Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0147100 | OGI:05007640 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:2703692-2705361 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATCACAACATGGTGGAGGGTCACCAAACCATGCAAAACTTTAAACAGAATCTGTGCTACAGTGTCAACGAGTAAAAACATCTGAAACAAAATTCAATTGGACGTTTGCTCTACTATCCAAGTGCTTCAATGATGAATCAGTTGTCACTTCTGTGATTTCTTTTGTTGAATCACCTTCTCTCGAGGAAAAATTCCCCACTCAGTTAGCTTCTTACATATATCAGAAAGTGAAACAAAGCATGAAAAACATTCCTTACCACCTCCTTGAAGTAGACCAACAAAATTGGCTCTGCAATTAAGCAACGGTGCTCCTGAGCTACCCTCTGCTACCATCATATCCACCTCAATTAAATTCATATTATAGCCATACTCATTGGTGTTACTGACATCGTCATAGTGTCTGGAAGGATGTGATATGCGCCCTACAGATGTTGCCCTGTTCATACAAGGCGGCCACGAGATCATCACCACTTACTCTAGCGAGCACGGCAAGTTCTGGCTTGCAACCAATGGAGGATGTTGGAATCTGCATTGCTTCCCTTTCAGATTTAGGAGTTTTGATTTGTCCACGAGAACCAACAAGATATCCTTCTTGCAATCCACACGGGTGACAATGGCTTCAGTAAATTTTCTTTCTCCGCCCAAACCGTTGTTTTGTTGGTGATCGCAGACCACTTCAGTATCGAACAAGCGGTTGATGTCCTGAACGGAGATCTCTTTGGTTGCTGTGTAAACATGATCAATCGTGTGCGCACATGTTAAGAGGTAAAGTGAATTCCCATTCTCAGCTACGACAGAGCAAGTCGCATACCCTACCACCTTGCTCCGTTCAATTCTCTTCAGAGCAGGTACAACCTCCAGGGCATCCAGAGTACGCTTGACTTCTGCAGCATGGGGTTTAAACCTGACAGACAAGATTGATTCTCTACTTTTGACGGACACCCATTTCTCCAGCTCATTTAAGAACACTGTGGGAGGATGGTCAGCCATGGAGCCTTCAGGCGAAGCAACAGTCGAACTGGTGATGTCTCGACAGCAACAAGCAAACTGGGGGCCTGGGGCGGCGACAGAGAAAACAAGACAGCCGAACTGCAGACGCCACGCGCGATGGCCGTGGTGGAGGACGAGCAGTGAGGATGCTGGCCGTGGGATTAGGGGCGGAGGCGGGGGGGCGATGCGGTGGCGTGGCCGGAGCTGCGGATTTCCGGGGGCTGCGGTGGCGGAGCACACTCCCCCTTCAGGCGTTGGAGAGGTGGGCGGCGGAGGACCTCCCCCTTCTTCCCCCCGACCCTAGCCGCAGAACCCTCTGTGCACGCGAGAAGGCGGCGGAGATCGGCGGCGATGATCGAGCGTTCACCCGTCCGATGAGTTGCGGAGGGCGGTGGCGGCGGCGGCGACCGGGTGGCGGAGGACCTCCCCCTTCTTCCCCCCGACCCTACCCTCTGTGCACGGGAGAAGGCGGCGGAGATCGGCGGAGATCGGCGGAGATGATCGAGCGTTCAGCCGTCCGATGAGTTGCGGAGGGGCGGTGGCGGCGGCCGGCAGCGGCGGCCGGCGGCGGCGGCGGCGGCGGGTGGCGGAGGACCTCCCCCTCCTCCCTAACCCTAGCCGCGGAGTCCCCGCGGCTTGCGCCCAGAGTTTTCAATTTTTTTTTCCTTTTCTTTTCTTTT
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| CDS seq | GGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCGCCCACCTCTCCAACGCCTGAAGGGGGAGTGTGCTCCGCCACCGCAGCCCCCGGAAATCCGCAGCTCCGGCCACGCCACCGCATCGCCCCCCCGCCTCCGCCCCTAATCCCACGGCCAGCATCCTCACTGCTCGTCCTCCACCACGGCCATCGCGCGTGGCGTCTGCAGTTCGGCTGTCTTGTTTTCTCTGTCGCCGCCCCAGGCCCCCAGTTTGCTTGTTGCTGTCGAGACATCACCAGTTCGACTGTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGTTCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAA
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| Protein seq | GRGEEGGGPPPPTSPTPEGGVCSATAAPGNPQLRPRHRIAPPPPPLIPRPASSLLVLHHGHRAWRLQFGCLVFSVAAPGPQFACCCRDITSSTVASPEGSMADHPPTVFLNELEKWVSVKSRESILSVRFKPHAAEVKRTLDALEVVPALKRIERSKVVGYATCSVVAENGNSLYLLTCAHTIDHVYTATKEISVQDINRLFDTEVVCDHQQNNGLGGERKFTEAIVTRVDCKKDILLVLVDKSKLLNLKGKQCRFQHPPLVASQNLPCSLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0147100 | OsNip_05t0147100-01 | Chr05 | 2703819 | 2705345 | - | RAP2018-11-26 | ||
