Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os06g0223300 | OGI:06017770 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:6372353-6376374 | ||||||||
Gene Symbol | MADS63, OsMADS63 | ||||||||||
DNA seq | GCCTCGCCTCGCCGATCGATCGACGGACGACGGCCGGAACATAGCTGTAGATCGAGCTGAATCGCCGGCGGCGGCCATGGGACGGGTGAAGCTGCAGATCAAGAGGATCGAGAACATCCCGAACAGGCAGGTGACGTTCTCCAAGCGGCGAAACGGGCTGATCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGGTAAATTAATTAAGTTTAAATCAAATCAAATCAAATTAATTAACCACATGCATGCATTCGACTTCGAGCATGCAAATTTGATCATATATAGTCATGTAATTTTTTGCGACTTTGTAGGATCGAGGACGTGCTCACAAGGTACATCAATCTCCCAGAAAGTGACAGAGGAGGGTACGTAAACTTCTTCGACGGAAAAGGTTCTTCTTTTTATTTTTTTTCATTTGATGCATTATTACCGTTTTACTCGTGAGGAAGTTGTTAATATTGATCAAGAAACCGTTTGCCAATTATTCCTATCGCATGCAGAACTATCCAAAACAGAGAGGTGAGGGTTCTCTTGCCTTAACTTTTCTTTTTTTTTTCTACATCGTTTTTGCTATATAATTTCTCTCATCATCAACGTGTTCATCGATGCAGTATTTGATCAACATGCTCACCCAGCTCAAATGCGAGAGCGACGTCACCGAGGATCTCACTAACACGTACGTAGAGCTAGCTCGATCGCGATTCATTCTTAATCAAACGATCTGCATTATGCTTCAGTTTCACAACGAGATTTTAACCTGAACCTAGCACTCTTCCTCGTGTTTGTTCTTAATCTCGGTGCTCTTGCTGATCCAGGAGCAGTAAGGCGCCGGTTAACTCCAACATTGAGGTAATTAACATTTCTCGCACATGAACACCACTGTCAATTGAGCTCTGAAAAAATCTCTGAACCCAACGCTCTGAAACTGAACCGATCACTGACTCTCACTCAGGAGCTTCAGCAAGAGATCAGGAGATGCCAGCACCAGATGCAGCTCACAGAGGAGCAATTGAGGTGCAGTAATATCAATACAATATATGAATATCGTCTCATTCTCTCGATTAATTAACTTGCGATCCATGCTAGTTGCAATGGTTTTTTCTGGCGTTGGGTTTCAGGATGTTTGAGCCGGACCCGGCCAGGTCTGCATCCATGGAGGACGTCGAGGCCAGCGAGAAGTTCATCGCCGGCATCCTCAGCCGCGTCGAGGAGAGGAAGGTGAGCACAAGTGTTAATTTGATCACTCGATTAATGGCGCTGTAATTAGTGGCCGAGAGTGATATCCGAGGAATGATCACATCAGATAATAGGATTAATGACATGATCTTCAAATAATGACGATTTTTACAGTGATCGTCTAGCTTAATTTTCAGGTAATAGAAATGATCCAGATTTTTTTTCGTCTGCTAACTAACTGCGTTTCTGTTGTCACACATGTTTTGCAGAGGTATTTGCTGTGCAGCATGGGCTCGTTCGACGTGACGGCGTCAACATCTGCCATGCAGCATGTACGCAAATCTATCTTTCTATAGTTGGCTCGTGTAAGCTATCTTATTGGCCACGTGGCGATGTTAAATTTCAAGATAAATCTAAAAAAATATGCATAAGAAAAAATAGCCAAAAAGAAAGAAAAAGACACAAATCTAATTTCTGGAGACTTCCCAATTATCTATCCTCTTTGAGATAAATGTAGAGAATATATATCCATAACAAAAATAAATTACCAAGGAGCAACCAAAAACACATCATCCAGATTCCAGAGGTTTCCCAAAATGTTTTTCCCATTGCAATATATCTATGTATCTCATGCTGGTTGGTTTCATGCTAGCTAATTCGTTGCCCTCATAATCCTTTAGTTAAGCAACACGTGGCGAGATACAAGCGGTAGAAAGAGCGCGGGTAAGAAACCCCTCATAATCCTTTAGTTGAGCAACACGTGGCGAGATACAAGCGGTAGAAAGAGCGCGGGTAAGAAACCCTCTCTATAAAACTAGCAAAGCACGTTACGACGGTGAATTAAAAAAAAGAGAGAAGAAGTTCCACTGCATGTGCGTAGCTACGCCATGCTGCACCATAATCCAACCGTGCATGATCAAACTAGTGCAAACACATAAAAGAGGGGAAAAGGAAAAAAAATAAAAAGACGAAAAAATATTTTTTTTGTAAAATTCTTTGCAAATTATTCGGGACAAGTATCGTGACCACTTGTATTACGAGAAACTAAAAAGGATAAATAGAAAAAAATAAATGACAGAAACAATTTTGCTCTTTTTAAGATTGAGTCGAAGACTATAACCCTGATAATCATTTTCTAAATATATATATTTTCTGCTTATACTATAAAATAAATAATATGTATATCTTTTAACTTTTAGAAAACGTTACAATTATGATAAAAAAAATACCGGTCTTGGATCCATATCTAGATTCTTAAAGGCCATACACATAGGCTAATAGAGGAAACGCCAATCGACAAGTTGATTTTTTAATATATTAACCTAACTAGCTCCATCACTATCTCTCGTTTTGTATTACGTCATAAACAATGTGTAAAATATTCATAGACAAATTAATTATGCTGATCACACCTTATTATAAATTATCACATGTGCGTGTGCAGCTGTATCTACCGCAGCAGCATCAGCACGGGGACATCACTGATAATGGGTTTGGAAGCGATGAGGTGGCCTCGTGGGTCTCTGAGGGGATGCCGCCGACAACCTCGTCGGTGGCGTCGATATTCGCCGGAACTTCAGATTCCATGATGTCTTTTAGGTAAGAAAGATAGTAGATAACAAGCTTTTAAAAACTAGAATAGAATGTACCTGTACTCTATTTATGTGAGCTTAAATTTTTTTTTCTTCATGGTCAGAGATCAAGCGGTGTACGACACGATGAGACAAGATGCATGTGTGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACGTCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGTGATGTCATAAATAGAATAGCTGACGTCAGCATGATAACGTAGATATTGGATCTGGTACCTCCGGTAACATACATGATACCATGTAGTTAACAGATTTGATAACTATATATCATGTTGATGTCAGTATAGTACCGTAGATATTATCTAGTACTTTCGGGTACCAGGCATGATATCTCGTAGGTACCAAATATGATAGTTATGTATCTTGCTGACGTCAATACGATATACATCGAACCTAGTACATATCGTATTAAACATTATATTCAGTAGGTTCCAGATCTGGTATTTAGGTATTATGTTGACATCATCTATTTCATTGGAACGGTATACCATTCTACATTCTATATTGTTTCTGTTAATATGCACCAATAATCCACTCCAACATATTTTTGATGCGATGACTGACGACGCTGAACTTTTTTTTAATGAATTATCATGAGATTGTTTCTTTTCTTTATTTTACACACACAACTCTAAACTGTTGTGTGTGGAGTGCAGGATACGATGGGCCCGATGTTGGCGTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAGCGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAATTAGATGCTTTTGTACTAGAAATTTATGGAATATATAGTGTTGTCATGTTACTAGTGTGCCAGGAATTGAAGCTAAGGATTTTTAGTTTGGAATTTTTTTTCTTTGATCATGATGGGCTGGGTGTGCCACAATTAATGTTATATGATCCATATAATACACCATGCACAATGTAAGATAATGTTACGTACTAGCATGTAATAAGATATTATCCAGTAAGATCGAGTTATTTATCATCT
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CDS seq | ATGGGACGGGTGAAGCTGCAGATCAAGAGGATCGAGAACATCCCGAACAGGCAGGTGACGTTCTCCAAGCGGCGAAACGGGCTGATCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGGATCGAGGACGTGCTCACAAGGTACATCAATCTCCCAGAAAGTGACAGAGGAGGAACTATCCAAAACAGAGAGTATTTGATCAACATGCTCACCCAGCTCAAATGCGAGAGCGACGTCACCGAGGATCTCACTAACACGAGCAGTAAGGCGCCGGTTAACTCCAACATTGAGGAGCTTCAGCAAGAGATCAGGAGATGCCAGCACCAGATGCAGCTCACAGAGGAGCAATTGAGGATGTTTGAGCCGGACCCGGCCAGGTCTGCATCCATGGAGGACGTCGAGGCCAGCGAGAAGTTCATCGCCGGCATCCTCAGCCGCGTCGAGGAGAGGAAGAGGTATTTGCTGTGCAGCATGGGCTCGTTCGACGTGACGGCGTCAACATCTGCCATGCAGCATCTGTATCTACCGCAGCAGCATCAGCACGGGGACATCACTGATAATGGGTTTGGAAGCGATGAGGTGGCCTCGTGGGTCTCTGAGGGGATGCCGCCGACAACCTCGTCGGTGGCGTCGATATTCGCCGGAACTTCAGATTCCATGATGTCTTTTAGAGATCAAGCGGTGTACGACACGATGAGACAAGATGCATGTGTGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACGTCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGATACGATGGGCCCGATGTTGGCGTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAGCGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAA
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Protein seq | MGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEELQQEIRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLLCSMGSFDVTASTSAMQHLYLPQQHQHGDITDNGFGSDEVASWVSEGMPPTTSSVASIFAGTSDSMMSFRDQAVYDTMRQDACVDQTVVPEMGMCHVDQQNQSDDWQAYTSAEFLNALIPPTPFPLDDEDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCSQAPANDGNGLYAAEDIAPVNVG |
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Function | Agamous-like MADS-box protein AGL66 [UniProtKB/Swiss-Prot:Q1PFC2] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os06g0223300 | Os06t0223300-01 | Chr06 | 6372353 | 6376374 | + | irgsp1_rep | ||
CDS seq | ATGGGACGGGTGAAGCTGCAGATCAAGAGGATCGAGAACATCCCGAACAGGCAGGTGACGTTCTCCAAGCGGCGAAACGGGCTGATCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGGATCGAGGACGTGCTCACAAGGTACATCAATCTCCCAGAAAGTGACAGAGGAGGAACTATCCAAAACAGAGAGTATTTGATCAACATGCTCACCCAGCTCAAATGCGAGAGCGACGTCACCGAGGATCTCACTAACACGAGCAGTAAGGCGCCGGTTAACTCCAACATTGAGGAGCTTCAGCAAGAGATCAGGAGATGCCAGCACCAGATGCAGCTCACAGAGGAGCAATTGAGGATGTTTGAGCCGGACCCGGCCAGGTCTGCATCCATGGAGGACGTCGAGGCCAGCGAGAAGTTCATCGCCGGCATCCTCAGCCGCGTCGAGGAGAGGAAGAGGTATTTGCTGTGCAGCATGGGCTCGTTCGACGTGACGGCGTCAACATCTGCCATGCAGCATCTGTATCTACCGCAGCAGCATCAGCACGGGGACATCACTGATAATGGGTTTGGAAGCGATGAGGTGGCCTCGTGGGTCTCTGAGGGGATGCCGCCGACAACCTCGTCGGTGGCGTCGATATTCGCCGGAACTTCAGATTCCATGATGTCTTTTAGAGATCAAGCGGTGTACGACACGATGAGACAAGATGCATGTGTGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACGTCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGATACGATGGGCCCGATGTTGGCGTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAGCGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAA
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Protein seq | MGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEELQQEIRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLLCSMGSFDVTASTSAMQHLYLPQQHQHGDITDNGFGSDEVASWVSEGMPPTTSSVASIFAGTSDSMMSFRDQAVYDTMRQDACVDQTVVPEMGMCHVDQQNQSDDWQAYTSAEFLNALIPPTPFPLDDEDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCSQAPANDGNGLYAAEDIAPVNVG
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0223300 | RBH | 0.0 | 0.0 | 3.138766 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11970 | RBH | 0.0 | 0.0 | 0.807979 |
Nipponbare | IRGSP 1.0 | RAP-db | Os02g0761000 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008460 | RBH | 0.0 | 0.0 | 3.623015 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008320 | RBH | 0.0 | 0.0 | 2.519990 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008320 | RBH | 0.0 | 0.0 | 3.256622 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008460 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008310 | RBH | 0.0 | 0.000000 | 17.506166 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0105700 | RBH | 0 | 0 | 0.872939 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008050 | RBH | 0.0 | 0.0 | 1.090850 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0106400 | RBH | 0.0012605 | 0 | 1.115994 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008520 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008330 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008390 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008450 | RBH | 0.0 | 0.0 | 0.374586 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008240 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008150 | RBH | 0.0 | 0.0 | 0.900616 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008430 | RBH | 0.0 | 0.0 | 2.530809 |