Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0581300 | OGI:04087260 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:29350946-29354190 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCTAGACCAGCTTCAGGGAAGCTGTGCCATTGTTAACCCAAATTTCAAGCAAGGTCTACAGGGAACTTAGTGCTGCAAACCGCGATGGCATATGATAGCCTGCACACAAATCCATTGGTGCATTTCTCCATCAAAGGATGAAAAGAGACCATGAACAATTGCATGAACTTAAATACAAAAATATTGCACATTTATGGTTTATCACCATGTGCCTTTTCTAAATTAGTATGCAGAAAAGCATAGCACTTTCTTAGAAGACAAATGGCAGAAAAAATAAAAGATGGATGCCATATTCTGATAGGTTCACTTTCATCATCCTAAGAAACCATTGAGAGCCATCAAATTCCTGAATGCTTCCTAGCGCTGTGAACTGAACAAAGCACGGCTGACAATACCAGTTGCCTCAATGTACCGATCAACACACCGTGATATGCAGCTACTCTCACTTCCACTCAAGCTTGTTCCTGGTTTAGTGACACACTTTGCAAAGCATTTGTTTCCAACAGTCTGCAACATCAAGAAGAAAAATGTAAGCATCCCAAAATCAATACATACCTAAATGTAGTTTTCTAGACAGTTAATGTGAAATAAGGACGTATGTGGTACATCTGGTCATGCAAGTATAATGCTTTCTAGTTTCAACAATGACATGACAAACTTATATCTACTCCATGTCTTTTTGCTCCAGTGCTACAACTTTTACCATTTAAATTTCATCCCCTGGGTTTCACCATGGACAAACAAACCGATGAGATATAGTCTACACACAACTAGAAACTGGAAGATTATGCACTACAATTAAATTAAGTCAGTGTCTCCCTGATTGACTAGATAGTTGGACTGATACAAGATTCAGAGAGTTGCTCATCACATTCAACCCCAAAAAGGGCAAGGTAAAGCATGCTGAGCCAATTGGAACACTGAATCAAATTTGGAAAATAAGTATATCATACAGAATATTCAGTAAAGCTTATCAATGCAGATTGTTAAACGTCTCAATTGATATAATATTATGTATTTCAGCTATCAGATGTAAACAGCAACCCTTCTGTATGTCTACAAGCCATTGCTCACTAGGCCGCTAGGCTCCTAAACAAAATTGGTGATAGTCATACTAAAAAAAACTGACATAAATTCAACTTGGTATTGAACAGGAAAACTTCAAAGGTATACATTAGCTGATCATTGCTAGTATTACAAACTAAAATTGTTTCTTTCGGTATCTAATTGGAAACATATGAAAATTGAAGACGATTTTATAACTAGACTGAAAGCATCCAGTTTGAACATACATAACTGCATACCGATTAGAGACATCTATCAGAAGAAAGGCATTCATGAATGGAAAGCAGTTTTAAGGGTGATTTTCAGTTTGAAGCAGTTTTGAACAAGGGTTCAGCACTTCAGCATCAGCTGTACACTAGAATAGTGCACTATAAACAGTCCAATATGGACCACACATCCCATGAATCAGAAATGCAAAATCCTAACACAGATGTGTTCATGTCCCTTGTTTTCATAGCACAAATACACGCACACATGTCTTGAGGTTAGCAAAAGAAAAAATCCCTTTAAATAGTTCTGGTACAAAAAGAAGGAATAAGGTTTGCTGTCAAGCTCTTAATGTATTTATGTAAAATCCTTGGTTCCATGAATCAACAAAATTTAAAAACAATAATACTAAACTAGGAAGTAGGAATTAGTTAAGCTAGCAATCAGTCTAAGTAACAATATTCTCTTTGGTTTGTATGACAGTTCGGAATGCTATATGGCATCCATCTAATGAAAACAAAGGTATTCAATTTGGATTTACTAGGAAACAAATGCTATATTTGATCACTTTGCAGATGATATTTTCGCCTTTACAGAGATAACAAGCCATGATGTTCAGTTTGAAGTGTGAAATGATAGAAGTAACAGTCTGGTAGCGCTCTTAAGGAGCATAGTTGAACCTACAGAAGTACACAGTATAAGTGTATAACTTTAAGAAGAAGATAAGAAGGGTGGGATCTACTTTCCTACATAATCAAAACAGGGCCAATGCACCCTGATGTTCCTGAAGAACTAAGCATGGTTATGATTGAGGTAAGGTAAATTAAGGAAACTATATCAATTAAGAATTTGCGTTGAAGAGAAGTTAATGGCAAATTGACCATTGTGAACAACGGCAACAAAGCTCTGTAGAAACCTGATCGTGAACAACGGATAAACAATGCACAGAGCTGCAAACCAAAAGGTTTCAAGACCACAAGCTAAATTAACTTAAGCAAACACAGTCAGCTGTGCTTGATCTTCTCCAAAGTCCAAACCTACCGCAAAACAGTGGCATTGTGGCACGTTTTTTTTTTGTTCCAATTGAGGCTTAATCATACAGATTTTACGCAACACTAGCCAAAACAACATATTCGCATGGTACTGATTTGGCAAGCATATTCAATCAAACTAGAGCTCTCATAGCATCGCCCCTAGACTCAAACCGACCTCCAAATGATCAAATGGAGCGATTGCGACTCGGTAGAACAATGGTGGAACCTTGTGGTAGATTCTCCCAACAACCCCCGCATTCCCCTGCGTACTCTGGTGATCTTGGTCTCCTGGGAAATATGGTGTGAGCGAAATGCAAGAATTTTTCGAAACACTGCATCGCCACCGGCATCCATCCTCGCCAAGATAAAAGAGGAAGGTCGGGCATGGGTCAAAGCAGGAGCCTCTAAGCTTCAAGAGTTCGGAATCTTGGGAGATACCACTTAACCATCACCTTTTGCGGGCTTAGTTCTTTTTTAGACTAGCCCTGTACATAATTCTATCGCTCTGTATTTTCTCCATCTCTATCAATATACGAGGCAAAGCTTTTGCCCTCCTTTCAAAAAAAAAAAAACATAGCATCGCCCCTAATTAGACGCGAGATTTGGGGATTCAAACCGGTGCCAAGCTAAAAGGATAAATCAATTGGTTTCACCTTAAGAGCTCCAATTTGAAATCCAGCACAGAAGAGAATCCTCTACAGATGCGCACACCCACAAACTGATAATACCGTCGATCCGAGGAAGGCTCCAGTAATCTCACCTCGAGGAACTCCTGCGCGTAGGCCTGCGCGAGCTGGGCCTTGATCTGTTCCATGAGATGCTCCGTGGACGCAGTCGACCCCGCCGACGACGGCGACGAGAACGAGTCCATGATCTCCGGCGAGCGGCGGCTCCCTCCAACTCTTCCGCGGCAAAGCTGCGCGCTGGTCGGCTTCTTC