| CDS seq | GGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCGCCCACCTCTCCAACGCCTGAAGGGGGAGTGTGCTCCGCCACCGCAGCCCCCGGAAATCCGCAGCTCCGGCCACGCCACCGCATCGCCCCCCCGCCTCCGCCCCTAATCCCACGGCCAGCATCCTCACTGCTCGTCCTCCACCACGGCCATCGCGCGTGGCGTCTGCAGTTCGGCTGTCTTGTTTTCTCTGTCGCCGCCCCAGGCCCCCAGTTTGCTTGTTGCTGTCGAGACATCACCAGTTCGACTGTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGTTCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAA
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| Protein seq | GRGEEGGGPPPPTSPTPEGGVCSATAAPGNPQLRPRHRIAPPPPPLIPRPASSLLVLHHGHRAWRLQFGCLVFSVAAPGPQFACCCRDITSSTVASPEGSMADHPPTVFLNELEKWVSVKSRESILSVRFKPHAAEVKRTLDALEVVPALKRIERSKVVGYATCSVVAENGNSLYLLTCAHTIDHVYTATKEISVQDINRLFDTEVVCDHQQNNGLGGERKFTEAIVTRVDCKKDILLVLVDKSKLLNLKGKQCRFQHPPLVASQNLPCSLE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0147100 | OsNip_05t0147100-02 | Chr05 | 2703692 | 2705361 | - | IsoSeq | ||
| CDS seq | AAAGAAAAGAAAAGGAAAAAAAAATTGAAAACTCTGGGCGCAAGCCGCGGGGACTCCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCAACTCATCGGACGGCTGAACGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGTGCACAGA
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| Protein seq | KEKKRKKKLKTLGASRGDSAARVREEGEVLRHPPPPPPPAAAAGRRHRPSATHRTAERSIISADLRRSPPPSPVHR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.994917 | 3.120137 | 4.375339 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g05440 | SBH | 0.538207 | 0.503320 | 0.506854 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0147100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003260 | SBH | 0.302942 | 11.705957 | 4.855637 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0003320 | SBH | 0.745198 | 3.255596 | 3.400922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0003270 | SBH | 2.404997 | 7.180542 | 9.158979 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0003330 | SBH | 0.016955 | 0.034875 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0003390 | SBH | 0.337452 | 3.716137 | 8.604010 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0051400 | RBH | 0.11697 | 0.361256 | 2.708009 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003170 | SBH | 0.076623 | 0.462887 | 2.218844 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0039700 | RBH | 0 | 0.0071695 | 0.201369 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0003290 | RBH | 0.0 | 0.074001 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0003210 | SBH | 0.298790 | 13.640708 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0003320 | SBH | 1.509657 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0003340 | SBH | 0.417668 | 0.704390 | 1.615439 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0003390 | SBH | 0.105728 | 0.890604 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003210 | SBH | 0.490714 | 0.664962 | 2.322860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0003410 | SBH | 0.583593 | 0.815062 | 10.969827 |
