Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0006850 | OGI:05017590 | 2/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:6327855-6332185 | ||||||||
| Gene Symbol | RMtATPb, atpB, AtpB | ||||||||||
| DNA seq | TATATCGAAGTCCTAGATAAGAAAGTAGAGTAGGCACAcaCAAATCGTTTACAAAAGGCAAAATGTATATGAAAAAAAGATTGATTGAACTTTCCGACGGACTCATTCCATGAGTAAACGATTGAATGGGATTCGTTTGGGCAACGAAATCAAGTGCTGGTCCCCTTTTCTCTCTTATTGAATTAACTAATTCATTTCCTTTTGACTTTTGGATTTTTGGATATTTTTTTGGTGTTGATTTGGCATTATTCAACAAGAAAAAAAATCAAAATTTCGATAAATTCCTTTTTTTTTGAAAATTATGTGATAATTATGAGAACCAATCCTACTACTTCTCGTCCTGGGGTTTCTACAATTGAAGAAAAAAGTACAGGGTGTATCGATCAAATTATTGGACCCATGCTGGATGTCACTTTTCCCCCGGGCAAGTTACCTTATATTCATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGTAAGCAAATTAATGTAACTTGTGAGGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATATATCCGCGCCCGCCTTTATCAAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTAGAGGAAAAATCAGACTATTTGGGGGAGCTGGAGTAGGTAAAACAGTACTCATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTACCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAaaaaaatcttgaggaatcaaaggtagctctagtctatggccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccaagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctttggctacaacatttgcacatttggatgctactaccgtactttctagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgttgcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggaaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttccggagaattagatggcctacccgaacaggctttttatttggtgggtaacatcgatgaagctagcacgaaagctataaacttagaagaggagaacaaattgaagaaatgaaattaaatctttatgtactgactcctaagcgaattatttgggattgtgaagtgaaagaaatcattttatctactaatagtggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacaatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagctgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagcactcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattgacgacaacccaacggtttagttgatacaaagaaaaagggaagaggggtagaaaaaaatattagatagcgaagcgaagtagggccaatgctatctagtaatttttctacctacctacctacctactattggatttgaaccaatgactcccgccgtatgaaagaaatactctaaccactgagttaagtaggcaatttatcaccacaaaggaagaccctttacttcgatcgattatagatcgaatcctttttataagcaaataccgcttcgttattggtatgttattatagtaaacagatcaaaggatatcctctactattagagaatattcatcttcacaagaaattctctatatattaagatatctctgacaagggctatagctcaGttcagtagagcaactcgtttacacgtgcgccaatgcttttcaagggagcttattatgcaatgaacatagtggatcttcttgcaaaatcaatgtcttacttcatggattcgagagaataggagaacagtcgcctgacaaatagttggttcagtccgattcaggtaccaatccaggtgcctaaacaaatagaacctttattgatttgctagttgataaggtaaatatccagcccactaaatgctaggcttaatgaggataagggcctccaaaaaaattcttttcgttctatgaactttaaggtgtatgaagtctcatagtcaactcttgtagcggaacgatagagactctatttcacttaggttgatttaatttaggccggaggcagacctaagtcaaggtaatcctcctttgaaacactttggtattgctcttagatagatcataatacaaataatcaatcagagcgcagggagccatctcattatctttccgtaaagaaaaactatggtggactaactgatctttctatcagttgataaaagatcccaatgcaaaaaaatgcatgttgggtctctgaaacagttcgaatcatttcgataataatccatttgatctgttttaccgagaaggtctacggttcgaatccgtatagccctaATatATGTCCTTTTTTAGATTTTAGGAGAGATATCCTACGTTTCCTTTAGTATAGTTTTCATTTCCCTATTAGTGCTTGTTTATAGACTGGACAGGCGCATGTGCCATAAAATAGAGATAAAAGGATTACCAGAGGCTCATTCATCGAAAATTATAGAGATAGGAAAAGAAaaaatgaatttctatcaaatcaactgcaagatgttctccatcttgcaaattcctactttgtttgaagtatattactttgcttatctatatctatattacctaaatctaaatcaatctacgttctgaaatagagttctttatttttagaattactcctcattaggctacatacattagtcatcctatcttaattaggctctaattcgtagtattttcgtttttattcctttttctagagattctagagaaaatgagacaaagtgaagcgagagagttttgtttctataagaattatgtctccaccatacctaaatagaaaggaaatcaaaaagaaagggagtcgggattccattggatgaatctttaaagaagacgtggcaaagaggaaacaaaggctaaactaagccctttggtttgagaaaaaccgatccttttttcaccgaggaaaagagagaaattctatataaattgacaatgctgacttgaattgactaattcagttccgcctattccacattaatgggagtacatttatgtttctgcttcacgaatatgatattttttgggcatttctaataatagcaagccttattcctattttagcattttggatttcagcacttttagctccggttcgtgaaggaccagagaagctttctagttatgaatcgggtatagaacccatGgggggggcttggttacaattccgaatatgctattacatgtttgcgctagtttttttgtgtttttttgatgtggaaacggtctttctctacccttgggcaatgagtttcgacgtattgggtatatccgtttttatcgaagctttcattttcgtgcttatcctagttgttggtttagtttatgcatggcgaaaaggagccttggaatggtcttaactgaatattcagac
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| CDS seq | ATGCTGGATGTCACTTTTCCCCCGGGCAAGTTACCTTATATTCATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGAAATAATCGAGTTAGAGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATATATCCGCGCCCGCCTTTATCAAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTAGAGGAAAAATCAGACTATTTGGGGGAGCTGGAGTAGgatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctttggctacaacatttgcacatttggatgctactaccgtactttctagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgttgcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggaaatggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacaatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagctgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagcactcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MLDVTFPPGKLPYIHNALVVKSRDTDGNNRVRATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHISAPAFIKLDTKLSIFETGIKVVDLLAPYRRRGKIRLFGGAGVGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPALATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGNGQIGVLPNHAPINTAVDMGPLRIRLLNNQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006850 | OsKeNa_05g0006850.01 | Chr05 | 6328254 | 6330059 | + | NAM | ||
