Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0027740 | OGI:04092930 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:30213334-30216635 | ||||||||
| Gene Symbol | RGAe | ||||||||||
| DNA seq | atgaaggtccttcacaaactgttcttcggaccttcactgagtgatgatgatcatgttgacaagctccgacatggagatgatgaagtgacaatgaaggccagctccgacggggaactggtgatgattaaagccaactctgacagcgagttggtgatgtagaaaagacgatgaagagatgaactggcatgactttgacgaattgagggtaagcaatggatttggattgactcgataaattgtagagaaatttgactcaatgatagtagcagacactaagtagtagcaaaagagatgaactggtgcagattcaacaaattaaaggatatgcattggagtattggacttggatggacttgatacgaaatatagtaaattgatgaccaagacatgaaattgatttgaaggcttatcgatagtagcggctgcaaaaagaacaatgacagtagcaggaacccattcttcaatcactaattagctgtaacccagctgcataaccaaagagtccaagagcctcaaatctgctcctatctatcctgttgctgcttgaccatgagcatacacgcaacagaaaaaacaaagacggagagaggggttgatgtggatctgaagttcaggaatagcctgggacgatgagaagatgatgacgacgagcatcggcggctggccggctcgatgggtggacggcagcggcttgccgcaatggacgacgagggcctggccggcggaggacgagcacccgcgacgggggcactgattggctgattgctgctcctgtttgtttgctcattggagatgaactggagaacgacaagctcgctgctgctgccgcttgaagacgagaaagcaacaatcagcgatgacgactgcctttgatgcggcgggcggcggcccagatctgggcgggacggatggcgccgcgaccggcggcgatgaccgcgacttccgccgcgatgggctgtcgatggacttgatgacaggagaacgaggaagtggtgctgctgctagaacctttgctgctgcttttgcttcttctgcttcgcttgctgcttgacgagggatgaatgggactgagctgacgacggtgctgttgcacttactactactcaatgaggatgtggacgggttagttgggctcgccggcggcgagccgccgccggcgtgccggcgtggactcggatcgacggctagggtttgctcccttgctctgataccatgtcacttttggagagaagatagaaattggggatttcaactattgcaattgacttagctcaaagagcatataaatatgtacaagagaagtagaaatgtctataataccctcaatactcttaacacacacgtgctcctgcacttccatgggggacttgaattccagtttaagggtcctgaagattgaacagtgccctgttctgaaggtctttccactgtttcagaactcccagcaatttaaaatcgagcgaatgtcatggttgtctagtcttaccaagcttaccatcaatgattgtcctcatttgcatgtgcacaatcctcttccgccttcaactattgtttcggaattatttatcgctggagtttcaacacttccaagggtggaggggtcatcccacggaacattaagaattggacgtcatcctaatgatattttcagttttgattccgatgatattttagagctaatgatattggatgataaatctctatcattccatagcttgaggtccctaactagattggtaatagatggttgcaaaaaccttatgtctgttttatttgaaagtttaaggcaactcttgcgtttgaagagtttggggatatacaactgcccacaacttttctcttcaaatgtcccatcggagcttaccagtgaagacacgacaggtgcaaatcgcaacgccctcccttctctcgaatgtcttgatattgcttcttgtggaattaatgggaagtggctatctctgatgctgcaacatgcggaggtcctacagaaattgagtataacctcgtgttggcagataagagggctatcaataggagaggaagaaaatggtcatccaaatcttatgtcagctacagaggcttcgtcgtcaggatatccaagtcgagacgaacttttgcaccttccattaaatctcatcccatctctgaagaaggtaactattagattctgcagtttaagattttatggaaacaaggaaggtttcgctagatttaccttccttgagggcatagcaatttcgcgatgccctgagctgatctcgtccttggtgcataacaacagaaaggatgagcaggtgaacggaagatggctcctcccgccatcaattgtagaacttgagattcaagatgataattatctacaaatgttgcagccctgctttccagggagcctcacccacctgaaaagactacaagtacagggaaacccaaatttaacatctctgcagctgcattcctgcacagagctccaagagttgataattcaaagctgtaggtcacttaattctctacaaggcttgcaatcactctgcaacctcaggttgctgcgggcatacagatgcctcggcgatcttggaggagatgaaaggtgtctccttccgcaatcaattgaggaacttgatatcgacgagtattttcaagaaactctgcagccattctttccaaggaatctcacctgcctaaaaaaattacgagtatcaggcactacaagttttaaatctctagaactgatgtcatgcactgcactcgaacatttgaagattgaaggttgtgcatcgcttgctacattagtgggcttgcaatccctccacagcctcaggcatttggaagtatttagatgccctagcttgcctctatgtttggagagtttgtcagggcagggctatgagctatgccctcgattggaaaggctccagatcgatgacctctctatccttactacgtcgctctgccagcacctcatctcagtccaattcctagagctttacggagatccatacctttacattcgtggagtcgaagtggcaagactaacggatgagcaagagagagcgcttcagctcctcacgtccttgcaagagctccaattcaagtctcatgacagtcttgtagatcttcctacagggctgcataatcttccttccctcaagaggttgaagatcgataattgcaagagcatcatgaggctgccagagaagggtctcccaccttcgttggaagaattgcatatcagcaattgcagcaaagagctagctgaccattgcagaatgctagaaagcaagctgatggtatcaactgattga
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| CDS seq | atgaaggtccttcacaaactgttcttcggaccttcactgagtgatgatgatcatgttgacaagctccgacatggagatgatgaagtgacaatgaaggccagctccgacggggaactggtgatgattaaagccaactctgacagcgagttgattgaacagtgccctgttctgaaggtctttccactgtttcagaactcccagcaatttaaaatcgagcgaatgtcatggttgtctagtcttaccaagcttaccatcaatgattgtcctcatttgcatgtgcacaatcctcttccgccttcaactattgtttcggaattatttatcgctggagtttcaacacttccaagggtggaggggtcatcccacggaacattaagaattggacgtcatcctaatgatattttcagttttgattccgatgatattttagagctaatgatattggatgataaatctctatcattccatagcttgaggtccctaactagattggtaatagatggttgcaaaaaccttatgtctgttttatttgaaagtttaaggcaactcttgcgtttgaagagtttggggatatacaactgcccacaacttttctcttcaaatgtcccatcggagcttaccagtgaagacacgacaggtgcaaatcgcaacgccctcccttctctcgaatgtcttgatattgcttcttgtggaattaatgggaagtggctatctctgatgctgcaacatgcggaggtcctacagaaattgagtataacctcgtgttggcagataagagggctatcaataggagaggaagaaaatggtcatccaaatcttatgtcagctacagaggcttcgtcgtcaggatatccaagtcgagacgaacttttgcaccttccattaaatctcatcccatctctgaagaaggtaactattagattctgcagtttaagattttatggaaacaaggaaggtttcgctagatttaccttccttgagggcatagcaatttcgcgatgccctgagctgatctcgtccttggtgcataacaacagaaaggatgagcaggtgaacggaagatggctcctcccgccatcaattgtagaacttgagattcaagatgataattatctacaaatgttgcagccctgctttccagggagcctcacccacctgaaaagactacaagtacagggaaacccaaatttaacatctctgcagctgcattcctgcacagagctccaagagttgataattcaaagctgtaggtcacttaattctctacaaggcttgcaatcactctgcaacctcaggttgctgcgggcatacagatgcctcggcgatcttggaggagatgaaaggtgtctccttccgcaatcaattgaggaacttgatatcgacgagtattttcaagaaactctgcagccattctttccaaggaatctcacctgcctaaaaaaattacgagtatcaggcactacaagttttaaatctctagaactgatgtcatgcactgcactcgaacatttgaagattgaaggttgtgcatcgcttgctacattagtgggcttgcaatccctccacagcctcaggcatttggaagtatttagatgccctagcttgcctctatgtttggagagtttgtcagggcagggctatgagctatgccctcgattggaaaggctccagatcgatgacctctctatccttactacgtcgctctgccagcacctcatctcagtccaattcctagagctttacggagatccatacctttacattcgtggagtcgaagtggcaagactaacggatgagcaagagagagcgcttcagctcctcacgtccttgcaagagctccaattcaagtctcatgacagtcttgtagatcttcctacagggctgcataatcttccttccctcaagaggttgaagatcgataattgcaagagcatcatgaggctgccagagaagggtctcccaccttcgttggaagaattgcatatcagcaattgcagcaaagagctagctgaccattgcagaatgctagaaagcaagctgatggtatcaactgattga
