Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os06g0223300 OGI:06017770 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr06:6372353-6376374
Gene Symbol MADS63, OsMADS63
DNA seq

GCCTCGCCTCGCCGATCGATCGACGGACGACGGCCGGAACATAGCTGTAGATCGAGCTGAATCGCCGGCGGCGGCCATGGGACGGGTGAAGCTGCAGATCAAGAGGATCGAGAACATCCCGAACAGGCAGGTGACGTTCTCCAAGCGGCGAAACGGGCTGATCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGGTAAATTAATTAAGTTTAAATCAAATCAAATCAAATTAATTAACCACATGCATGCATTCGACTTCGAGCATGCAAATTTGATCATATATAGTCATGTAATTTTTTGCGACTTTGTAGGATCGAGGACGTGCTCACAAGGTACATCAATCTCCCAGAAAGTGACAGAGGAGGGTACGTAAACTTCTTCGACGGAAAAGGTTCTTCTTTTTATTTTTTTTCATTTGATGCATTATTACCGTTTTACTCGTGAGGAAGTTGTTAATATTGATCAAGAAACCGTTTGCCAATTATTCCTATCGCATGCAGAACTATCCAAAACAGAGAGGTGAGGGTTCTCTTGCCTTAACTTTTCTTTTTTTTTTCTACATCGTTTTTGCTATATAATTTCTCTCATCATCAACGTGTTCATCGATGCAGTATTTGATCAACATGCTCACCCAGCTCAAATGCGAGAGCGACGTCACCGAGGATCTCACTAACACGTACGTAGAGCTAGCTCGATCGCGATTCATTCTTAATCAAACGATCTGCATTATGCTTCAGTTTCACAACGAGATTTTAACCTGAACCTAGCACTCTTCCTCGTGTTTGTTCTTAATCTCGGTGCTCTTGCTGATCCAGGAGCAGTAAGGCGCCGGTTAACTCCAACATTGAGGTAATTAACATTTCTCGCACATGAACACCACTGTCAATTGAGCTCTGAAAAAATCTCTGAACCCAACGCTCTGAAACTGAACCGATCACTGACTCTCACTCAGGAGCTTCAGCAAGAGATCAGGAGATGCCAGCACCAGATGCAGCTCACAGAGGAGCAATTGAGGTGCAGTAATATCAATACAATATATGAATATCGTCTCATTCTCTCGATTAATTAACTTGCGATCCATGCTAGTTGCAATGGTTTTTTCTGGCGTTGGGTTTCAGGATGTTTGAGCCGGACCCGGCCAGGTCTGCATCCATGGAGGACGTCGAGGCCAGCGAGAAGTTCATCGCCGGCATCCTCAGCCGCGTCGAGGAGAGGAAGGTGAGCACAAGTGTTAATTTGATCACTCGATTAATGGCGCTGTAATTAGTGGCCGAGAGTGATATCCGAGGAATGATCACATCAGATAATAGGATTAATGACATGATCTTCAAATAATGACGATTTTTACAGTGATCGTCTAGCTTAATTTTCAGGTAATAGAAATGATCCAGATTTTTTTTCGTCTGCTAACTAACTGCGTTTCTGTTGTCACACATGTTTTGCAGAGGTATTTGCTGTGCAGCATGGGCTCGTTCGACGTGACGGCGTCAACATCTGCCATGCAGCATGTACGCAAATCTATCTTTCTATAGTTGGCTCGTGTAAGCTATCTTATTGGCCACGTGGCGATGTTAAATTTCAAGATAAATCTAAAAAAATATGCATAAGAAAAAATAGCCAAAAAGAAAGAAAAAGACACAAATCTAATTTCTGGAGACTTCCCAATTATCTATCCTCTTTGAGATAAATGTAGAGAATATATATCCATAACAAAAATAAATTACCAAGGAGCAACCAAAAACACATCATCCAGATTCCAGAGGTTTCCCAAAATGTTTTTCCCATTGCAATATATCTATGTATCTCATGCTGGTTGGTTTCATGCTAGCTAATTCGTTGCCCTCATAATCCTTTAGTTAAGCAACACGTGGCGAGATACAAGCGGTAGAAAGAGCGCGGGTAAGAAACCCCTCATAATCCTTTAGTTGAGCAACACGTGGCGAGATACAAGCGGTAGAAAGAGCGCGGGTAAGAAACCCTCTCTATAAAACTAGCAAAGCACGTTACGACGGTGAATTAAAAAAAAGAGAGAAGAAGTTCCACTGCATGTGCGTAGCTACGCCATGCTGCACCATAATCCAACCGTGCATGATCAAACTAGTGCAAACACATAAAAGAGGGGAAAAGGAAAAAAAATAAAAAGACGAAAAAATATTTTTTTTGTAAAATTCTTTGCAAATTATTCGGGACAAGTATCGTGACCACTTGTATTACGAGAAACTAAAAAGGATAAATAGAAAAAAATAAATGACAGAAACAATTTTGCTCTTTTTAAGATTGAGTCGAAGACTATAACCCTGATAATCATTTTCTAAATATATATATTTTCTGCTTATACTATAAAATAAATAATATGTATATCTTTTAACTTTTAGAAAACGTTACAATTATGATAAAAAAAATACCGGTCTTGGATCCATATCTAGATTCTTAAAGGCCATACACATAGGCTAATAGAGGAAACGCCAATCGACAAGTTGATTTTTTAATATATTAACCTAACTAGCTCCATCACTATCTCTCGTTTTGTATTACGTCATAAACAATGTGTAAAATATTCATAGACAAATTAATTATGCTGATCACACCTTATTATAAATTATCACATGTGCGTGTGCAGCTGTATCTACCGCAGCAGCATCAGCACGGGGACATCACTGATAATGGGTTTGGAAGCGATGAGGTGGCCTCGTGGGTCTCTGAGGGGATGCCGCCGACAACCTCGTCGGTGGCGTCGATATTCGCCGGAACTTCAGATTCCATGATGTCTTTTAGGTAAGAAAGATAGTAGATAACAAGCTTTTAAAAACTAGAATAGAATGTACCTGTACTCTATTTATGTGAGCTTAAATTTTTTTTTCTTCATGGTCAGAGATCAAGCGGTGTACGACACGATGAGACAAGATGCATGTGTGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACGTCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGTGATGTCATAAATAGAATAGCTGACGTCAGCATGATAACGTAGATATTGGATCTGGTACCTCCGGTAACATACATGATACCATGTAGTTAACAGATTTGATAACTATATATCATGTTGATGTCAGTATAGTACCGTAGATATTATCTAGTACTTTCGGGTACCAGGCATGATATCTCGTAGGTACCAAATATGATAGTTATGTATCTTGCTGACGTCAATACGATATACATCGAACCTAGTACATATCGTATTAAACATTATATTCAGTAGGTTCCAGATCTGGTATTTAGGTATTATGTTGACATCATCTATTTCATTGGAACGGTATACCATTCTACATTCTATATTGTTTCTGTTAATATGCACCAATAATCCACTCCAACATATTTTTGATGCGATGACTGACGACGCTGAACTTTTTTTTAATGAATTATCATGAGATTGTTTCTTTTCTTTATTTTACACACACAACTCTAAACTGTTGTGTGTGGAGTGCAGGATACGATGGGCCCGATGTTGGCGTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAGCGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAATTAGATGCTTTTGTACTAGAAATTTATGGAATATATAGTGTTGTCATGTTACTAGTGTGCCAGGAATTGAAGCTAAGGATTTTTAGTTTGGAATTTTTTTTCTTTGATCATGATGGGCTGGGTGTGCCACAATTAATGTTATATGATCCATATAATACACCATGCACAATGTAAGATAATGTTACGTACTAGCATGTAATAAGATATTATCCAGTAAGATCGAGTTATTTATCATCT

