Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_04g0024930		OGI:04087260 \| 16/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr04:28019228-28024739		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ctaaccaactgccgcctcaatccaacataggaactccccaaagagaaggggaggaactccaagaagagtgagggtgcagaccggcaacgaggaagacgacccaccgccgctagctccgttagcactgccatcactccctttacacccggcctcggggcatacgaactgccatgtacaccccaacgccaccaccgctgcaccaaatggccagactgcagcctccgggcggaccacctcaccgtcgccgtccgaccgcccatgccgcatcacgccgaccatgggccatgttctggccacgccctccgggagggccaccgccgccgtctgcccaggccacgccacgcttaccctaggccgtcgcccgaccgcagatggccgccgtgcgctgggccgcagcgccccaccggcgcctgcgccgtgccgcgacacatgcgccgcctccgagccccggccatcacgccgagcatggggcggccagatccggccatagggcgttggatctaccgtcctccgcccaggccatgccacgtcgccgccctgcgctggcccgcgacgccccacggcccaccgcgcgccgccgtcgagctctggccgttgcgccgcccgaactagacgtggggcaaccagatccagctacagaagcaccgaatccgccgccaccccgaggcgcctcgccgtcgtcgcctccaaccgtggtggtaggtgtcgttagctcaactctgccatccttgcgccaaggaaagggtcgccaaagtggaaggcctcgccgccgccttcctagctcaccgctgacgtcctccaatggcggcaaggtggagaaagaggagggggtgtggcggcgcgggcggctaaggtttcgccccccgagccgccctcacgagagcgacgcgggggtcctacaaccacttctgcggcatggagtgttgccagggaaggttttgcaccaagaagtcggttgctcttgccggtaattacacactccatgcgttccattgattggtcgcgtttgcccatcaatctccactagctgatccccattccacggataggttctttcgtctcgctcttcttcctcgcggcagccttccaaggacaccctataggactgggacatcgacccggcgtgcatccccaagatcctcgggggcgcgtgcaacgcgaggcagttcacgtacgagcagctggacgacaggacgaggtgaccaagaggttcgacagcgacaaggtcgtcaacgtcgtggacgtcacggtccacgccgttctcgacgacggcagtcacggcaccgtggtcgcggtgcagaggatcagctcctctccgaggtctcgcaccggaacatcgcccgcgccgtcggcttctgccccaactccagcaacccggtgcacgagcacttcgccggcggtacgctggagctgctgacggggctgaggcaccagcatccgttcgactcggttgcgcccaagctgagggaagggaggcttcatgaggtcatcgacccgacgctcctcaccgggaagcagctgccggcgccgaacgaggaggtgaggaagatgttcgagctcgccgtgatgtacatgctgagcgcccagaacgggctctgcatgctcggcgtcgccaaggagctgatgcagatcgtgaggaacaacatcgggagcagcagcaagattgagatatccctcgaagagacatttctcgagctcgagcctgctgcagatgatctccatgtcgcccaagacgctgcatcaccatcttccttgaagagagagctaactgcagagctgcaccaccatctcattcaccttgaatgaagaggatctatgatgcccgtgttaaggttcggagcaaatttcaccgtcccagtgaagcctgtgaaacattcaaactgtcaaaagcccgtctataattgctgcaagcctccgcaatacagaagagtatggagcgcaataagctccgatgtacttaccgggttactcttccatctttatgcttccctagatcttccctctcaaccttggtgaattgggtctgcgtcgcaaatatttctcggagaaggtagctgctgcaaactttacaaacaagaaggacagacacttgcagtattcatcagaaaggttaagggcataggacagtcatgcacaattatcagtagttcagtacacaggttatttgtctagaccagcttcagggaagctgtgccattgttaacccaaatttcaagcaaggtctacagggaacttagtgctgcaaaccgcgatggcatatgatagcctgcacacaaatccattggtgcatttctccatcaaaggatgaaaagagaccatgaacaattgcatgaacttaaatacaaaaatattgcacatttatggtttatcaccatgtgccttttctaaattagtatgcagaaaagcatagcactttcttagaagacaaatggcagaaaaaataaaagatggatgccatattctgataggttcactttcatcatcctaagaaaccattgagagccatcaaattcctgaatgcttcctagcgctgtgaactgaacaaagcacggctgacaataccagttgcctcaatgtaccgatcaacacaccgtgatatgcagctactctcacttccactcaagcttgttcctggtttagtgacacactttgcaaagcatttgtttccaacagtctgcaacatcaagaagaaaaatgtaagcatcccaaaatcaatacatacctaaatgtagttttctagacagttaatgtgaaataaggacgtatgtggtacatctggtcatgcaagtataatgctttctagtttcaacaatgacatgacaaacttatatctactccatgtctttttgctccagtgctacaacttttaccatttaaatttcatcccctgggtttcaccatggacaaacaaaccgatgagatatagtctacacacaactagaaactggaagattatgcactacaattaaattaagtcagtgtctccctgattgactagatagttggactgatacaagattcagagagttgctcatcacattcaaccccaaaaagggcaaggtaaagcatgctgagccaattggaacactgaatcaaatttggaaaataagtatatcatacagaatattcagtaaagcttatcaatgcagattgttaaacgtctcaattgatataatattatgtatttcagctatcagatgtaaacagcaacccttctgtatgtctacaagccattgctcactaggccgctaggctcctaaacaaaattggtgatagtcatactaaaaaaaactgacataaattcaacttggtattgaacaggaaaacttcaaaggtatacattagctgatcattgctagtattacaaactaaaattgtttctttcggtatctaattggaaacatatgaaaattgaagacgattttataactagactgaaagcatccagtttgaacatacataactgcataccgattagagacatctatcagaagaaaggcattcatgaatggaaagcagttttaagggtgattttcagtttgaagcagttttgaacaagggttcagcacttcagcatcagctgtacactagaatagtgcactataaacagtccaatatggaccacacatcccatgaatcagaaatgcaaaatcctaacacagatgtgttcatgtcccttgttttcatagcacaaatacacgcacacatgtcttgaggttagcaaaagaaaaaatccctttaaatagttctggtacaaaaagaaggaataaggtttgctgtcaagctcttaatgtatttatgtaaaatccttggttccatgaatcaacaaaatttaaaaacaataatactaaactaggaagtaggaattagttaagctagcaatcagtctaagtaacaatattctctttggtttgtatgacagttcggaatgctatatggcatccatctaatgaaaacaaaggtattcaatttggatttactaggaaacaaatgctatatttgatcactttgcagatgatattttcgcctttacagagataacaagccatgatgttcagtttgaagtgtgaaatgatagaagtaacagtctggtagcgctcttaaggagcatagttgaacctacagaagtacacagtataagtgtataactttaagaagaagataagaagggtgggatctactttcctacataatcaaaacagggccaatgcaccctgatgttcctgaagaactaagcatggttatgattgaggtaaggtaaattaaagaaactatatcaattaagaatttgcgttgaagagaagttaatggcaaattgaccattgtgaacaacggcaacaaagctctgtagaaacctgatcgtgaacaacggataaacaatgcacagagctgcaaaccaaaaggtttcaagaccacaagctaaattaacttaagcaaacacagtcagctgtgcttgatcttctccaaagtccaaacctaccgcaaaacagtggcattgtggcacgtttttttttttttgttccaattgaggcttaatcatacagattttacgcaacactagccaaaacaacatattcgcatggtactgatttggcaagcatattcaatcaaactagagctctcatagcatcgcccctagactcaaaccgacctccaaatgatcaaatggagcgattgcgactcggtagaacaatggtggaaccttgtggtagattctcccaacaacccccgcattcccctgcgtactctggtgatcttggtctcctgggaaatatggtgtgagcgaaatgcaagaatttttcgaaacactgcatcgccatcggcatccatcctcgccaagataaaagaggaaggtcgggcatgggtcaaaacaggagcctctaagcttcaagagttcggaatcttgggagataccacttaaccatcaccttttgcgggcttagttcttttttagactagccctgtacataattctatcgctctgtattttctccatctctatcaatatacgaggcaaagcttttgccctcctttcaaaaaaaaaaaaacatagcatcgcccctaattagacgcgagatttggggattcaaaccggtgccaagctaaaaggataaatcaattggtttcaccttaagagctccaatttgaaatccagcacagaagagaatcctctacagatgcgcacacccacaaactgataataccgtcgatccgaggaaggctccagtaatctcacctcgaggaactcctgcgcgtaggcctgcgcgagctgggccttgatctgttccatgagatgctccgtggacgcagtcgaccccgccgacgacggcgacgagaacgagtccatgatctccggcgagcggcggctccctccaactcttccgcggcaaagctgcgcgctggtcggcttcttcttcctcagcaagacatggagagagttatacgacggcgcggtgggcggtgggcggtggctagtggccacggcgtcttgtgggcttgtggcgtgggccat More
