Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0008000 | OGI:05020660 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:7634439-7638209 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTTTTCCTTAAGGTGGatatgtcttggaatgtgttgatctcacctagcgagctgagccccaagggtctcttgctccgcaaggctgtcattgttagtcttctggaggagatagcaaacaggaaggcctccaaggatcatggttactacattgctgtcagtgagctgaaggcgatatcagaagggaaagtgcgcgagctgaccggagatgttcttttcccagtgacattcacctgcatcacacagaagcctacgaagggcgagatcttagttggctctgtggataagatcctcaagcatggcgtgttcctcaaatctggaccaatagaaagcatcttcctgtcagagaagacactgagcgactacaagtacatcggtggggagaaccctatgttcatgaatgaccactcgaagctggagaaggacaccgctgtgcgcttcaaggtgatgggtttccgctggatggaagctgatcgccagttccagatccttgctaccctggctggtgactatcttgggccactatgaactgcttccacaggttagtggtgatgaatggatctgaaatgtattatctttaacctgctgtctgtagtttgatgtcatgatgatgatgattagaccagtagctgtgatgctggctgttgatgtaagtgacatttggccctatgtttagcatttcagcatgatgcgaattgtcatggccgtttaacctctgtttcctatcgctgctcacagttctcctatgcatatatttgctgcattcctttctgagatatttgcctttgcaacgtcgaatttgcaatatttctctatgcaattgtttccttgtgttacaatcagcttaatatgcaagtaacatcaaaataccccagatgttaccctgacaagcaaatcatttttgccacaaattagtctatgacagctagtagtagttggcacttggcaaatcgtgttgtctgcttcagtttgctctttgctacacactttttgccgagagaagtagaaagcttttaaaTtttacaaagaaatttctttttttcctatgttaattcaaattgagtcaatcatatggtgattcgtgaacgaccatctagcttcaggagaaattaacgatctgcaaccgggtttcagaggaagtttctctgcaaaatgcatctctgatttacagtggagctcgagaaatgaaatagatttaagtctgaattccaattaatctatccatagttggacgcagggctagtcactgattttggcaagtggcaactgattaatccggcccctaaatggcacagtgaattgatgttttttataccgaagggcaacaatttgtttagatgtacaataaaattatttacgacttgttaataatgtgaggcaataataaagcattcactgtccgtagccaacaatataggagatggacttcaattgtgcaatataattttgaagaataaatgaaagaaaaaactgtttttcttttctgaaagttgaccaaaagtcatcattccaagtcgttgccgtgtcgtgtctgatacatcatttttgttttctctatctatcataatcatcatcaatccatgtgtatctttagcatgactgaacaaagttcgccattaacaacctgacttgcctagagccatagcagcctgtgcatgttcatcccatacggtaacaccattagctatgttttcttgtgctttgtactactgcttttatgcctttatcatcctcctttctacctcccatgccgaagaattcatctacaatggattcactgatgctgatcagctaacactcgaaggtgaagcttcaattgacaggaatcgcttagggctaacaagtcgccttaacataggaggttttggccatgccttctacaagtatcctctaaactttagaaagaactcaaatagtcccaatgacccctcctttgctacaacattcgtgttcactattactacttggagagatcagcctcaagaagcaggaagtgatggtattgcctttgtgctttcttccaccaacaagttgataaaccactccttgggaggtcagtacctaggccttttcaatgcgtcgaatacttcacaaaatatattagctatcgagcttgataccttcatgaatcctgatttgaacgacatggatgataaccatgttggaatagatgtcaacagcttgatttcaatcaactcccataccgctgggttctacacctctgatggtggattccaactccttaggcttgccaatggtagatctccaatattgcagctatgggtggactatgatggcaaagctcaccaactaaatgtcaccttaggtcttccctattcccctaaacctgaatatccgctactttcgagcatcgtcaatctctcatccttgttaccaagttcttcgtacattgggttttccgcgtcggtaaattcaccgaaaactagacattttattctaggttggagcttcaaggaaaatgggagagtcccaccccttccttcagtcccagtcacagacccagaaacatatggatggggaggcaacttctttgcgccaccaccacctccacagcttaACacacaccaagttcacaaacactccttgcaaattctcctaccaatagttatgacttcagttatcttgcttcttcttgttgctttccttggttggcggaaaaaagctgggccacaagaagactgggaaatgaagtgcaggccaccatctttcatatacaaagatttatataatgcaacttctgggttcagtgacaaaatgctccttgggaagggagggtttgggaaagtttacagaggatttcttcctgcctctaagcggaatgtcgcgatcaagcgcatctccccagagtcgaagcaagggatgaaggagtttatgtctgaagttgcaatactaggcaatgttcgtcaccggagtctttcagttacttggctatcgcaggaacaagcacgagctcctcttggtttatgattatatgcccaatggcagccttgataaatatttgtatggtcgacacaaattggctttaggttggtctcaaagatttcgcaccatcaaaggtgtcgcgtgtggactcgcttacctccatgaggaatgggagcgtgtgatcatccatcgagatatcaagtcaagcaacgtattgcttgacgaggaaatgaatggaaggttgggtgattttggccttgcaagattacatgatcacagagttgatgcctacacCAcacatgtagcaggcacatatggttacattgctccagagctagctaggcttggaaaatcaaccaagggtaccgatgttttcgcatttggggtgttcatgatggaggctgcacgtggaaataggccaattgaggtgaattcctgtggagaacctcaagcgctagcagatcatgtgctcaatgcgtggcaacgcagttcaatcataaactccatagatccaagtctggaagatcacgttgcagaggaggtagtattagttttaaagcttgggcttctatgttcacattcatcgcccaaggtgaggcctagcatgcgcttagtgatgcaatacctggaaagggaagcaacgctccaggacttcgcatttagtttcttcagcatcaatgaagctaataatgaagtttatggtcagcatgttgtatcaaatccctctgtagcaaccaccataaccactctttctggaggaagatgacggttgttgcagcatgtattttctatatgatcatatacaattttacatcattgtgtcgactg
More
|
||||||||||
| CDS seq | ATGGTTTTCCTTAAGGTGGatatgtcttggaatgtgttgatctcacctagcgagctgagccccaagggtctcttgctccgcaaggctgtcattgttagtcttctggaggagatagcaaacaggaaggcctccaaggatcatggttactacattgctgtcagtgagctgaaggcgatatcagaagggaaagtgcgcgagctgaccggagatgttcttttcccagtgacattcacctgcatcacacagaagcctacgaagggcgagatcttagttggctctgtggataagatcctcaagcatggcgtgttcctcaaatctggaccaatagaaagcatcttcctgtcagagaagacactgagcgactacaagtacatcggtggggagaaccctatgttcatgaatgaccactcgaagctggagaaggacaccgctgtgcgcttcaagtttgatgtcatgatgatgatgattagaccagtagctgtgatgctggctgttgatctaacactcgaaggtgaagcttcaattgacaggaatcgcttagggctaacaagtcgccttaacataggaggttttggccatgccttctacaagtatcctctaaactttagaaagaactcaaatagtcccaatgacccctcctttgctacaacattcgtgttcactattactacttggagagatcagcctcaagaagcaggaagtgatggtattgcctttgtgctttcttccaccaacaagttgataaaccactccttgggaggtcagtacctaggccttttcaatgcgtcgaatacttcacaaaatatattagctatcgagcttgataccttcatgaatcctgatttgaacgacatggatgataaccatgttggaatagatgtcaacagcttgatttcaatcaactcccataccgctgggttctacacctctgatggtggattccaactccttaggcttgccaatggtagatctccaatattgcagctatgggtggactatgatggcaaagctcaccaactaaatgtcaccttaggtcttccctattcccctaaacctgaatatccgctactttcgagcatcgtcaatctctcatccttgttaccaagttcttcgtacattgggttttccgcgtcggtaaattcaccgaaaactagacattttattctaggttggagcttcaaggaaaatgggagagtcccaccccttccttcagtcccagtcacagacccagaaacatatggatggggaggcaacttctttgcgccaccaccacctccacagcttaACacacaccaagttcacaaacactccttgcaaattctcctaccaatagttatgacttcagttatcttgcttcttcttgttgctttccttggttggcggaaaaaagctgggccacaagaagactgggaaatgaagtgcaggccaccatctttcatatacaaagatttatataatgcaacttctgggttcagtgacaaaatgctccttgggaagggagggtttgggaaagtttacagaggatttcttcctgcctctaagcggaatgtcgcgatcaagcgcatctccccagagtcgaagcaagggatgaaggagtttatgtctgaagttgcaatactaggcaatgttcgtcaccggagtctttcagttacttggctatcgcaggaacaagcacgagctcctcttggttggtctcaaagatttcgcaccatcaaaggtgtcgcgtgtggactcgcttacctccatgaggaatgggagcgtgtgatcatccatcgagatatcaagtcaagcaacgtattgcttgacgaggaaatgaatggaaggttgggtgattttggccttgcaagattacatgatcacagagttgatgcctacacCAcacatgtagcaggcacatatggttacattgctccagagctagctaggcttggaaaatcaaccaagggtaccgatgttttcgcatttggggtgttcatgatggaggctgcacgtggaaataggccaattgaggtgaattcctgtggagaacctcaagcgctagcagatcatgtgctcaatgcgtggcaacgcagttcaatcataaactccatagatccaagtctggaagatcacgttgcagaggaggtagtattagttttaaagcttgggcttctatgttcacattcatcgcccaaggtgaggcctagcatgcgcttagtgatgcaatacctggaaagggaagcaacgctccaggacttcgcatttagtttcttcagcatcaatgaagctaataatgaagtttatggtcagcatgttgtatcaaatccctctgtagcaaccaccataaccactctttctggaggaagatga
