgcatccaaggaaactcaaggctcctcatatattcttacatggagaacggcagtctagatgagtggcttcacaacagagacaatggcaggccacttctcgactggccaacaaggctcaagattgcacaaggagcaagccggggcctttcatatatccataatatctgcaagcctcacattgttcaccgtgacatcaaatccagcaatatccttctcgacagagaattcagagcttgtgttgcggattttggccttgccagattgatccttccctatgacacacatgttacaactgaattaattggcactctgggatatattccacctgagtacagccaggcatgggtggctacactaagaggcgatatatacagttttggagtggtgctgcttgagctgctcacagggaagaggccagtccaggtcttgtccaagtcgaaggaacttgtccaatggacccgggagatgagatctcatggaaaggatactgaggtgttggatccagcactgagaggaagaggccatgaagagcaaatgctgaaggtgcttgatgtggcttgcaagtgtatcagccataatccttgcaagaggccaaccatccaagaagtggtctcctgcctggacaatgttgatgcagacctgcaggtgcagatgtagttaaaggagaacagatccatagacctggagatgcagagatgattttgtacttacagactaggtgtgtaacttcagtagaaagaagatttgctaacaaatattacagtttgattgtacatctgtgtaaaggaatggctcgcagttatgagcttctgtatttagtttccctcttttttgtggaaatatttctcatctaaaaaacttagcattgaacttaggatccctggttcaattcatc
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| CDS seq | atgcagctgcccaatttgccatgcagcagcagcaccaccaccaccaccaccaagttatctgtggctttctttcggcttcttgttatcctcctgctctcgtttgcctctccgaccagctcctgcacagagcaagaggagagctccctcatcggctttctagagggtctcttgccaggccacaacggcagcctcagcacgtcatgggtgaagggcatagactgctgcaaatgggaaggcatcaactgcagcagcgatggcacggtcacagatgtctcgttggcttccaagggcctccaagggcgcatctcgccatctctcggcaatcttactgggctgttgcacctcaacctgtctcacaacttactcaatggctacctaccaatggaattgttgttctccagaagtatcatcgttcttgacgtcagcttcaaccgcctggatggttctctgccagagttggagtcccctagtggtggttctcctctccaggtactgaatatctcgagcaattcatttacagggcagttctcatcaaaacaatgggaagtgatgaagaatattgtcgctcttaatgtaagcaacaacagctttacaggacagataccaccttctatatgcatcaactccccatcatttgctatccttgacctttgttacaaccaattcagtggcagtatttcctcagggctcggaaattgctccaagctgagagagttcaaggctggatacaacaactttagtggagctctccctgaagaactcttcagtgctacctcattggagcacctatctcttcctaataatgatttacaaggagttcttgatggttcccacatagtaaaactcgtcaagctgacagtccttgatctcggatcgactgggctcagtggcaacatcccagattctattggccaactaagcacattggaggagctccggttggacaacaacaacatgtctggtgagctgccatcagccctaggtaactgcacaaatctgagatatctcagcctcagaaacaataaatttgtgggagatcttagcaaagtcaattttacctggttgaatttgagaatcgcagatttctcaattaataacttcactggtacagttccagaaagcatattctcatgcagcaatctaattgcgttgcggctggctttcaacaagtttcatggccagttgtcaccaagaatgggtactctcaagtccctgtccttcttttcaataagtgataaccatttcacaaatatcacaaatgcacttcagatactcaggagctgcaagaaccttacgtcactgcttattggaaccaatttcaagggtgaaaccataccacaagatgaaacagttgatggttttgagaatcttcgggtactgaccatagactcttgtggagcaatggggcaaatccctccttggatatcaaagctcaaaaaactggaagtgttggatttatcaaacaatatgctcatcggagaaataccattttggattagagatatgcctgttcttttctatttagacataacaaacaacagtcttacaggggatatcccagttgcgttgatgaacttgccgatgctacaatcagggaagaatgctgcccagttggacccaaattttcttgaattgcctgtttattggacaccatcacgtcaataccgcttgctcaatgcttttcctaatgcattgaatctaggtaataatagtttcacaggagtgattccccctgagattggtcagttgaaaatgcttgatggcttcaatgtcagctttaacaggttatctggagaaataccacagcagatatgcaacctcacaaacctgcaattgctagatttatcaagcaatcagctcacaggtgaactaccggccgcactgactgatctgcacttcctttctaaattcaatgtttctaacaatgaactagaagggccagttccaactggaagacagtttgatacatttctcaattctagctatagtgggaatccaaagctatgtggccctatgctcagcaacctgtgtgattcagtaccaacacatgcatcctccatgaaacggcgcaacaagaaggccattattgcacttgcattaggtgtgttctttggagggattgccatccttttcttgctgggacgttttcttatatccatcagaagaacaagctctgtccaccaaaacaagagcagcaacaatggggacatagaagcagcttcattgagttctgtttcagagcacttgcacgacatgataaaaggaaccattttggtgatggtacctcaaggcaagggaggatcaaataatctcaaattcaaggatatcttgaaggccactaataactttgaccagcagaacattatcggatgtggaggtaatggtctagtctacaaggctgagctacccaatggatccaagcttgcaatcaagaagctcaacggtgaaatgtgtctgatggagagagaatttaccgcagaggtagaagcactctctatggcacaacatgacaatcttgtgccactatggggttactgcatccaaggaaactcaaggctcctcatatattcttacatggagaacggcagtctagatgattttggagtggtgctgcttgagctgctcacagggaagaggccagtccaggtcttgtccaagtcgaaggaacttgtccaatggacccgggagatgagatctcatggaaaggatactgaggtgttggatccagcactgagaggaagaggccatgaagagcaaatgctgaaggtgcttgatgtggcttgcaagtgtatcagccataatccttgcaagaggccaaccatccaagaagtggtctcctgcctggacaatgttgatgcagacctgcaggtgcagatgtag
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| Protein seq | MQLPNLPCSSSTTTTTTKLSVAFFRLLVILLLSFASPTSSCTEQEESSLIGFLEGLLPGHNGSLSTSWVKGIDCCKWEGINCSSDGTVTDVSLASKGLQGRISPSLGNLTGLLHLNLSHNLLNGYLPMELLFSRSIIVLDVSFNRLDGSLPELESPSGGSPLQVLNISSNSFTGQFSSKQWEVMKNIVALNVSNNSFTGQIPPSICINSPSFAILDLCYNQFSGSISSGLGNCSKLREFKAGYNNFSGALPEELFSATSLEHLSLPNNDLQGVLDGSHIVKLVKLTVLDLGSTGLSGNIPDSIGQLSTLEELRLDNNNMSGELPSALGNCTNLRYLSLRNNKFVGDLSKVNFTWLNLRIADFSINNFTGTVPESIFSCSNLIALRLAFNKFHGQLSPRMGTLKSLSFFSISDNHFTNITNALQILRSCKNLTSLLIGTNFKGETIPQDETVDGFENLRVLTIDSCGAMGQIPPWISKLKKLEVLDLSNNMLIGEIPFWIRDMPVLFYLDITNNSLTGDIPVALMNLPMLQSGKNAAQLDPNFLELPVYWTPSRQYRLLNAFPNALNLGNNSFTGVIPPEIGQLKMLDGFNVSFNRLSGEIPQQICNLTNLQLLDLSSNQLTGELPAALTDLHFLSKFNVSNNELEGPVPTGRQFDTFLNSSYSGNPKLCGPMLSNLCDSVPTHASSMKRRNKKAIIALALGVFFGGIAILFLLGRFLISIRRTSSVHQNKSSNNGDIEAASLSSVSEHLHDMIKGTILVMVPQGKGGSNNLKFKDILKATNNFDQQNIIGCGGNGLVYKAELPNGSKLAIKKLNGEMCLMEREFTAEVEALSMAQHDNLVPLWGYCIQGNSRLLIYSYMENGSLDDFGVVLLELLTGKRPVQVLSKSKELVQWTREMRSHGKDTEVLDPALRGRGHEEQMLKVLDVACKCISHNPCKRPTIQEVVSCLDNVDADLQVQM |
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| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0027040 | OsKeNa_06g0027040.01 | Chr06 | 29650366 | 29653795 | + | NAM | ||
| CDS seq | atgcagctgcccaatttgccatgcagcagcagcaccaccaccaccaccaccaagttatctgtggctttctttcggcttcttgttatcctcctgctctcgtttgcctctccgaccagctcctgcacagagcaagaggagagctccctcatcggctttctagagggtctcttgccaggccacaacggcagcctcagcacgtcatgggtgaagggcatagactgctgcaaatgggaaggcatcaactgcagcagcgatggcacggtcacagatgtctcgttggcttccaagggcctccaagggcgcatctcgccatctctcggcaatcttactgggctgttgcacctcaacctgtctcacaacttactcaatggctacctaccaatggaattgttgttctccagaagtatcatcgttcttgacgtcagcttcaaccgcctggatggttctctgccagagttggagtcccctagtggtggttctcctctccaggtactgaatatctcgagcaattcatttacagggcagttctcatcaaaacaatgggaagtgatgaagaatattgtcgctcttaatgtaagcaacaacagctttacaggacagataccaccttctatatgcatcaactccccatcatttgctatccttgacctttgttacaaccaattcagtggcagtatttcctcagggctcggaaattgctccaagctgagagagttcaaggctggatacaacaactttagtggagctctccctgaagaactcttcagtgctacctcattggagcacctatctcttcctaataatgatttacaaggagttcttgatggttcccacatagtaaaactcgtcaagctgacagtccttgatctcggatcgactgggctcagtggcaacatcccagattctattggccaactaagcacattggaggagctccggttggacaacaacaacatgtctggtgagctgccatcagccctaggtaactgcacaaatctgagatatctcagcctcagaaacaataaatttgtgggagatcttagcaaagtcaattttacctggttgaatttgagaatcgcagatttctcaattaataacttcactggtacagttccagaaagcatattctcatgcagcaatctaattgcgttgcggctggctttcaacaagtttcatggccagttgtcaccaagaatgggtactctcaagtccctgtccttcttttcaataagtgataaccatttcacaaatatcacaaatgcacttcagatactcaggagctgcaagaaccttacgtcactgcttattggaaccaatttcaagggtgaaaccataccacaagatgaaacagttgatggttttgagaatcttcgggtactgaccatagactcttgtggagcaatggggcaaatccctccttggatatcaaagctcaaaaaactggaagtgttggatttatcaaacaatatgctcatcggagaaataccattttggattagagatatgcctgttcttttctatttagacataacaaacaacagtcttacaggggatatcccagttgcgttgatgaacttgccgatgctacaatcagggaagaatgctgcccagttggacccaaattttcttgaattgcctgtttattggacaccatcacgtcaataccgcttgctcaatgcttttcctaatgcattgaatctaggtaataatagtttcacaggagtgattccccctgagattggtcagttgaaaatgcttgatggcttcaatgtcagctttaacaggttatctggagaaataccacagcagatatgcaacctcacaaacctgcaattgctagatttatcaagcaatcagctcacaggtgaactaccggccgcactgactgatctgcacttcctttctaaattcaatgtttctaacaatgaactagaagggccagttccaactggaagacagtttgatacatttctcaattctagctatagtgggaatccaaagctatgtggccctatgctcagcaacctgtgtgattcagtaccaacacatgcatcctccatgaaacggcgcaacaagaaggccattattgcacttgcattaggtgtgttctttggagggattgccatccttttcttgctgggacgttttcttatatccatcagaagaacaagctctgtccaccaaaacaagagcagcaacaatggggacatagaagcagcttcattgagttctgtttcagagcacttgcacgacatgataaaaggaaccattttggtgatggtacctcaaggcaagggaggatcaaataatctcaaattcaaggatatcttgaaggccactaataactttgaccagcagaacattatcggatgtggaggtaatggtctagtctacaaggctgagctacccaatggatccaagcttgcaatcaagaagctcaacggtgaaatgtgtctgatggagagagaatttaccgcagaggtagaagcactctctatggcacaacatgacaatcttgtgccactatggggttactgcatccaaggaaactcaaggctcctcatatattcttacatggagaacggcagtctagatgattttggagtggtgctgcttgagctgctcacagggaagaggccagtccaggtcttgtccaagtcgaaggaacttgtccaatggacccgggagatgagatctcatggaaaggatactgaggtgttggatccagcactgagaggaagaggccatgaagagcaaatgctgaaggtgcttgatgtggcttgcaagtgtatcagccataatccttgcaagaggccaaccatccaagaagtggtctcctgcctggacaatgttgatgcagacctgcaggtgcagatgtag