More
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| CDS seq | ATGGACTCGTTCTCGTCGCCGTCGTCGGCGGGGTCGACTGCGTCCACGGAGCATCTCATGGAACAGATCAAGGCCCAGCTCGCGCAGGCCTACGCGCAGGAGTTCCTCGAGACTGTTGGAAACAAATGCTTTGCAAAGTGTGTCACTAAACCAGGAACAAGCTTGAGTGGAAGTGAGAGTAGCTGCATATCACGGTGTGTTGATCGGTACATTGAGGCAACTGGTATTGTCAGCCGTGCTTTGTTCAGTTCACAGCGCTAG |
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| Protein seq | MDSFSSPSSAGSTASTEHLMEQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGTSLSGSESSCISRCVDRYIEATGIVSRALFSSQR |
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| Function | Mitochondrial import inner membrane translocase subunit Tim13 [UniProtKB/Swiss-Prot:Q9XGY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0581300 | Os04t0581300-01 | Chr04 | 29350946 | 29354190 | - | irgsp1_rep | ||
| CDS seq | ATGGACTCGTTCTCGTCGCCGTCGTCGGCGGGGTCGACTGCGTCCACGGAGCATCTCATGGAACAGATCAAGGCCCAGCTCGCGCAGGCCTACGCGCAGGAGTTCCTCGAGACTGTTGGAAACAAATGCTTTGCAAAGTGTGTCACTAAACCAGGAACAAGCTTGAGTGGAAGTGAGAGTAGCTGCATATCACGGTGTGTTGATCGGTACATTGAGGCAACTGGTATTGTCAGCCGTGCTTTGTTCAGTTCACAGCGCTAG
More
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| Protein seq | MDSFSSPSSAGSTASTEHLMEQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGTSLSGSESSCISRCVDRYIEATGIVSRALFSSQR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0581300 | RBH | 1.946814 | 0.000000 | 6.975862 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49220 | RBH | 0.109941 | 0.047762 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0682600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024190 | RBH | 0.0 | 1.474277 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024930 | RBH | 0.193386 | 3.938447 | 3.202563 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024630 | RBH | 0.0 | 2.504734 | 0.765128 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024410 | RBH | 0.047733 | 0.221793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024560 | RBH | 0.0 | 0.000000 | 0.237496 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0453400 | SBH | 33.0697705 | 34.0145665 | 72.278469 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023370 | RBH | 0.0 | 0.301500 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0481200 | SBH | 30.1815795 | 19.9219985 | 133.9360735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023670 | RBH | 0.110250 | 3.682585 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024190 | RBH | 0.063830 | 0.000000 | 0.247728 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024400 | RBH | 0.000000 | 5.107435 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023620 | RBH | 0.363761 | 5.524159 | 0.614099 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023560 | RBH | 0.000000 | 1.915855 | 0.476311 |
