Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0013490 | OGI:05044280 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:17148168-17151333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tatgtgcaggatgaatgttatgcagaagctgtacagctcaggtagattggtttgtgaaactacacaaggttttacatttcaatctcgttaaacacctcacaagaatctgcacgcacactacatatgaaatcccctcattgttcatgtcatatttacagatggatgcaaagtaggttcatttcaagagcaaagttacaaatactggcacgctggtcaggctgcctcggtggagatgatctcgagctcggcccaccagagcggcgacaccttgggggtggcggcgtcgggcggcatggcggtgatctccctgagccgggccgcgacgtcggccatggaggggcgccgcctcgggtcgcggtcggcgcaggaccggacgacggcgtccaggcggtcgacggtctcggcgtggaaggcgccccgcagcgccgggtccatgacgtcccgcagccgccgctccccgcggaggagcgccgccgcccacccctgcaccagcccgccctccgacgccgcgagccgccccgccatcatctccagcagcagcatcccgtacccgtgcaccacgctctccctgtccgccatcgccggcgccgccgccgccgccgccatctcctcctcgcagaagcccacgtcggagatcttggcggcgaagtcgtcggtgaggtagacggtggaggcgtccagcgtccggacgatctccggcggggcgagctggtgcatgtgctccaggcagtaggcgacgccgaccgccacgcgcagccgcgtcggccagtccaggtgcccctcgtccctcgctgcatttcccaccgtcaatgtcagctgccatttttcgtgcttgctacaggtcggggtgtcgaagtaggtagaaatccaaagttccaaagaaaattaccgtggagatgctcgaatagtgtgccgtttggggcgtactcgaacaccatcatcctcgtgaacggctgctcctcctcgcagtagccaagaaggttcacaaagttcttgtggttcaccctcgacaggctcgttatctggaacaaccccccaacacaaatgacacaatgttaggcaccgttatctcgtaaactttttcacaggaatcagtgaatcagttcaatttcatagggacctagggaaaaaaataatcaagtattgcattattggtagtcaaaattaaaataatatcaagggaacgtatcttacacacactaaagattctagatatgatttgtgcatgtactctaattgacaattatttactctggtttttaatacataacgtcattgaccattgtccttatttagcttttctttgcaaatatttaaattacatttaatgataaaccaattcacaataaaataaacaataataatagtaatatttacaaagggaggcagtagtaataccttctttctgaagtgtgcctcgcacttcttggaccagtccttgggcgacgtcttggtggtggagacgacggcgatctcgacgccgctggagagcgtccccttgtacatggtgtactccggcagcgagccgatgacgttgctgaagtcctcgcacgccgcctccagctccgccctcctcaacgccggcacccccgtcacgaacgccctctgcagctgcccgctcagccccgtcgcccacggccgcacgctcctcaccaccttgctcgaccggtagcacgccgcgaacgccgccgccgacgccgcaagaagcaccgacgcccccgccgccgccacaagaacgtagttcgtcttgccgccgccgccgccgcgcctcgttgcgctcccgtccgtcacctccggccggctggtttcgccggcgtcgccggagctagacgccggcggcaacgcgatgctgcgggggcgcgcgtgttcctcgccgcgccgcggcggggccgcgtgctcggcgaccgcggccgacgacgctggcgaaggcgcaggggaaggcgaaggcgagggcgagctcgacgggccctggaccggcggcatgtcgagccatggcggccagtccttgagcggcggcggcggcggcagcagcatcgggagtccgaacgggttcgacggcgtcgacgacgtcgacggccatccggccttgctgccggcctgcctgctccgctgctgctgctgctgctgctgcgaagatgatgatgacttcttggcatggatcaacctgcgaatgattgagcagagatgaggctaaagttgacgagcaattggacaagaacatgcgtgcagcccggatggggtcgaatggttggttgttcagctgtccatctctgacagccacgacaacattcctagcacaaatttttttcctaccattctatatctactttgatttctatggaaaaatgtctttgtgatgaacattcacggataattcaggcaaatttggcctatgcttgttcaaatgcaggggaaacttgtgatggaagagaagaagaaattatgcccaagctgcaacctaattataacactgtgaattattatttccttaaaggaaactctattattgcggttttttgaaaataaactttattactactgcctataattaagagtctctgaattttgtcaaaatttagactgaaattcagggcatgtacgaacatgaaagtgagccaagaaaacatcaatcgttctcaccgagctgcagggcgcacgccttcattccaattcgccgttccatcaacaccacatcataacaatgatttcaaaacatacacaaatcagctaaacagaaaccagaacattcttggacaagctgatcatctgaacaaacaaaaacaaacatacaacacacacctcgccgagcaccatggccgccgccgccgccgccgctgatcccaagctgaagctgcaagcagagcagcagcagcacagccaccgccaccctgctcatcctctccatgaagagcaggacggtcttaagaagggaaagagagagaagcctgcagcaatggcgatgatgatggagctcttgcagaggaggcagggaaagcaatgcaagagagataagcttaagccaagctaagctaggcagcagcaagaagcagaggcgagaagatgatttgggcgtgaccactgcggcgagctagcgagagccacgccgcccacggcacgcggcgacaataaattcttgtgcttggctcgacttggattttttcgacct
