Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0008320 | OGI:06017770 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:6348675-6352830 | ||||||||
| Gene Symbol | MADS63, OsMADS63 | ||||||||||
| DNA seq | atggacgcggtccgtccactccagccagccgatcgcgagtggccccccaacccgacaaaacctcctcgcctttcactcgctacatcgatttgccagccacgctacataaaccgtacaaaaccatatcctCccccatcgcctcgcctcgccgatcgatcgacggacgacggccggaacatagctgtagatcgagctgaatcgccggcggcggccatgggacgggtgaagctgcagatcaagaggatcgagaacatcccgaacaggcaggtgacgttctccaagcggcgaaacgggctgatcaagaaggcctacgagctgtccgtcctctgcgacatcgacatcgccctcctcatgttctccccctccggccgcctcagccacttctccggccgccgcaggtaaattaattaagtttaaatcaaatcaaatcaaattaattaaccacatgcatgcattcgacttcgagcatgcaaatttgatcatatatagtcatgtaattttttgcgactttgtaggatcgaggacgtgctcacaaggtacatcaatctcccagaaagtgacagaggagggtacgtaaacttcttcgacggaaaaggttcttctttttattttttttcatttgatgcattattaccgttttactcgtgaggaagttgttaatattgatcaagaaaccgtttgccaattattcctatcgcatgcagaactatccaaaacagagaggtgagggttctcttgccttaacttttcttttttttttctacatcgtttttgctatataatttctctcatcatcaacgtgttcatcgatgcagtatttgatcaacatgctcacccagctcaaatgcgagagcgacgtcaccgaggatctcactaacacgtacgtagagctagctcgatcgcgattcattcttaatcaaacgatctgcattatgcttcagtttcacaacgagattttaacctgaacctagcactcttcctcgtgtttgtTCttaatctcggtgctcttgctgatccaggagcagtaaggcgccggttaactccaacattgaggtaattaacatttctcgcacatgaacaccactgtcaattgagctctgaaaaaatctctgaacccaacgctctgaaactgaaccgatcactgactctcactcaggagcttcagcaagagatcaggagatgccagcaccagatgcagctcacagaggagcaattgaggtgcagtaatatcaatacaatatatgaatatcgtctcattctctcgattaattaacttgcgatccatgctagttgcaatggttttttctggcgttgggtttcaggatgtttgagccggacccggccaggtctgcatccatggaggacgtcgaggccagcgagaagttcatcgccggcatcctcagccgcgtcgaggagaggaaggtgagcacaagtgttaatttgatcactcgattaatggcgctgtaattagtggccgagagtgatatccgaggaatgatcacatcagataataggattaatgacatgatcttcaaataatgacgatttttacagtgatcgtctagcttaattttcaggtaatagaaatgatccagaTtttttttcgtctgctaactaactgcgtttctgttgtcacacatgttttgcagaggtatttgctgtgcagcatgggctcgttcgacgtgacggcgtcaacatctgccatgcagcatgtacgcaaatctatctttctatagttggctcgtgtaagctatcttattggccacgtggcgatgttaaatttcaagataaatctaaaaaaatatgcataagaaaaaatagccaaaaagaaagaaaaagacacaaatctaatttctggagaCTTcccaattatctatcctctttgagataaatgtagagaatatatatccataacaaaaataaattaccaaggagcaaccaaaaacacatcatccagattccagaggtttcccaaaatgtttttcccattgcaatatatctatgtatctcatgctggttggtttcatgctagctaattcgttgccctcataatcctttagttaagcaacacgtggcgagatacaagcggtagaaagagcgcgggtaagaaacccctcataatcctttagttgagcaacacgtggcgagatacaagcggtagaaagagcgcgggtaagaaaccctctctataaaactagcaaagcacgttacgacggtgaattaaaaaaaagagagaagaagttccactgcatgtgcgtagctacgccatgctgcaccataatccaacCGTgcatgatcaaactagtgcaaacacataaaagaggggaaaaggaaaaaaaataaaaagacgaaaaaatattttttttgtaaaattctttgcaaattattcgggacaagtatcgtgaccacttgtattacgagaaactaaaaaggataaatagaaaaaaataaatgacagaaacaaTtttgctctttttaagattgagtcgaagactataaccctgataatcattttctaaaTatatatattttctgcttatactataaaataaataatatgtatatcttttaacttttagaaaacgttacaattatgataaaaaaaataccggtcttggatccatatctagattcttaaaggccatacacataggctaatagaggaaacgccaatcgacaagttgattttttaatatattaacctaactagctccatcactatctctcgttttgtattacgtcataaacaatgtgtaaaatattcatagacaaattaattatgctgatcacaccttattataaattatcacatgtgcgtgtgcagctgtatctaccgcagcagcatcagcacggggacatcactgataatgggtttggaagcgatgaggtggcctcgTgggtctctgaggggatgccgccgacaacctcgtcggtggcgtcgatattcgccggaacttcagattccatgatgtcttttaggtaagaaagatagtagataacaagcttttaaaaactagaatagaatgtacctgtactctatttatgtgagcttaaatttttttttcttcatggtcagagatcaagcggtgtacgacacgatgagacaagatgcatgtgtggatcagacagtggtcccggagatggggatgtgccatgtggaccagcagaaccagagtgacgactggcaggcgtacacgtcggcggagttcctcaacgcgctaatcccgcccacgccgttccctctcgacgacgaggtgatgtcataaatagaatagctgacgtcagcatgataacgtagatattggatctggtacctccggtaacatacatgataccatgtagttaacagatttgataactatatatcatgttgatgtcagtatagtaccgtagatattatctagtactttcgggtaccaggcatgatatctcgtaggtaccaaatatgatagttatgtatcttgctgacgtcaatacgatatacatcgaacctagtacatatcgtattaaacattatattcagtaggttccagatctggtatttaggtattatgttgacatcatctatttcattggaacggtataccattctacattctatattgTttctgttaatatgcaccaataatccactccaacatatttttgatgcgatgactgacgacgctgaacttttttttaatgaattatcatgagattgtttcttttctttattttacacacacaactctaaactgttgtgtgtggagtgcaggatacgatgggcccgatgttggcgtcatcaccgctattgatgcccggcatccatgaccagcagccgccggtggaggatatggcgacggcgggctgctcgcaagcgccggctaacgatggcaacgggttatacgcagctgaggacattgctccggttaacgttggttaattagatgcttttgtactagaaatttatggaatatatagtgttgtcatgttactagtgtgccaggaattgaagctaaggatttttagtttggaattttttttctttgatcatgatgggctgggtgtgccacaattaatgttatatgatccatataatacaccatgcacaatgtaagataatgttacgtactagcatgtaataagatattatccagtaagatcgagttatttatca
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| CDS seq | atggacgcggtccgtccactccagccagccgatcgcgagtggccccccaacccgacaaaacctcctcgcctttcactcgctacatcgatttgccagccacgctacataaaccgtacaaaaccatatcctCccccatcgcctcgcctcgccgatcgatcgacggacgacggccggaacatagctgtagatcgagctgaatcgccggcggcggccatgggacgggtgaagctgcagatcaagaggatcgagaacatcccgaacaggcaggtgacgttctccaagcggcgaaacgggctgatcaagaaggcctacgagctgtccgtcctctgcgacatcgacatcgccctcctcatgttctccccctccggccgcctcagccacttctccggccgccgcaggatcgaggacgtgctcacaaggtacatcaatctcccagaaagtgacagaggaggaactatccaaaacagagagtatttgatcaacatgctcacccagctcaaatgcgagagcgacgtcaccgaggatctcactaacacgagcagtaaggcgccggttaactccaacattgaggagcttcagcaagagatcaggagatgccagcaccagatgcagctcacagaggagcaattgaggatgtttgagccggacccggccaggtctgcatccatggaggacgtcgaggccagcgagaagttcatcgccggcatcctcagccgcgtcgaggagaggaagaggtatttgctgtgcagcatgggctcgttcgacgtgacggcgtcaacatctgccatgcagcatctgtatctaccgcagcagcatcagcacggggacatcactgataatgggtttggaagcgatgaggtggcctcgTgggtctctgaggggatgccgccgacaacctcgtcggtggcgtcgatattcgccggaacttcagattccatgatgtcttttagagatcaagcggtgtacgacacgatgagacaagatgcatgtgtggatcagacagtggtcccggagatggggatgtgccatgtggaccagcagaaccagatgcaggatacgatgggcccgatgttggcgtcatcaccgctattgatgcccggcatccatgaccagcagccgccggtggaggatatggcgacggcgggctgctcgcaagcgccggctaacgatggcaacgggttatacgcagctgaggacattgctccggttaacgttggttaa
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| Protein seq | MDAVRPLQPADREWPPNPTKPPRLSLATSICQPRYINRTKPYPPPSPRLADRSTDDGRNIAVDRAESPAAAMGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEELQQEIRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLLCSMGSFDVTASTSAMQHLYLPQQHQHGDITDNGFGSDEVASWVSEGMPPTTSSVASIFAGTSDSMMSFRDQAVYDTMRQDACVDQTVVPEMGMCHVDQQNQMQDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCSQAPANDGNGLYAAEDIAPVNVG |
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| Function | Agamous-like MADS-box protein AGL66 [UniProtKB/Swiss-Prot:Q1PFC2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0008320 | OsKeNa_06g0008320.01 | Chr06 | 6348675 | 6352596 | + | NAM | ||