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| Protein seq | MKVLHKLFFGPSLSDDDHVDKLRHGDDEVTMKASSDGELVMIKANSDSELIEQCPVLKVFPLFQNSQQFKIERMSWLSSLTKLTINDCPHLHVHNPLPPSTIVSELFIAGVSTLPRVEGSSHGTLRIGRHPNDIFSFDSDDILELMILDDKSLSFHSLRSLTRLVIDGCKNLMSVLFESLRQLLRLKSLGIYNCPQLFSSNVPSELTSEDTTGANRNALPSLECLDIASCGINGKWLSLMLQHAEVLQKLSITSCWQIRGLSIGEEENGHPNLMSATEASSSGYPSRDELLHLPLNLIPSLKKVTIRFCSLRFYGNKEGFARFTFLEGIAISRCPELISSLVHNNRKDEQVNGRWLLPPSIVELEIQDDNYLQMLQPCFPGSLTHLKRLQVQGNPNLTSLQLHSCTELQELIIQSCRSLNSLQGLQSLCNLRLLRAYRCLGDLGGDERCLLPQSIEELDIDEYFQETLQPFFPRNLTCLKKLRVSGTTSFKSLELMSCTALEHLKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCLESLSGQGYELCPRLERLQIDDLSILTTSLCQHLISVQFLELYGDPYLYIRGVEVARLTDEQERALQLLTSLQELQFKSHDSLVDLPTGLHNLPSLKRLKIDNCKSIMRLPEKGLPPSLEELHISNCSKELADHCRMLESKLMVSTD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0027740 | OsKeNa_04g0027740.01 | Chr04 | 30213334 | 30216635 | + | NAM | ||
| CDS seq | atgaaggtccttcacaaactgttcttcggaccttcactgagtgatgatgatcatgttgacaagctccgacatggagatgatgaagtgacaatgaaggccagctccgacggggaactggtgatgattaaagccaactctgacagcgagttgattgaacagtgccctgttctgaaggtctttccactgtttcagaactcccagcaatttaaaatcgagcgaatgtcatggttgtctagtcttaccaagcttaccatcaatgattgtcctcatttgcatgtgcacaatcctcttccgccttcaactattgtttcggaattatttatcgctggagtttcaacacttccaagggtggaggggtcatcccacggaacattaagaattggacgtcatcctaatgatattttcagttttgattccgatgatattttagagctaatgatattggatgataaatctctatcattccatagcttgaggtccctaactagattggtaatagatggttgcaaaaaccttatgtctgttttatttgaaagtttaaggcaactcttgcgtttgaagagtttggggatatacaactgcccacaacttttctcttcaaatgtcccatcggagcttaccagtgaagacacgacaggtgcaaatcgcaacgccctcccttctctcgaatgtcttgatattgcttcttgtggaattaatgggaagtggctatctctgatgctgcaacatgcggaggtcctacagaaattgagtataacctcgtgttggcagataagagggctatcaataggagaggaagaaaatggtcatccaaatcttatgtcagctacagaggcttcgtcgtcaggatatccaagtcgagacgaacttttgcaccttccattaaatctcatcccatctctgaagaaggtaactattagattctgcagtttaagattttatggaaacaaggaaggtttcgctagatttaccttccttgagggcatagcaatttcgcgatgccctgagctgatctcgtccttggtgcataacaacagaaaggatgagcaggtgaacggaagatggctcctcccgccatcaattgtagaacttgagattcaagatgataattatctacaaatgttgcagccctgctttccagggagcctcacccacctgaaaagactacaagtacagggaaacccaaatttaacatctctgcagctgcattcctgcacagagctccaagagttgataattcaaagctgtaggtcacttaattctctacaaggcttgcaatcactctgcaacctcaggttgctgcgggcatacagatgcctcggcgatcttggaggagatgaaaggtgtctccttccgcaatcaattgaggaacttgatatcgacgagtattttcaagaaactctgcagccattctttccaaggaatctcacctgcctaaaaaaattacgagtatcaggcactacaagttttaaatctctagaactgatgtcatgcactgcactcgaacatttgaagattgaaggttgtgcatcgcttgctacattagtgggcttgcaatccctccacagcctcaggcatttggaagtatttagatgccctagcttgcctctatgtttggagagtttgtcagggcagggctatgagctatgccctcgattggaaaggctccagatcgatgacctctctatccttactacgtcgctctgccagcacctcatctcagtccaattcctagagctttacggagatccatacctttacattcgtggagtcgaagtggcaagactaacggatgagcaagagagagcgcttcagctcctcacgtccttgcaagagctccaattcaagtctcatgacagtcttgtagatcttcctacagggctgcataatcttccttccctcaagaggttgaagatcgataattgcaagagcatcatgaggctgccagagaagggtctcccaccttcgttggaagaattgcatatcagcaattgcagcaaagagctagctgaccattgcagaatgctagaaagcaagctgatggtatcaactgattga
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| Protein seq | MKVLHKLFFGPSLSDDDHVDKLRHGDDEVTMKASSDGELVMIKANSDSELIEQCPVLKVFPLFQNSQQFKIERMSWLSSLTKLTINDCPHLHVHNPLPPSTIVSELFIAGVSTLPRVEGSSHGTLRIGRHPNDIFSFDSDDILELMILDDKSLSFHSLRSLTRLVIDGCKNLMSVLFESLRQLLRLKSLGIYNCPQLFSSNVPSELTSEDTTGANRNALPSLECLDIASCGINGKWLSLMLQHAEVLQKLSITSCWQIRGLSIGEEENGHPNLMSATEASSSGYPSRDELLHLPLNLIPSLKKVTIRFCSLRFYGNKEGFARFTFLEGIAISRCPELISSLVHNNRKDEQVNGRWLLPPSIVELEIQDDNYLQMLQPCFPGSLTHLKRLQVQGNPNLTSLQLHSCTELQELIIQSCRSLNSLQGLQSLCNLRLLRAYRCLGDLGGDERCLLPQSIEELDIDEYFQETLQPFFPRNLTCLKKLRVSGTTSFKSLELMSCTALEHLKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCLESLSGQGYELCPRLERLQIDDLSILTTSLCQHLISVQFLELYGDPYLYIRGVEVARLTDEQERALQLLTSLQELQFKSHDSLVDLPTGLHNLPSLKRLKIDNCKSIMRLPEKGLPPSLEELHISNCSKELADHCRMLESKLMVSTD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.310050 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0623066 | SBH | 0.651313 | 0.0 | 2.022301 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53060 | RBH | 0.0 | 0.0 | 0.034372 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0623066 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027060 | RBH | 0.0 | 1.016113 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027790 | SBH | 0.000000 | 0.198818 | 0.117967 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027540 | RBH | 0.0 | 0.685567 | 0.152697 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027280 | SBH | 0.147217 | 0.112011 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0497900 | SBH | 1.4887885 | 6.9242855 | 1.8798015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026280 | RBH | 0.013867 | 0.113217 | 0.070892 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0503800 | RBH | 0.052426 | 0.147272 | 0.2755025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026690 | RBH | 0.0 | 0.086095 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026580 | RBH | 0.0 | 6.712756 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027060 | RBH | 0.000000 | 0.355311 | 0.177425 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026420 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026310 | RBH | 0.000000 | 0.000000 | 0.0 |
