Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0028200 | OGI:04064790 | 3/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:30566244-30570062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtcccttcagactctggctagtattatgctcaacatgttctcatgaaacagtagttgtataactatttttatgttctccttgtgaaaaagtagtaatatgaactgacgtatggttccaaactttcagattcagaactacgattattggattgctagatagtgcggcagcggcacagctttggaaaccaacagtgtggcaaactggcagttacatgcttgaaggttttagttcccatactctcagtgttctcaaatggtatgcggtcttgaacatttgcatttcggaagatgggtatgcttctgtgttactgcttaggtatttagctaaccagatattccagcaaagcagaacagatttcaggagtatttatttttcatgtttgagctataaatagactactatttgatccacctgtgacgctaatttataccattcctgggagttgttaagtatgtcattttgtttccttgatggtcgatctagtaaacaccgttggaaaatgttttcctcctttagttcatgttgttttatcttaaaacttcagaacatctccaatttctgaacatgtacagtactgatatttgaagtaaaattgtgtattttttatctattttttggaaacattccaccctcttatcactggatgaatattacaaacaagggaacaaactgtacaatggcaagacaagtgaacgacacgatggtcaaaagaagagaagaaaaactagtgtgcctagcacactcttgaagcgcaattgaacctctgtaactccggtctgtcggcttcttcatattgagttgtacggttacttaattgccttctcactgatgtccatgtcaaagtaattcattttttttgttatgtccactaaatcaggatgcacagtatttaacgtgctgcccaacttcatacttgcaatctcgcttaactagtgacagaatggtaacattgtaagtgcctcactactattaatcttcttcctttacaattagatgcatactgttggaagttaatgtcaaattatattattacaatgatacttcagttctgtatatcatctccttggaatccccatgtcctcacaaaaagtgtgattggttcaggcagtcttcttctactgacagaggcatgaaaatggtactttctggtggatgcaactttatctgttcaaaatgctaatgtgtcaatggtagacgtaatttttggaccacaggttgtaaaatcagttctgaatctcctaggaccttgatgtcttggttgcagcctctgcaagctacaaatctcttcccttgtgctatcctcaatgacttgctcttcattttgttcatccatttatgcagtgaaccaaagcgccttagattagactgtttgcactctattaccgggaattgttgcagcgaacttccaaacaggtatcctaaatcattatttgacattttttctcaaagtttgcaaatactaatttgatccacagttattgtcatttcatagtaacttctcattgagattacacactattgttttggggttttttcggcaggttgtcacttatgaggaattagtagtgtttggctagtcatggcataacaactgtggaaaacaatgagtgttcagtgttttgctacttggattaaggtttgcagttctcttgctccagtgctatatttctgacacatacaaggtgtactagaatccttcattcttatagttatgttgcttaacgaaatttactggtgtacagaacactcacaagaatagccattacatcatattagttcattgtggagtcccttcagatctcaggttaatattatatggaacgcgttaatatgagaggtacgtctttagctgttttatgttctactcacgaaaaagtagtaatatgaagatatgtatggtttttaactttcagattcataactatgattgttggattgcttgatatgtatcgatatatgacccagcttttggaaccaacaatgcagtagtaatatgcttgaaggtatagcttccataatctccaaatattttaaactattttgccatcttgactcctgaacacgatttgcactttaatggatgtgaatgcttccatgtatataaaagaagaaatcgcgatgtggagggtagctgggatcttctcccaattcggcgagtaatcgttgttgtattgtctctttctccttcgtttgttcacgctgtgtctgggatctctcccggactagcgcgacattgtaatgtcgctgtaacattcctttgttttcctcctcaatcttaatgaaattggtcggccaacctttggccgacccggcaaaaaagaatgcttccatgttactgcttagttattcaactgacctgcactccatagcacaccagtacaagtttgcaggagaacttatattttcattgtttgagctacaaatagattaccatttgattctcatgtgtcagttctttgtgctattcatgaaaacttccttattaagtatgccatgttctttccttcaatctagtattggaattaccattgggaaatgtttttctttcccaatccaactttgttgatcttaaggcttcagaacttctacgttttctaaacatttaaattgataatgtttgaagggcattgttttttattcttcatatcaagttgtgctgttatgtatttttcttctcattgctttccatgataaactggttagatttttgaaatgtccatctcttccgaatatttacatcctgcccaactacatggaatcctcatatgagctgacaaaaggtgtattggtttaggtaaatcttctattgacaccaactacatgaaatcggtactgtccaagggatgcagcttaatctgttcaaggcgctaatgtgccaatgccagatgtaatttttgaaccacatgttgcataatatgtagtgagttcccttgttccctatgaacttaaagtcttgtttgcatcctctgcaccccaaaatcccttgcttgtggtatcgtcaatgacttgatgtgcattctgttcatcccttatgcagggaacaaaaggcttagttcaatgaacataaatgactggaattattgcaatgaacgtccaaacagtctagctccttccctttatatggtgagtgctatacaacttgttctagttctttcaaactttagtagctactgcaaagtatttactctgttgagaagtacttacatttttgttgtccactttggcagaagaagacataatatggataagtgctcaattgcactctcttctcagcggataaatggcaattgggcaattgatctccacccggtgatctccacccaagctcaacttgaattagatatgcttatgacgactttacaatcccagcagatacatcctgaaagaccagataacagaagctgtacactgagcccggttggatttacgacaacagcatactatgagctaataacatatcatggcatcctatggcgcccggcacacttcatctggattaaagcaataccaaacacctgcaaaatcttcctttggctagcctttcggggaaggctaaacacaaatgataacagggtgaagaaatgctgggcatctgatccacattgtgcggtttgcccggctatagaaacagctaatcacatcattctacgctgcaagttagccactgaaatctggaacaaactcaacctccttgatcaggcaattcagagtgctgacattctacagttcaccgagcatgtcctgggaattctaccgactcaacttaaactgggatggccaatatgcttcgctgcctgttcacacagcttatga