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CDS seq

ATGGGACGGGTGAAGCTGCAGATCAAGAGGATCGAGAACATCCCGAACAGGCAGGTGACGTTCTCCAAGCGGCGAAACGGGCTGATCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGGATCGAGGACGTGCTCACAAGGTACATCAATCTCCCAGAAAGTGACAGAGGAGGAACTATCCAAAACAGAGAGTATTTGATCAACATGCTCACCCAGCTCAAATGCGAGAGCGACGTCACCGAGGATCTCACTAACACGAGCAGTAAGGCGCCGGTTAACTCCAACATTGAGGAGCTTCAGCAAGAGATCAGGAGATGCCAGCACCAGATGCAGCTCACAGAGGAGCAATTGAGGATGTTTGAGCCGGACCCGGCCAGGTCTGCATCCATGGAGGACGTCGAGGCCAGCGAGAAGTTCATCGCCGGCATCCTCAGCCGCGTCGAGGAGAGGAAGAGGTATTTGCTGTGCAGCATGGGCTCGTTCGACGTGACGGCGTCAACATCTGCCATGCAGCATCTGTATCTACCGCAGCAGCATCAGCACGGGGACATCACTGATAATGGGTTTGGAAGCGATGAGGTGGCCTCGTGGGTCTCTGAGGGGATGCCGCCGACAACCTCGTCGGTGGCGTCGATATTCGCCGGAACTTCAGATTCCATGATGTCTTTTAGAGATCAAGCGGTGTACGACACGATGAGACAAGATGCATGTGTGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACGTCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGATACGATGGGCCCGATGTTGGCGTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAGCGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAA

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Protein seq

MGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEELQQEIRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLLCSMGSFDVTASTSAMQHLYLPQQHQHGDITDNGFGSDEVASWVSEGMPPTTSSVASIFAGTSDSMMSFRDQAVYDTMRQDACVDQTVVPEMGMCHVDQQNQSDDWQAYTSAEFLNALIPPTPFPLDDEDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCSQAPANDGNGLYAAEDIAPVNVG

Function Agamous-like MADS-box protein AGL66 [UniProtKB/Swiss-Prot:Q1PFC2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os06g0223300 Os06t0223300-01 Chr06 6372353 6376374 + irgsp1_rep
CDS seq

ATGGGACGGGTGAAGCTGCAGATCAAGAGGATCGAGAACATCCCGAACAGGCAGGTGACGTTCTCCAAGCGGCGAAACGGGCTGATCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGGATCGAGGACGTGCTCACAAGGTACATCAATCTCCCAGAAAGTGACAGAGGAGGAACTATCCAAAACAGAGAGTATTTGATCAACATGCTCACCCAGCTCAAATGCGAGAGCGACGTCACCGAGGATCTCACTAACACGAGCAGTAAGGCGCCGGTTAACTCCAACATTGAGGAGCTTCAGCAAGAGATCAGGAGATGCCAGCACCAGATGCAGCTCACAGAGGAGCAATTGAGGATGTTTGAGCCGGACCCGGCCAGGTCTGCATCCATGGAGGACGTCGAGGCCAGCGAGAAGTTCATCGCCGGCATCCTCAGCCGCGTCGAGGAGAGGAAGAGGTATTTGCTGTGCAGCATGGGCTCGTTCGACGTGACGGCGTCAACATCTGCCATGCAGCATCTGTATCTACCGCAGCAGCATCAGCACGGGGACATCACTGATAATGGGTTTGGAAGCGATGAGGTGGCCTCGTGGGTCTCTGAGGGGATGCCGCCGACAACCTCGTCGGTGGCGTCGATATTCGCCGGAACTTCAGATTCCATGATGTCTTTTAGAGATCAAGCGGTGTACGACACGATGAGACAAGATGCATGTGTGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACGTCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGATACGATGGGCCCGATGTTGGCGTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAGCGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAA

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Protein seq

MGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEELQQEIRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLLCSMGSFDVTASTSAMQHLYLPQQHQHGDITDNGFGSDEVASWVSEGMPPTTSSVASIFAGTSDSMMSFRDQAVYDTMRQDACVDQTVVPEMGMCHVDQQNQSDDWQAYTSAEFLNALIPPTPFPLDDEDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCSQAPANDGNGLYAAEDIAPVNVG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0223300 RBH 0.0 0.0 3.138766
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g11970 RBH 0.0 0.0 0.807979
Nipponbare | IRGSP 1.0 | RAP-db Os02g0761000 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0008460 RBH 0.0 0.0 3.623015
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0008320 RBH 0.0 0.0 2.519990
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0008320 RBH 0.0 0.0 3.256622
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0008460 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0008310 RBH 0.0 0.000000 17.506166
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0105700 RBH 0 0 0.872939
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0008050 RBH 0.0 0.0 1.090850
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0106400 RBH 0.0012605 0 1.115994
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0008520 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0008330 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0008390 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0008450 RBH 0.0 0.0 0.374586
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0008240 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G008150 RBH 0.0 0.0 0.900616
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0008430 RBH 0.0 0.0 2.530809
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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