More
|
||||||||||
| Protein seq | MVFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHSKLEKDTAVRFKFDVMMMMIRPVAVMLAVDLTLEGEASIDRNRLGLTSRLNIGGFGHAFYKYPLNFRKNSNSPNDPSFATTFVFTITTWRDQPQEAGSDGIAFVLSSTNKLINHSLGGQYLGLFNASNTSQNILAIELDTFMNPDLNDMDDNHVGIDVNSLISINSHTAGFYTSDGGFQLLRLANGRSPILQLWVDYDGKAHQLNVTLGLPYSPKPEYPLLSSIVNLSSLLPSSSYIGFSASVNSPKTRHFILGWSFKENGRVPPLPSVPVTDPETYGWGGNFFAPPPPPQLNTHQVHKHSLQILLPIVMTSVILLLLVAFLGWRKKAGPQEDWEMKCRPPSFIYKDLYNATSGFSDKMLLGKGGFGKVYRGFLPASKRNVAIKRISPESKQGMKEFMSEVAILGNVRHRSLSVTWLSQEQARAPLGWSQRFRTIKGVACGLAYLHEEWERVIIHRDIKSSNVLLDEEMNGRLGDFGLARLHDHRVDAYTTHVAGTYGYIAPELARLGKSTKGTDVFAFGVFMMEAARGNRPIEVNSCGEPQALADHVLNAWQRSSIINSIDPSLEDHVAEEVVLVLKLGLLCSHSSPKVRPSMRLVMQYLEREATLQDFAFSFFSINEANNEVYGQHVVSNPSVATTITTLSGGR |
||||||||||
| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008000 | OsKeNa_05g0008000.01 | Chr05 | 7634439 | 7638209 | + | NAM | ||
| CDS seq | ATGGTTTTCCTTAAGGTGGatatgtcttggaatgtgttgatctcacctagcgagctgagccccaagggtctcttgctccgcaaggctgtcattgttagtcttctggaggagatagcaaacaggaaggcctccaaggatcatggttactacattgctgtcagtgagctgaaggcgatatcagaagggaaagtgcgcgagctgaccggagatgttcttttcccagtgacattcacctgcatcacacagaagcctacgaagggcgagatcttagttggctctgtggataagatcctcaagcatggcgtgttcctcaaatctggaccaatagaaagcatcttcctgtcagagaagacactgagcgactacaagtacatcggtggggagaaccctatgttcatgaatgaccactcgaagctggagaaggacaccgctgtgcgcttcaagtttgatgtcatgatgatgatgattagaccagtagctgtgatgctggctgttgatctaacactcgaaggtgaagcttcaattgacaggaatcgcttagggctaacaagtcgccttaacataggaggttttggccatgccttctacaagtatcctctaaactttagaaagaactcaaatagtcccaatgacccctcctttgctacaacattcgtgttcactattactacttggagagatcagcctcaagaagcaggaagtgatggtattgcctttgtgctttcttccaccaacaagttgataaaccactccttgggaggtcagtacctaggccttttcaatgcgtcgaatacttcacaaaatatattagctatcgagcttgataccttcatgaatcctgatttgaacgacatggatgataaccatgttggaatagatgtcaacagcttgatttcaatcaactcccataccgctgggttctacacctctgatggtggattccaactccttaggcttgccaatggtagatctccaatattgcagctatgggtggactatgatggcaaagctcaccaactaaatgtcaccttaggtcttccctattcccctaaacctgaatatccgctactttcgagcatcgtcaatctctcatccttgttaccaagttcttcgtacattgggttttccgcgtcggtaaattcaccgaaaactagacattttattctaggttggagcttcaaggaaaatgggagagtcccaccccttccttcagtcccagtcacagacccagaaacatatggatggggaggcaacttctttgcgccaccaccacctccacagcttaACacacaccaagttcacaaacactccttgcaaattctcctaccaatagttatgacttcagttatcttgcttcttcttgttgctttccttggttggcggaaaaaagctgggccacaagaagactgggaaatgaagtgcaggccaccatctttcatatacaaagatttatataatgcaacttctgggttcagtgacaaaatgctccttgggaagggagggtttgggaaagtttacagaggatttcttcctgcctctaagcggaatgtcgcgatcaagcgcatctccccagagtcgaagcaagggatgaaggagtttatgtctgaagttgcaatactaggcaatgttcgtcaccggagtctttcagttacttggctatcgcaggaacaagcacgagctcctcttggttggtctcaaagatttcgcaccatcaaaggtgtcgcgtgtggactcgcttacctccatgaggaatgggagcgtgtgatcatccatcgagatatcaagtcaagcaacgtattgcttgacgaggaaatgaatggaaggttgggtgattttggccttgcaagattacatgatcacagagttgatgcctacacCAcacatgtagcaggcacatatggttacattgctccagagctagctaggcttggaaaatcaaccaagggtaccgatgttttcgcatttggggtgttcatgatggaggctgcacgtggaaataggccaattgaggtgaattcctgtggagaacctcaagcgctagcagatcatgtgctcaatgcgtggcaacgcagttcaatcataaactccatagatccaagtctggaagatcacgttgcagaggaggtagtattagttttaaagcttgggcttctatgttcacattcatcgcccaaggtgaggcctagcatgcgcttagtgatgcaatacctggaaagggaagcaacgctccaggacttcgcatttagtttcttcagcatcaatgaagctaataatgaagtttatggtcagcatgttgtatcaaatccctctgtagcaaccaccataaccactctttctggaggaagatga
More
|
|||||||
| Protein seq | MVFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHSKLEKDTAVRFKFDVMMMMIRPVAVMLAVDLTLEGEASIDRNRLGLTSRLNIGGFGHAFYKYPLNFRKNSNSPNDPSFATTFVFTITTWRDQPQEAGSDGIAFVLSSTNKLINHSLGGQYLGLFNASNTSQNILAIELDTFMNPDLNDMDDNHVGIDVNSLISINSHTAGFYTSDGGFQLLRLANGRSPILQLWVDYDGKAHQLNVTLGLPYSPKPEYPLLSSIVNLSSLLPSSSYIGFSASVNSPKTRHFILGWSFKENGRVPPLPSVPVTDPETYGWGGNFFAPPPPPQLNTHQVHKHSLQILLPIVMTSVILLLLVAFLGWRKKAGPQEDWEMKCRPPSFIYKDLYNATSGFSDKMLLGKGGFGKVYRGFLPASKRNVAIKRISPESKQGMKEFMSEVAILGNVRHRSLSVTWLSQEQARAPLGWSQRFRTIKGVACGLAYLHEEWERVIIHRDIKSSNVLLDEEMNGRLGDFGLARLHDHRVDAYTTHVAGTYGYIAPELARLGKSTKGTDVFAFGVFMMEAARGNRPIEVNSCGEPQALADHVLNAWQRSSIINSIDPSLEDHVAEEVVLVLKLGLLCSHSSPKVRPSMRLVMQYLEREATLQDFAFSFFSINEANNEVYGQHVVSNPSVATTITTLSGGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.067497 | 0.0 | 0.343878 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0157100 | SBH | 0.0 | 0.542102 | 7.781807 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g13770 | RBH | 0.205210 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0157100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007970 | RBH | 0.013465 | 0.000000 | 0.262176 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004160 | RBH | 0.134519 | 0.0 | 2.334098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007890 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007950 | RBH | 0.210987 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008000 | RBH | 1.191022 | 1.417530 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0116100 | RBH | 0.327409 | 0.2513625 | 0.0873245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007870 | RBH | 0.079438 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0099100 | SBH | 2.2249285 | 4.636801 | 37.394491 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007910 | RBH | 0.034008 | 0.049881 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007830 | RBH | 0.0 | 1.240166 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007990 | RBH | 0.059632 | 0.049710 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008010 | RBH | 0.046264 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G007760 | RBH | 0.145521 | 0.0 | 0.136221 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0008030 | RBH | 0.117370 | 0.0 | 0.0 |