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| CDS seq | atggagtcccttcagactctggctagtattatgctcaacatattcagaactacgattattggattgctagatagtgcggcagcggcacagctttggaaaccaacagtgtggcaaactggcagttacatgcttgaaggttttagttcccatactctcagtgttctcaaatgtgaaccaaagcgccttagattagactgtttgcactctattaccgggaattgttgcagcgaacttccaaacagatttttgaaatgtccatctcttccgaatatttacatcctgcccaactacatggaatcctcatatgagctgacaaaagggaacaaaaggcttagttcaatgaacataaatgactggaattattgcaatgaacgtccaaacagtctagctccttccctttatatgcggataaatggcaattgggcaattgatctccacccggtgatctccacccaagctcaacttgaattagatatgcttatgacgactttacaatcccagcagatacatcctgaaagaccagataacagaagctgtacactgagcccggttggatttacgacaacagcatactatgagctaataacatatcatggcatcctatggcgcccggcacacttcatctggattaaagcaataccaaacacctgcaaaatcttcctttggctagcctttcggggaaggctaaacacaaatgataacagggtgaagaaatgctgggcatctgatccacattgtgcggtttgcccggctatagaaacagctaatcacatcattctacgctgcaagttagccactgaaatctggaacaaactcaacctccttgatcaggcaattcagagtgctgacattctacagttcaccgagcatgtcctgggaattctaccgactcaacttaaactgggatggccaatatgcttcgctgcctgttcacacagcttatga
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| Protein seq | MESLQTLASIMLNIFRTTIIGLLDSAAAAQLWKPTVWQTGSYMLEGFSSHTLSVLKCEPKRLRLDCLHSITGNCCSELPNRFLKCPSLPNIYILPNYMESSYELTKGNKRLSSMNINDWNYCNERPNSLAPSLYMRINGNWAIDLHPVISTQAQLELDMLMTTLQSQQIHPERPDNRSCTLSPVGFTTTAYYELITYHGILWRPAHFIWIKAIPNTCKIFLWLAFRGRLNTNDNRVKKCWASDPHCAVCPAIETANHIILRCKLATEIWNKLNLLDQAIQSADILQFTEHVLGILPTQLKLGWPICFAACSHSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0028200 | OsKeNa_04g0028200.01 | Chr04 | 30566244 | 30570062 | + | NAM | ||
| CDS seq | atggagtcccttcagactctggctagtattatgctcaacatattcagaactacgattattggattgctagatagtgcggcagcggcacagctttggaaaccaacagtgtggcaaactggcagttacatgcttgaaggttttagttcccatactctcagtgttctcaaatgtgaaccaaagcgccttagattagactgtttgcactctattaccgggaattgttgcagcgaacttccaaacagatttttgaaatgtccatctcttccgaatatttacatcctgcccaactacatggaatcctcatatgagctgacaaaagggaacaaaaggcttagttcaatgaacataaatgactggaattattgcaatgaacgtccaaacagtctagctccttccctttatatgcggataaatggcaattgggcaattgatctccacccggtgatctccacccaagctcaacttgaattagatatgcttatgacgactttacaatcccagcagatacatcctgaaagaccagataacagaagctgtacactgagcccggttggatttacgacaacagcatactatgagctaataacatatcatggcatcctatggcgcccggcacacttcatctggattaaagcaataccaaacacctgcaaaatcttcctttggctagcctttcggggaaggctaaacacaaatgataacagggtgaagaaatgctgggcatctgatccacattgtgcggtttgcccggctatagaaacagctaatcacatcattctacgctgcaagttagccactgaaatctggaacaaactcaacctccttgatcaggcaattcagagtgctgacattctacagttcaccgagcatgtcctgggaattctaccgactcaacttaaactgggatggccaatatgcttcgctgcctgttcacacagcttatga
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| Protein seq | MESLQTLASIMLNIFRTTIIGLLDSAAAAQLWKPTVWQTGSYMLEGFSSHTLSVLKCEPKRLRLDCLHSITGNCCSELPNRFLKCPSLPNIYILPNYMESSYELTKGNKRLSSMNINDWNYCNERPNSLAPSLYMRINGNWAIDLHPVISTQAQLELDMLMTTLQSQQIHPERPDNRSCTLSPVGFTTTAYYELITYHGILWRPAHFIWIKAIPNTCKIFLWLAFRGRLNTNDNRVKKCWASDPHCAVCPAIETANHIILRCKLATEIWNKLNLLDQAIQSADILQFTEHVLGILPTQLKLGWPICFAACSHSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.290317 | 0.495517 | 2.416950 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51590 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028120 | RBH | 0.000000 | 0.000000 | 0.664531 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0329600 | RBH | 0.4359775 | 0.92369 | 0.7876005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0507000 | SBH | 0.2745435 | 0.2969485 | 0.9896195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027380 | SBH | 0.054452 | 0.199891 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026740 | SBH | 0.721525 | 4.148806 | 0.973180 |