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| CDS seq | atggagaggatgagcagggtggcggtggctgtgctgctgctgctctgcttgcagcttcagcttgggatcagcggcggcggcggcggcggccatggtgctcggcgaggcgtgcgccctgcagctcggttgatccatgccaagaagtcatcatcatcttcgcagcagcagcagcagcagcagcggagcaggcaggccggcagcaaggccggatggccgtcgacgtcgtcgacgccgtcgaacccgttcggactcccgatgctgctgccgccgccgccgccgctcaaggactggccgccatggctcgacatgccgccggtccagggcccgtcgagctcgccctcgccttcgccttcccctgcgccttcgccagcgtcgtcggccgcggtcgccgagcacgcggccccgccgcggcgcggcgaggaacacgcgcgcccccgcagcatcgcgttgccgccggcgtctagctccggcgacgccggcgaaaccagccggccggaggtgacggacgggagcgcaacgaggcgcggcggcggcggcggcaagacgaactacgttcttgtggcggcggcgggggcgtcggtgcttcttgcggcgtcggcggcggcgttcgcggcgtgctaccggtcgagcaaggtggtgaggagcgtgcggccgtgggcgacggggctgagcgggcagctgcagagggcgttcgtgacgggggtgccggcgttgaggagggcggagctggaggcggcgtgcgaggacttcagcaacgtcatcggctcgctgccggagtacaccatgtacaaggggacgctctccagcggcgtcgagatcgccgtcataacgagcctgtcgagggtgaaccacaagaactttgtgaaccttcttggctactgcgaggaggagcagccgttcacgaggatgatggtgttcgagtacgccccaaacggcacactattcgagcatctccacgcgagggacgaggggcacctggactggccgacgcggctgcgcgtggcggtcggcgtcgcctactgcctggagcacatgcaccagctcgccccgccggagatcgtccggacgctggacgcctccaccgtctacctcaccgacgacttcgccgccaagatctccgacgtgggcttctgcgaggaggagatggcggcggcggcggcggcgccggcgatggcggacagggagagcgtggtgcacgggtacgggatgctgctgctggagatgatggcggggcggctcgcggcgtcggagggcgggctggtgcaggggtgggcggcggcgctcctccgcggggagcggcggctgcgggacgtcatggacccggcgctgcggggcgccttccacgccgagaccgtcgaccgcctggacgccgtcgtccggtcctgcgccgaccgcgacccgaggcggcgcccctccatggccgacgtcgcggcccggctcagggagatcaccgccatgccgcccgacgccgccacccccaaggtgtcgccgctctggtgggccgagctcgagatcatctccaccgaggcagcctga
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| Protein seq | MERMSRVAVAVLLLLCLQLQLGISGGGGGGHGARRGVRPAARLIHAKKSSSSSQQQQQQQRSRQAGSKAGWPSTSSTPSNPFGLPMLLPPPPPLKDWPPWLDMPPVQGPSSSPSPSPSPAPSPASSAAVAEHAAPPRRGEEHARPRSIALPPASSSGDAGETSRPEVTDGSATRRGGGGGKTNYVLVAAAGASVLLAASAAAFAACYRSSKVVRSVRPWATGLSGQLQRAFVTGVPALRRAELEAACEDFSNVIGSLPEYTMYKGTLSSGVEIAVITSLSRVNHKNFVNLLGYCEEEQPFTRMMVFEYAPNGTLFEHLHARDEGHLDWPTRLRVAVGVAYCLEHMHQLAPPEIVRTLDASTVYLTDDFAAKISDVGFCEEEMAAAAAAPAMADRESVVHGYGMLLLEMMAGRLAASEGGLVQGWAAALLRGERRLRDVMDPALRGAFHAETVDRLDAVVRSCADRDPRRRPSMADVAARLREITAMPPDAATPKVSPLWWAELEIISTEAA |
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| Function | Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0013490 | OsKeNa_05g0013490.01 | Chr05 | 17148187 | 17151333 | - | NAM | ||
| CDS seq | atggagaggatgagcagggtggcggtggctgtgctgctgctgctctgcttgcagcttcagcttgggatcagcggcggcggcggcggcggccatggtgctcggcgaggcgtgcgccctgcagctcggttgatccatgccaagaagtcatcatcatcttcgcagcagcagcagcagcagcagcggagcaggcaggccggcagcaaggccggatggccgtcgacgtcgtcgacgccgtcgaacccgttcggactcccgatgctgctgccgccgccgccgccgctcaaggactggccgccatggctcgacatgccgccggtccagggcccgtcgagctcgccctcgccttcgccttcccctgcgccttcgccagcgtcgtcggccgcggtcgccgagcacgcggccccgccgcggcgcggcgaggaacacgcgcgcccccgcagcatcgcgttgccgccggcgtctagctccggcgacgccggcgaaaccagccggccggaggtgacggacgggagcgcaacgaggcgcggcggcggcggcggcaagacgaactacgttcttgtggcggcggcgggggcgtcggtgcttcttgcggcgtcggcggcggcgttcgcggcgtgctaccggtcgagcaaggtggtgaggagcgtgcggccgtgggcgacggggctgagcgggcagctgcagagggcgttcgtgacgggggtgccggcgttgaggagggcggagctggaggcggcgtgcgaggacttcagcaacgtcatcggctcgctgccggagtacaccatgtacaaggggacgctctccagcggcgtcgagatcgccgtcataacgagcctgtcgagggtgaaccacaagaactttgtgaaccttcttggctactgcgaggaggagcagccgttcacgaggatgatggtgttcgagtacgccccaaacggcacactattcgagcatctccacgcgagggacgaggggcacctggactggccgacgcggctgcgcgtggcggtcggcgtcgcctactgcctggagcacatgcaccagctcgccccgccggagatcgtccggacgctggacgcctccaccgtctacctcaccgacgacttcgccgccaagatctccgacgtgggcttctgcgaggaggagatggcggcggcggcggcggcgccggcgatggcggacagggagagcgtggtgcacgggtacgggatgctgctgctggagatgatggcggggcggctcgcggcgtcggagggcgggctggtgcaggggtgggcggcggcgctcctccgcggggagcggcggctgcgggacgtcatggacccggcgctgcggggcgccttccacgccgagaccgtcgaccgcctggacgccgtcgtccggtcctgcgccgaccgcgacccgaggcggcgcccctccatggccgacgtcgcggcccggctcagggagatcaccgccatgccgcccgacgccgccacccccaaggtgtcgccgctctggtgggccgagctcgagatcatctccaccgaggcagcctga