| CDS seq | atggacgcggtccgtccactccagccagccgatcgcgagtggccccccaacccgacaaaacctcctcgcctttcactcgctacatcgatttgccagccacgctacataaaccgtacaaaaccatatcctCccccatcgcctcgcctcgccgatcgatcgacggacgacggccggaacatagctgtagatcgagctgaatcgccggcggcggccatgggacgggtgaagctgcagatcaagaggatcgagaacatcccgaacaggcaggtgacgttctccaagcggcgaaacgggctgatcaagaaggcctacgagctgtccgtcctctgcgacatcgacatcgccctcctcatgttctccccctccggccgcctcagccacttctccggccgccgcaggatcgaggacgtgctcacaaggtacatcaatctcccagaaagtgacagaggaggaactatccaaaacagagagtatttgatcaacatgctcacccagctcaaatgcgagagcgacgtcaccgaggatctcactaacacgagcagtaaggcgccggttaactccaacattgaggagcttcagcaagagatcaggagatgccagcaccagatgcagctcacagaggagcaattgaggatgtttgagccggacccggccaggtctgcatccatggaggacgtcgaggccagcgagaagttcatcgccggcatcctcagccgcgtcgaggagaggaagaggtatttgctgtgcagcatgggctcgttcgacgtgacggcgtcaacatctgccatgcagcatctgtatctaccgcagcagcatcagcacggggacatcactgataatgggtttggaagcgatgaggtggcctcgTgggtctctgaggggatgccgccgacaacctcgtcggtggcgtcgatattcgccggaacttcagattccatgatgtcttttagagatcaagcggtgtacgacacgatgagacaagatgcatgtgtggatcagacagtggtcccggagatggggatgtgccatgtggaccagcagaaccagatgcaggatacgatgggcccgatgttggcgtcatcaccgctattgatgcccggcatccatgaccagcagccgccggtggaggatatggcgacggcgggctgctcgcaagcgccggctaacgatggcaacgggttatacgcagctgaggacattgctccggttaacgttggttaa
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| Protein seq | MDAVRPLQPADREWPPNPTKPPRLSLATSICQPRYINRTKPYPPPSPRLADRSTDDGRNIAVDRAESPAAAMGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEELQQEIRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLLCSMGSFDVTASTSAMQHLYLPQQHQHGDITDNGFGSDEVASWVSEGMPPTTSSVASIFAGTSDSMMSFRDQAVYDTMRQDACVDQTVVPEMGMCHVDQQNQMQDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCSQAPANDGNGLYAAEDIAPVNVG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0008320 | OsKeNa_06g0008320.02 | Chr06 | 6348808 | 6352830 | + | IsoSeq | ||
| CDS seq | atgttactagtgtgccaggaattgaagctaaggatttttagtttggaattttttttctttgatcatgatgggctgggtgtgccacaattaatgttatatgatccatataatacaccatgcaca |
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| Protein seq | MLLVCQELKLRIFSLEFFFFDHDGLGVPQLMLYDPYNTPCT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.519990 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0223300 | RBH | 0.0 | 0.0 | 3.138766 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11970 | RBH | 0.0 | 0.0 | 0.807979 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0223300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008460 | RBH | 0.0 | 0.0 | 3.623015 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0034630 | SBH | 1.203665 | 6.367437 | 1.138003 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008320 | RBH | 0.0 | 0.0 | 3.256622 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008310 | RBH | 0.0 | 0.000000 | 17.506166 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0105700 | RBH | 0 | 0 | 0.872939 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008050 | RBH | 0.0 | 0.0 | 1.090850 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0106400 | RBH | 0.0012605 | 0 | 1.115994 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008450 | RBH | 0.0 | 0.0 | 0.374586 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008150 | RBH | 0.0 | 0.0 | 0.900616 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008430 | RBH | 0.0 | 0.0 | 2.530809 |