| CDS seq | ATGCTGGATGTCACTTTTCCCCCGGGCAAGTTACCTTATATTCATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGAAATAATCGAGTTAGAGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATATATCCGCGCCCGCCTTTATCAAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTAGAGGAAAAATCAGACTATTTGGGGGAGCTGGAGTAGgatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctttggctacaacatttgcacatttggatgctactaccgtactttctagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgttgcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggaaatggccaaattggcgtattaccaaaccacgcccccattaacacagctgtagatatgggtcccttgagaatacgcctcctcaacaatcaatggttaacggcggttctgtggagcggttttgccagaatagttaataatgagatcatcattttaggaaatgatgcggaactgggtagtgacattgatccggaagaagctcaacaggcacttgaaatagctgaagctaacgtgagtagagctgagggtacgaaagaattggttgaagcgaaggtagcactcagacgagctaggatacgagtcgaggctgttaattggattcccccatctaattga
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| Protein seq | MLDVTFPPGKLPYIHNALVVKSRDTDGNNRVRATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHISAPAFIKLDTKLSIFETGIKVVDLLAPYRRRGKIRLFGGAGVGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPALATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGNGQIGVLPNHAPINTAVDMGPLRIRLLNNQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006850 | OsKeNa_05g0006850.02 | Chr05 | 6327855 | 6332185 | + | IsoSeq | ||
| CDS seq | ATGAAaaaaaatcttgaggaatcaaaggtagctctagtctatggccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccaagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacctactcttagtacagaaatgggttctttgcaagaaagaattacttctactaaaaagggatctataacttcgatccaagcggtttatgtacctgcggacgatttgaccgaccctgctttggctacaacatttgcacatttggatgctactaccgtactttctagaggattagcttccaaagggatttatcctgcagtagatcctttagattcaacctcaactatgttacaacctcggatcgttggcaacgaacattatgaaactgcgcaaagagttaagcaaactttacaacgttacaaagaacttcaggacattatcgcaattcttgggttggatgaattatcggaggaggatcgtttaactgttgcaagagcacgaaaaattgagcgcttcttatcacaaccgttttttgtggcagaagtttttaccggttctccgggaaagtatgttggtcttgcagaaactattaggggatttcaactaatcctttccggagaattagatggcctacccgaacaggctttttatttggtgggtaacatcgatgaagctagcacgaaagctataaacttagaagaggagaacaaattgaag
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| Protein seq | MKKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFQDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPALATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.665132 | 3.436521 | 18.939482 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553000 | SBH | 8.112918 | 9.651805 | 53.495941 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02980 | SBH | 34.785397 | 34.976414 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0553000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006800 | RBH | 2.775689 | 0.000000 | 1.196737 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001450 | SBH | 7.034633 | 0.000000 | 0.752392 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017760 | SBH | 95.055672 | 7.138235 | 87.003059 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017800 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018040 | SBH | 2594.177490 | 135.457016 | 1458.653687 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0017700 | SBH | 557.515228 | 43.3410945 | 37.409964 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017530 | SBH | 242.378647 | 6.233304 | 101.943016 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0019500 | SBH | 85.8620225 | 5.305676 | 7.5884395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017860 | SBH | 150.555099 | 0.800298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017770 | SBH | 260.262146 | 75.550835 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017900 | SBH | 3112.340576 | 184.527969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017930 | SBH | 6.107935 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017970 | SBH | 228.366791 | 25.746792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017450 | SBH | 24.367603 | 6.868968 | 53.431297 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017740 | SBH | 446.197113 | 153.654099 | 868.082825 |