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| Protein seq | MERMSRVAVAVLLLLCLQLQLGISGGGGGGHGARRGVRPAARLIHAKKSSSSSQQQQQQQRSRQAGSKAGWPSTSSTPSNPFGLPMLLPPPPPLKDWPPWLDMPPVQGPSSSPSPSPSPAPSPASSAAVAEHAAPPRRGEEHARPRSIALPPASSSGDAGETSRPEVTDGSATRRGGGGGKTNYVLVAAAGASVLLAASAAAFAACYRSSKVVRSVRPWATGLSGQLQRAFVTGVPALRRAELEAACEDFSNVIGSLPEYTMYKGTLSSGVEIAVITSLSRVNHKNFVNLLGYCEEEQPFTRMMVFEYAPNGTLFEHLHARDEGHLDWPTRLRVAVGVAYCLEHMHQLAPPEIVRTLDASTVYLTDDFAAKISDVGFCEEEMAAAAAAPAMADRESVVHGYGMLLLEMMAGRLAASEGGLVQGWAAALLRGERRLRDVMDPALRGAFHAETVDRLDAVVRSCADRDPRRRPSMADVAARLREITAMPPDAATPKVSPLWWAELEIISTEAA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0013490 | OsKeNa_05g0013490.02 | Chr05 | 17148168 | 17151196 | - | IsoSeq | ||
| CDS seq | atgccaagaagtcatcatcatcttcgcagcagcagcagcagcagcagcggagcaggcaggccggcagcaaggccggatggccgtcgacgtcgtcgacgccgtcgaacccgttcggactcccgatgctgctgccgccgccgccgccgctcaaggactggccgccatggctcgacatgccgccggtccagggcccgtcgagctcgccctcgccttcgccttcccctgcgccttcgccagcgtcgtcggccgcggtcgccgagcacgcggccccgccgcggcgcggcgaggaacacgcgcgcccccgcagcatcgcgttgccgccggcgtctagctccggcgacgccggcgaaaccagccggccgg
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| Protein seq | MPRSHHHLRSSSSSSSGAGRPAARPDGRRRRRRRRTRSDSRCCCRRRRRSRTGRHGSTCRRSRARRARPRLRLPLRLRQRRRPRSPSTRPRRGAARNTRAPAASRCRRRLAPATPAKPAGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr05 | 17149189 | 17149632 | - | OsKeNa_05g0013490.02 | OsKeNa_05g0013490.02,OsKeNa_05g0013490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.066253 | 0.547271 | 0.588963 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0353500 | RBH | 0.0 | 0.129555 | 1.163349 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g28520 | RBH | 0.0 | 0.073861 | 0.330283 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0353500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013450 | RBH | 0.094579 | 0.000000 | 2.834298 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013970 | SBH | 0.0 | 1.595191 | 1.406122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013320 | RBH | 0.0 | 0.0 | 2.506713 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013350 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013470 | RBH | 0.0 | 0.0 | 3.158707 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0251100 | RBH | 12.942829 | 4.605337 | 6.6834845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0013060 | RBH | 0.000000 | 0.258764 | 0.568101 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0259100 | RBH | 13.4948515 | 1.333623 | 3.4666655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0013280 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0013240 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013380 | RBH | 0.012734 | 0.076520 | 0.835752 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013330 | RBH | 0.000000 | 1.715598 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G013070 | RBH | 0.000000 | 0.0 | 1.336709 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013280 | RBH | 0.000000 | 0.000000 | 0.968832 |