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| Protein seq | MQLPNLPCSSSTTTTTTKLSVAFFRLLVILLLSFASPTSSCTEQEESSLIGFLEGLLPGHNGSLSTSWVKGIDCCKWEGINCSSDGTVTDVSLASKGLQGRISPSLGNLTGLLHLNLSHNLLNGYLPMELLFSRSIIVLDVSFNRLDGSLPELESPSGGSPLQVLNISSNSFTGQFSSKQWEVMKNIVALNVSNNSFTGQIPPSICINSPSFAILDLCYNQFSGSISSGLGNCSKLREFKAGYNNFSGALPEELFSATSLEHLSLPNNDLQGVLDGSHIVKLVKLTVLDLGSTGLSGNIPDSIGQLSTLEELRLDNNNMSGELPSALGNCTNLRYLSLRNNKFVGDLSKVNFTWLNLRIADFSINNFTGTVPESIFSCSNLIALRLAFNKFHGQLSPRMGTLKSLSFFSISDNHFTNITNALQILRSCKNLTSLLIGTNFKGETIPQDETVDGFENLRVLTIDSCGAMGQIPPWISKLKKLEVLDLSNNMLIGEIPFWIRDMPVLFYLDITNNSLTGDIPVALMNLPMLQSGKNAAQLDPNFLELPVYWTPSRQYRLLNAFPNALNLGNNSFTGVIPPEIGQLKMLDGFNVSFNRLSGEIPQQICNLTNLQLLDLSSNQLTGELPAALTDLHFLSKFNVSNNELEGPVPTGRQFDTFLNSSYSGNPKLCGPMLSNLCDSVPTHASSMKRRNKKAIIALALGVFFGGIAILFLLGRFLISIRRTSSVHQNKSSNNGDIEAASLSSVSEHLHDMIKGTILVMVPQGKGGSNNLKFKDILKATNNFDQQNIIGCGGNGLVYKAELPNGSKLAIKKLNGEMCLMEREFTAEVEALSMAQHDNLVPLWGYCIQGNSRLLIYSYMENGSLDDFGVVLLELLTGKRPVQVLSKSKELVQWTREMRSHGKDTEVLDPALRGRGHEEQMLKVLDVACKCISHNPCKRPTIQEVVSCLDNVDADLQVQM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0027040 | OsKeNa_06g0027040.02 | Chr06 | 29652738 | 29653752 | + | IsoSeq | ||
| CDS seq | atgtggcttgcaagtgtatcagccataatccttgcaagaggccaaccatccaagaagtggtctcctgcctggacaatgttgatgcagacctgcaggtgcagatgt |
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| Protein seq | MWLASVSAIILARGQPSKKWSPAWTMLMQTCRCRC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.624004 | 4.118770 | 0.942979 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0691800 | RBH | 0.548103 | 0.454097 | 1.088344 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47650 | RBH | 0.300791 | 0.257852 | 0.279847 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0691800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027230 | RBH | 0.308243 | 12.638654 | 1.293246 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | RBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027220 | RBH | 0.257529 | 12.704639 | 1.339290 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026780 | RBH | 0.103267 | 0.153124 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027270 | RBH | 2.433515 | 15.955398 | 4.767107 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0454100 | RBH | 2.002978 | 2.5656925 | 1.1766235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026670 | RBH | 0.168016 | 0.799661 | 0.390164 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0436300 | RBH | 4.3807075 | 13.087918 | 4.9356265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027150 | RBH | 0.072125 | 0.581854 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027230 | RBH | 0.223407 | 14.602649 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026830 | RBH | 3.411270 | 27.570658 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027520 | SBH | 0.105448 | 1.321196 | 0.075743 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027090 | RBH | 0.000000 | 1.370988 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026980 | RBH | 0.077915 | 1.450341 | 0.921964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027060 | RBH | 0.942823 | 33.026562 | 1.823128 |