CDS seq		atggactcgttctcgtcgccgtcgtcggcggggtcgactgcgtccacggagcatctcatggaacagatcaaggcccagctcgcgcaggcctacgcgcaggagttcctcgagactgttggaaacaaatgctttgcaaagtgtgtcactaaaccaggaacaagcttgagtggaagtgagagtagctgcatatcacgcagctaccttctccgagaaatatttgcgacgcagacccaattcaccaaggttgagagggaagatctagggaagcataaagatggaagagtaacccgcgtcttgggcgacatggagatcatctgcagcaggctcgagctcgagaaatgtctcttcgagggatatctcaatcttgctgctgctcccgatgttgttcctcacgatctgcatcagctccttggcgacgccgagcatgcagagcccgttctgggcgctcagcatgtacatcacggcgagctcgaacatcttcctcacctcctcgttcggcgccggcagctgcttcccggtgaggagcgtcgggtcgatgacctcatgaagcctcccttccctcagcttgggcgcaaccgagtcgaacggatgctggtgcctcagccccgtcagcagctccagcgtaccgccggcgaagtgctcgtgcaccgggttgctggagttggggcagaagccgacggcgcgggcgatgttccgctggatctggttgccccacgtctagttcgggcggcgcaacggccagagctcgacggcggcgcgcggtgggccgtggggcgtcgcgggccagcgcagggcggcgacgtggcatggcctgggcggaggacggtagatccaacgccctatggccggatctggccgccccatgctcggcgtgatggccggggctcggaggcggcgcatgtgtcgcggcacggcgcaggcgccggtggggcgctgcggcccagcgcacggcggccatctgcggtcgggcgacggcctagggtaagcgtggcgtggcctgggcagacggcggcggtggccctcccggagggcgtggccagaacatggcccatggtcggcgtgatgcggcatgggcggtcggacggcgacggtgaggtggtccgcccggaggctgcagtctggccatttggtgcagcggtggtggcgttggggtgtacatggcagttcgtatgccccgaggccgggtgtaaagggagtgatggcagtgctaacggagctagcggcggtgggtcgtcttcctcgttgccggtctgcaccctcactcttcttggagttcctccccttctctttggggagttcctatgttggattgaggcggcagttggttag More
Protein seq		MDSFSSPSSAGSTASTEHLMEQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGTSLSGSESSCISRSYLLREIFATQTQFTKVEREDLGKHKDGRVTRVLGDMEIICSRLELEKCLFEGYLNLAAAPDVVPHDLHQLLGDAEHAEPVLGAQHVHHGELEHLPHLLVRRRQLLPGEERRVDDLMKPPFPQLGRNRVERMLVPQPRQQLQRTAGEVLVHRVAGVGAEADGAGDVPLDLVAPRLVRAAQRPELDGGARWAVGRRGPAQGGDVAWPGRRTVDPTPYGRIWPPHARRDGRGSEAAHVSRHGAGAGGALRPSARRPSAVGRRPRVSVAWPGQTAAVALPEGVARTWPMVGVMRHGRSDGDGEVVRPEAAVWPFGAAVVALGCTWQFVCPEAGCKGSDGSANGASGGGSSSSLPVCTLTLLGVPPLLFGEFLCWIEAAVG
Function		Mitochondrial import inner membrane translocase subunit Tim13 [UniProtKB/Swiss-Prot:Q9XGY5]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_04g0024930	OsKeNa_04g0024930.01	Chr04	28019228	28024739	-	NAM
CDS seq	atggactcgttctcgtcgccgtcgtcggcggggtcgactgcgtccacggagcatctcatggaacagatcaaggcccagctcgcgcaggcctacgcgcaggagttcctcgagactgttggaaacaaatgctttgcaaagtgtgtcactaaaccaggaacaagcttgagtggaagtgagagtagctgcatatcacgcagctaccttctccgagaaatatttgcgacgcagacccaattcaccaaggttgagagggaagatctagggaagcataaagatggaagagtaacccgcgtcttgggcgacatggagatcatctgcagcaggctcgagctcgagaaatgtctcttcgagggatatctcaatcttgctgctgctcccgatgttgttcctcacgatctgcatcagctccttggcgacgccgagcatgcagagcccgttctgggcgctcagcatgtacatcacggcgagctcgaacatcttcctcacctcctcgttcggcgccggcagctgcttcccggtgaggagcgtcgggtcgatgacctcatgaagcctcccttccctcagcttgggcgcaaccgagtcgaacggatgctggtgcctcagccccgtcagcagctccagcgtaccgccggcgaagtgctcgtgcaccgggttgctggagttggggcagaagccgacggcgcgggcgatgttccgctggatctggttgccccacgtctagttcgggcggcgcaacggccagagctcgacggcggcgcgcggtgggccgtggggcgtcgcgggccagcgcagggcggcgacgtggcatggcctgggcggaggacggtagatccaacgccctatggccggatctggccgccccatgctcggcgtgatggccggggctcggaggcggcgcatgtgtcgcggcacggcgcaggcgccggtggggcgctgcggcccagcgcacggcggccatctgcggtcgggcgacggcctagggtaagcgtggcgtggcctgggcagacggcggcggtggccctcccggagggcgtggccagaacatggcccatggtcggcgtgatgcggcatgggcggtcggacggcgacggtgaggtggtccgcccggaggctgcagtctggccatttggtgcagcggtggtggcgttggggtgtacatggcagttcgtatgccccgaggccgggtgtaaagggagtgatggcagtgctaacggagctagcggcggtgggtcgtcttcctcgttgccggtctgcaccctcactcttcttggagttcctccccttctctttggggagttcctatgttggattgaggcggcagttggttag More
Protein seq	MDSFSSPSSAGSTASTEHLMEQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGTSLSGSESSCISRSYLLREIFATQTQFTKVEREDLGKHKDGRVTRVLGDMEIICSRLELEKCLFEGYLNLAAAPDVVPHDLHQLLGDAEHAEPVLGAQHVHHGELEHLPHLLVRRRQLLPGEERRVDDLMKPPFPQLGRNRVERMLVPQPRQQLQRTAGEVLVHRVAGVGAEADGAGDVPLDLVAPRLVRAAQRPELDGGARWAVGRRGPAQGGDVAWPGRRTVDPTPYGRIWPPHARRDGRGSEAAHVSRHGAGAGGALRPSARRPSAVGRRPRVSVAWPGQTAAVALPEGVARTWPMVGVMRHGRSDGDGEVVRPEAAVWPFGAAVVALGCTWQFVCPEAGCKGSDGSANGASGGGSSSSLPVCTLTLLGVPPLLFGEFLCWIEAAVG More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_04g0024930	OsKeNa_04g0024930.02	Chr04	28021547	28021900	-	IsoSeq
CDS seq	atggcatccatcttttattttttctgccatttgtcttctaagaaagtgctatgcttttctgca
Protein seq	MASIFYFFCHLSSKKVLCFSA

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.193386	3.938447	3.202563

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_04g0581300	RBH	1.946814	0.000000	6.975862
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g49220	RBH	0.109941	0.047762	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os04g0581300	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0024190	RBH	0.0	1.474277	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0029240	RBH	0.788229	2.757452	0.545369
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0024630	RBH	0.0	2.504734	0.765128
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0024410	RBH	0.047733	0.221793	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0024560	RBH	0.0	0.000000	0.237496
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0463900	RBH	0.3325	0.5602835	0.463033
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0023370	RBH	0.0	0.301500	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0466800	RBH	0.4527585	0.2925915	2.080861
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_04g0023830	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_04g0023670	RBH	0.110250	3.682585	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_04g0023800	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0024190	RBH	0.063830	0.000000	0.247728
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_04g0024400	RBH	0.000000	5.107435	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G023620	RBH	0.363761	5.524159	0.614099
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0023560	RBH	0.000000	1.915855	0.476311

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.