Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0004220 | OGI:05009310 | 9/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:3415876-3417453 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgcctgattggcatggatacgcggcggccaacgctggggtggcctcggttcgtgctgccgttgctaacgggttcacatcctttcttttctttcccttttttttcgagttcacatcttgtcctttctattcgatttctattggttggtttgtttgtttgttttgaattttggtttgcaatttcatttactttaagctttttatgtgttctcattcattcttgtcttctagtttttgttgatttttctgaaaatccatctcactatcctatccttctttagatggctgatttaaacaacgacaacgtcttccctgccccgcatcttctcactcatccagcaaagcatcatcttgtttctaagactattcactctgttttcaacatcgaggtgaatgtgaggcatcaagaggaagataacaagtctgctttccgtcacttctgtagaatcttaaaaaggctccccattaataagaatctggatagagccgaaatagaggaaactactattccgactgaggtctgcactgggtttgttattgagcagaggggaaatatactttattttctaaccacagcccatgctttggatgattactatgatgcaaagaaccatgaccttaccccaaaagatcttaataaatcatttattttcaaagtcttgtgcatccatcaggagaggcaccttctttctctccaaggagtggatgataagagtgagcatctgaacagatacttctgcgatgcaaaagtagttgcggttaacactcaagttgatctgatgcttcttaagttgaaccgtgaggatatctactactcatatcaagatgcggataattttatcatttgtcccgaggaccatacacgtatcaagctaggaaaatcaccaccagttgagtctgagaatgtctttttacaagggtggccagcattgcgatcacaaacttcagtttgggggcacattagtcatactaacagaagatacgacacacttactagcttgaatgtgaaaggatataagatgaatctgattgaagtgcctgagtttcaatgtgcagccggaacatcgggaagtgcaattctgaatggggcagcacgttgtgttgcggtgaagtgcaattctgaatggggcagcacgttgtgttgcggtttatcacggtatacaaaagaattgtaaagccggatacgcaatcagttatcaagatgtgaaaacttttgtagatactgcacttgcaaatgtaagttcaattttatttccttttaactcttctccttttctcttttcaattgcttagtgacttagtcggttagtcctagttctgtttgttttcttcttttcagctgccaggtgatggtgatggtgatggtgatggtgatggtgatggtgatgatgatgacgacgaggagaatgacgataacgacagcgacagtgactatgatgaaagtgatgaggaagaggaagagagaaagaggaagaggggcaagggcattggcagcggcaGgggtaggggaaggggcagggcgagtgggagtgaaaaggggaggggcagtgggaaGgggaaggcgaagatgagatga
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| CDS seq | atgccgcctgattggcatggatacgcggcggccaacgctggggtggcctcgatggctgatttaaacaacgacaacgtcttccctgccccgcatcttctcactcatccagcaaagcatcatcttgtttctaagactattcactctgttttcaacatcgaggtgaatgtgaggcatcaagaggaagataacaagtctgctttccgtcacttctgtagaatcttaaaaaggctccccattaataagaatctggatagagccgaaatagaggaaactactattccgactgaggtctgcactgggtttgttattgagcagaggggaaatatactttattttctaaccacagcccatgctttggatgattactatgatgcaaagaaccatgaccttaccccaaaagatcttaataaatcatttattttcaaagtcttgtgcatccatcaggagaggcaccttctttctctccaaggagtggatgataagagtgagcatctgaacagatacttctgcgatgcaaaagtagttgcggttaacactcaagttgatctgatgcttcttaagttgaaccgtgaggatatctactactcatatcaagatgcggataattttatcatttgtcccgaggaccatacacgtatcaagctaggaaaatcaccaccagttgagtctgagaatgtctttttacaagggtggccagcattgcgatcacaaacttcagtttgggggcacattagtcatactaacagaagatacgacacacttactagcttgaatgtgaaaggatataagatgaatctgattgaagtgcctgagtttcaatgtgcagccggaacatcgggaagtgcaattctgaatggggcagcacgttgtgttgcgctgccaggtgatggtgatggtgatggtgatggtgatggtgatggtgatgatgatgacgacgaggagaatgacgataacgacagcgacagtgactatgatgaaagtgatgaggaagaggaagagagaaagaggaagaggggcaagggcattggcagcggcaGgggtaggggaaggggcagggcgagtgggagtgaaaaggggaggggcagtgggaaGgggaaggcgaagatgagatga
