Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0021560 | OGI:06068070 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:24554121-24555612 | ||||||||
| Gene Symbol | ERF1, Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN | ||||||||||
| DNA seq | acacaattacaatgtttttatttacttttattagaagttgacaccacttatatatatgtagtctgatctctgatgacgttgatacatagcagagctttcaccagtatgactataatgacggggacgtcttgtacatacaagtaagtctttaataaatacacagcttcacttcacacagtagtaatcgatcttataattgtttcctaattaagctggatatgtagtagtaatagagatatacctatcatatgtagcaatcttaactgcctgtgcaccaaccaccctaccagatccttgatcttagatggtgacctgatcatgctgttttaaccttgcattttcagtttctttcctgttcttccggaattcagatgacgaggctaccttcaccaccgtgcagcagcccatgtgacggcgagcccgggccgctcctgcccagcagctcctcgatcatctgcagcgcgatcctctcctcgtcgtccattgccggaggtggtggcgacggcgagcccgtggtggacgtggacgtcgttgtgactgtgctgtcactcggagtcggctggtcgctggacgacgctgctgttgctgctgccaccttcgcagccgacgacacggccgtgtccttgttgagctcgacggtcatgacccagctggagtcagcgcgtgcgccggcgcgcttctgccagacgccaatgtgggacttctccgggtcgaggcggaggcaggtgagcgacggcgacggcgtcttgcagcacttgcggagcttggcgctgaggatctgagacaggctgttcccgccgctgttggccgtcattgaggacgagctgccgctgccaccgccgacacggccatcccgccctgccaccgcagccgccggtgtgagctcccccgtggcgttcctcgcgaccgggaagttggtcttggcgttgcggccgctcatcaggatggcggcctcgtcgtacgcccgcgccgcctcctccgccgtctcaaaggtacccagccacaccctcctcttactgccacaacgcacgtagcaaaaaaaacatcatccatcattcatgcatgcacgcacccaagcaccttgagttagctactaacacaccatgaaagagaaagaaaaaaagaaagaaagcaacaacaaaccagaaccactagctatccatcaaaatgtatctatcacgacagtggcataacacatcagagcaacatagctagctagtgatcatcactagtgagatagagacttacaggagagggtgcctgatctcggagacccaggagccccagtggcgctgcctgactccgcggaacttcttcttcgactgtcccatgatctcacctctgcagggatactgtccctgcagaattctcccaaggacacagcagaggaggcaggcagagtaggagaaggaatgagcagcagcagcagccagtcagtcagtcagacagtgagcctcctcctagtgtggagtgctgggaggagtaaagttct
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| CDS seq | atgggacagtcgaagaagaagttccgcggagtcaggcagcgccactggggctcctgggtctccgagatcaggcaccctctccttaagaggagggtgtggctgggtacctttgagacggcggaggaggcggcgcgggcgtacgacgaggccgccatcctgatgagcggccgcaacgccaagaccaacttcccggtcgcgaggaacgccacgggggagctcacaccggcggctgcggtggcagggcgggatggccgtgtcggcggtggcagcggcagctcgtcctcaatgacggccaacagcggcgggaacagcctgtctcagatcctcagcgccaagctccgcaagtgctgcaagacgccgtcgccgtcgctcacctgcctccgcctcgacccggagaagtcccacattggcgtctggcagaagcgcgccggcgcacgcgctgactccagctgggtcatgaccgtcgagctcaacaaggacacggccgtgtcgtcggctgcgaaggtggcagcagcaacagcagcgtcgtccagcgaccagccgactccgagtgacagcacagtcacaacgacgtccacgtccaccacgggctcgccgtcgccaccacctccggcaatggacgacgaggagaggatcgcgctgcagatgatcgaggagctgctgggcaggagcggcccgggctcgccgtcacatgggctgctgcacggtggtgaaggtagcctcgtcatctga
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| Protein seq | MGQSKKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVARNATGELTPAAAVAGRDGRVGGGSGSSSSMTANSGGNSLSQILSAKLRKCCKTPSPSLTCLRLDPEKSHIGVWQKRAGARADSSWVMTVELNKDTAVSSAAKVAAATAASSSDQPTPSDSTVTTTSTSTTGSPSPPPPAMDDEERIALQMIEELLGRSGPGSPSHGLLHGGEGSLVI |
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| Function | Ethylene-responsive transcription factor WIN1 [UniProtKB/Swiss-Prot:Q9XI33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0021560 | OsKeNa_06g0021560.01 | Chr06 | 24554121 | 24555612 | - | NAM | ||
| CDS seq | atgggacagtcgaagaagaagttccgcggagtcaggcagcgccactggggctcctgggtctccgagatcaggcaccctctccttaagaggagggtgtggctgggtacctttgagacggcggaggaggcggcgcgggcgtacgacgaggccgccatcctgatgagcggccgcaacgccaagaccaacttcccggtcgcgaggaacgccacgggggagctcacaccggcggctgcggtggcagggcgggatggccgtgtcggcggtggcagcggcagctcgtcctcaatgacggccaacagcggcgggaacagcctgtctcagatcctcagcgccaagctccgcaagtgctgcaagacgccgtcgccgtcgctcacctgcctccgcctcgacccggagaagtcccacattggcgtctggcagaagcgcgccggcgcacgcgctgactccagctgggtcatgaccgtcgagctcaacaaggacacggccgtgtcgtcggctgcgaaggtggcagcagcaacagcagcgtcgtccagcgaccagccgactccgagtgacagcacagtcacaacgacgtccacgtccaccacgggctcgccgtcgccaccacctccggcaatggacgacgaggagaggatcgcgctgcagatgatcgaggagctgctgggcaggagcggcccgggctcgccgtcacatgggctgctgcacggtggtgaaggtagcctcgtcatctga
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| Protein seq | MGQSKKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVARNATGELTPAAAVAGRDGRVGGGSGSSSSMTANSGGNSLSQILSAKLRKCCKTPSPSLTCLRLDPEKSHIGVWQKRAGARADSSWVMTVELNKDTAVSSAAKVAAATAASSSDQPTPSDSTVTTTSTSTTGSPSPPPPAMDDEERIALQMIEELLGRSGPGSPSHGLLHGGEGSLVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.392045 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0604000 | RBH | 0.0 | 0.0 | 3.218880 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g40150 | RBH | 0.0 | 0.0 | 0.819982 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0604000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021710 | RBH | 0.0 | 0.000000 | 3.823379 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007910 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021650 | RBH | 0.0 | 0.000000 | 4.970822 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021360 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021770 | RBH | 0.0 | 0.0 | 3.190192 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0378200 | RBH | 1.950226 | 3.075568 | 4.4390705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021190 | RBH | 0.0 | 0.0 | 0.076893 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0356600 | RBH | 2.367245 | 4.322388 | 5.071691 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0021640 | RBH | 0.0 | 0.093856 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0021610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021940 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021510 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021330 | RBH | 0.0 | 0.0 | 2.952387 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0021560 | RBH | 0.0 | 0.000000 | 2.985951 |