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| Protein seq | MPPDWHGYAAANAGVASMADLNNDNVFPAPHLLTHPAKHHLVSKTIHSVFNIEVNVRHQEEDNKSAFRHFCRILKRLPINKNLDRAEIEETTIPTEVCTGFVIEQRGNILYFLTTAHALDDYYDAKNHDLTPKDLNKSFIFKVLCIHQERHLLSLQGVDDKSEHLNRYFCDAKVVAVNTQVDLMLLKLNREDIYYSYQDADNFIICPEDHTRIKLGKSPPVESENVFLQGWPALRSQTSVWGHISHTNRRYDTLTSLNVKGYKMNLIEVPEFQCAAGTSGSAILNGAARCVALPGDGDGDGDGDGDGDDDDDEENDDNDSDSDYDESDEEEEERKRKRGKGIGSGRGRGRGRASGSEKGRGSGKGKAKMR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0004220 | OsKeNa_05g0004220.01 | Chr05 | 3415876 | 3417453 | + | NAM | ||
| CDS seq | atgccgcctgattggcatggatacgcggcggccaacgctggggtggcctcgatggctgatttaaacaacgacaacgtcttccctgccccgcatcttctcactcatccagcaaagcatcatcttgtttctaagactattcactctgttttcaacatcgaggtgaatgtgaggcatcaagaggaagataacaagtctgctttccgtcacttctgtagaatcttaaaaaggctccccattaataagaatctggatagagccgaaatagaggaaactactattccgactgaggtctgcactgggtttgttattgagcagaggggaaatatactttattttctaaccacagcccatgctttggatgattactatgatgcaaagaaccatgaccttaccccaaaagatcttaataaatcatttattttcaaagtcttgtgcatccatcaggagaggcaccttctttctctccaaggagtggatgataagagtgagcatctgaacagatacttctgcgatgcaaaagtagttgcggttaacactcaagttgatctgatgcttcttaagttgaaccgtgaggatatctactactcatatcaagatgcggataattttatcatttgtcccgaggaccatacacgtatcaagctaggaaaatcaccaccagttgagtctgagaatgtctttttacaagggtggccagcattgcgatcacaaacttcagtttgggggcacattagtcatactaacagaagatacgacacacttactagcttgaatgtgaaaggatataagatgaatctgattgaagtgcctgagtttcaatgtgcagccggaacatcgggaagtgcaattctgaatggggcagcacgttgtgttgcgctgccaggtgatggtgatggtgatggtgatggtgatggtgatggtgatgatgatgacgacgaggagaatgacgataacgacagcgacagtgactatgatgaaagtgatgaggaagaggaagagagaaagaggaagaggggcaagggcattggcagcggcaGgggtaggggaaggggcagggcgagtgggagtgaaaaggggaggggcagtgggaaGgggaaggcgaagatgagatga
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| Protein seq | MPPDWHGYAAANAGVASMADLNNDNVFPAPHLLTHPAKHHLVSKTIHSVFNIEVNVRHQEEDNKSAFRHFCRILKRLPINKNLDRAEIEETTIPTEVCTGFVIEQRGNILYFLTTAHALDDYYDAKNHDLTPKDLNKSFIFKVLCIHQERHLLSLQGVDDKSEHLNRYFCDAKVVAVNTQVDLMLLKLNREDIYYSYQDADNFIICPEDHTRIKLGKSPPVESENVFLQGWPALRSQTSVWGHISHTNRRYDTLTSLNVKGYKMNLIEVPEFQCAAGTSGSAILNGAARCVALPGDGDGDGDGDGDGDDDDDEENDDNDSDSDYDESDEEEEERKRKRGKGIGSGRGRGRGRASGSEKGRGSGKGKAKMR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.451923 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0147100 | SBH | 1.994917 | 3.120137 | 4.375339 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0147100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004180 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004370 | SBH | 0.0 | 0.000000 | 0.095244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004300 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004410 | SBH | 0.0 | 0.330491 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0049300 | RBH | 0 | 0.0386325 | 1.1802085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003100 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0052400 | SBH | 0.1529645 | 0.2779415 | 7.365747 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004100 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004340 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004360 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004420 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004130 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004330 | RBH | 0.0 | 0.0 | 0.000000 |
