Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0016960 | OGI:04070730 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:21832350-21836858 | ||||||||
| Gene Symbol | NRT1.3B, OsNRT1.3B | ||||||||||
| DNA seq | agagtctataattgcaagacttcggtaatttcagcattacacgttgctgaataattttgaggatgctccaaggagaaagaaaagaaaacattagagagtcaaaacacaaattaacccggcataagctctccagccatccaggtacacagcagtagcatacttcgagttcgagctagaagtccatccctttcactgtcgtcgcggcctccctgaccgcgccctcgtcgtccggcggcgagtccgccgcgggcagtatcgccggcctgtactggtgccggctcgcgaacaccaggaacgccgcgaagttggccaccccgagcgcggcgagcatccagtagaacaggtccagcctcccgtcgtccaggccgtcccggatccacgcgccccgcgtggcggcgtcgacggcggacacgaggaggctgctcaggaagaaccccatggcgagcgtggcgaggaacaggcccgtgctcatggacttcatccgctcgggggcctccctgatgaagaactccagctgccccacgtacgcgaacgcctcgccggcgcccaccaggaagaactgcggcaccagccagaacgcgctgatcatcgcgacgcctcctccgccggctccgccggacgcgtcgcggcgcttcttctcgacgagcgccgagacggccatggcgagcgtggcgaggacgagccccgcgccgacgcgctgcagggaggtcagcccctgcgggcggcgtgtgatcatcaggcggcgcgcgagcgggacgaggagccgctcgctggcggaggtgaagaggaggatggacaggaagaggaagacggagaaggagcccgccggcacggcgaagccgccggcgcggcggtccatgtgcgacgcctgctcgacggagaaggtggtcatctgggagtagaccgtccagaagaggatgctcgtggaccagatggggagcagcttcaccaccatcttcgcctcctccacctccgtcaccgtcagcgccgccactggctgctccggtggcgtcgccgccgccaggtcggcctccacgattgcggctttgtccagacacctacgctcagacgaaaatacaaagaaacagagaatgctaaagatctcggggccattcaaaataaattattcgccggattattattgttacggattatctgttttattataaaagttaaatatatttttcaaatataatataaatgcaggtgctcaaaacgtgcatatactcacccttataaacacacgcacgtataccttatgcttggagtacatttaaaagattaggcaaacaattgatgaagtcactgccgattgtctcgattattttaaaataaacttagaaaataatgacttacatgcaagtgttcctagcaatgcaatagattttgttttcgaaaagatattttaagacatatggagcaaataatccacattaataatactatgataaaatagaaagggcagatcacgatccaccagccatattacaacacgtgctaagatgcaaactttgttatcactatatgtgatatgtcaagtttgattcatgcatgatggacaactttggattcatagtatgctaacgctggtcgttcgcaacgcagtttgatgaagtttactacaatttgcaaggcatggacggttctgctttgagctctctctaccattcctcgtcagttttcagtgttctgcaaaaaaaaattgtagtgctccccaaaatgttcagaagcatttgctacaaaatctttagtgacgggtcgtttgcatggaggtgatgatttgcagatttagcatgccggtttagatccttcggctcccaactatgagtgtttagtgtggcaagcaacacttaatactgcatgagatttgttttctcaataacagggcaaacatataaccttggatttcattatagatcaattatatgagcttattttgtgggcatctaaaatcagttactaccaaacagtagcttcctagtagtaatacgtacgcaaacaacacaacctaatgcagagcgctgtagctccctctgcattctctcctccactgcagaggattcaaattgcccgcacacaatttggatcctctgcagtggaggagagaatgcagagggagctacagcgctctgcattaggttgtgttgtttgctgttggatctacatccaaccgtctaaaacaaattcctacagtagatccaaacagtaaataggaacagagtaaaaaggttactgttcacagagtacttgctacagtaatagaacaatgtttgcagcattgattcactgtagcagacacagaatactgtagctacagtcctctgctatactgtagaggacctgtatccggtgtggtggccttgctaggattaattggctttggattacacgtacaactgccaatttatcaatctctgcttacttaagcaatgatctaccgatatataggagcatatgcgaaatcctagcatcggatcagatagggttctcttccgtgtatttttggtatcaaactctgtcggtttcattcgtttccttttcctaattatcatggttctacgtgctgtacaggcaagaaatctaccaaaatttgtcgtctccagtttctcttgttcgtttcaagcgtttcagatgtcatagtcactcgcaacacagaaaacacttctactaatatacgcctttactgaatagctgcttgtatcgaactctttatctacttttcttttttgaagccaactcttcgtctacgtttcatccgctggaatcatataaatcatgactatactgtatcacctaaaaaagtaaaaaatgtgcatgtctatcagtctatgtcaaaatagcaagtttttttcagacgaacacttcaaatatttaatttcgaaaatcggagaattttatagcgtggtttgaattttggtcattctgttatatatctagcatatgagtatatgacacattgacatgacacggtacagagcttgacaactagtaacttagggttgtttagattgtagccaaaataaatcttaccaaattaattttggtaataccaaaattttaacaagttggtaatattactaattttttcaggatttatgatgtatttaccaaattttaacaacaaactaaatgtagatattttttataactttgcaaaaaagaaaagatatgattgaaaatgatatcaatgtgaacagttaagtgtgttgacctgagcctgttagtgtgtggcaccttagccttgtggaagccgtggagctcgccggcgtccgccgggaacggcatcctccgtttgcgccacgccgcccacagcacgcggccgatcgccgtgagggggctcccctggggcctccggtaccggtacctcggcgtgccggcggcgaacaccgccaccgcggcgaccatggcggcggccgacgcgccgtagccccagccgcggccgacgtcctcctgcacgtacaccagcgcggtgaccgcgagcaccgagccgaggctgatgcagaagtagaagcggttgaagaagaagagcatggccttcccctcccggcggtcgcgcccgtcgaactggtccgacccgaacccggacacgttcgccttcagCccccccgcccccgccgccgccgtgtacagcgccgcgtacagcatcgccatctgcccgccgctcgccgccacgcacccaccactctccgccgccgccgccgccgccaccgcgtcgccgcacggcggcggccgcattcccggcactaccgtgctcgctgccagcaggctcacaccctgcgcgtgtagacgtcagacaagggagatcatgctgtgttgtgtgctgcgcagctgcggtacgtacgatggcggcgatggtggcggagacggcgacggtgaggtagcggccgagcacggcgtcggcgaggaagccgccgaggagggcgaggaggttgagcgtgcccaggaagttggtgacgatgttggccgacctggcgttggagaggtgcaggtcgccgacgaggtacgtcaccaggttcatcgagatgcccaccacgcacacgcgctccgccaattccgtcccttatcacgacAaaaaaaaaaaaaaactcgatcatcacaaccatgaacaaaaaaccgtcgtcgcagtcgcacgctctcgcAaaaaaaaaaaaaacaaaaactaacagAaaaaaaaaagtacacccaacaggccggcgtgaccaagcacaagtgcacaacgtacacacacacatgccatacctaggatgagaccggctccgagccatcctccggtccggtccttgtccaccgggtttcccctgaaatccaccaccacgccgtcgtcgccgccatgaacgccggcagaaacctacagcgtgtacacgcatacagttaaagaaagatccaataagcatcgacttactctactaagcgtattacatcacgcatcagcgtcttaatcgagttccctactacgacgcaccatgttgcgcacgggagggcgaggagcagcaactttgcgaggttggc
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| CDS seq | atggtttctgccggcgttcatggcggcgacgacggcgtggtggtggatttcaggggaaacccggtggacaaggaccggaccggaggatggctcggagccggtctcatcctagggacggaattggcggagcgcgtgtgcgtggtgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaggtcggccaacatcgtcaccaacttcctgggcacgctcaacctcctcgccctcctcggcggcttcctcgccgacgccgtgctcggccgctacctcaccgtcgccgtctccgccaccatcgccgccatcggtgtgagcctgctggcagcgagcacggtagtgccgggaatgcggccgccgccgtgcggcgacgcggtggcggcggcggcggcggcggagagtggtgggtgcgtggcggcgagcggcgggcagatggcgatgctgtacgcggcgctgtacacggcggcggcgggggcggggggGctgaaggcgaacgtgtccgggttcgggtcggaccagttcgacgggcgcgaccgccgggaggggaaggccatgctcttcttcttcaaccgcttctacttctgcatcagcctcggctcggtgctcgcggtcaccgcgctggtgtacgtgcaggaggacgtcggccgcggctggggctacggcgcgtcggccgccgccatggtcgccgcggtggcggtgttcgccgccggcacgccgaggtaccggtaccggaggccccaggggagccccctcacggcgatcggccgcgtgctgtgggcggcgtggcgcaaacggaggatgccgtgtctggacaaagccgcaatcgtggaggccgacctggcggcggcgacgccaccggagcagccagtggcggcgctgacggtgacggaggtggaggaggcgaagatggtggtgaagctgctccccatctggtccacgagcatcctcttctggacggtctactcccagatgaccaccttctccgtcgagcaggcgtcgcacatggaccgccgcgccggcggcttcgccgtgccggcgggctccttctccgtcttcctcttcctgtccatcctcctcttcacctccgccagcgagcggctcctcgtcccgctcgcgcgccgcctgatgatcacacgccgcccgcaggggctgacctccctgcagcgcgtcggcgcggggctcgtcctcgccacgctcgccatggccgtctcggcgctcgctggacctgttctactggatgctcgccgcgctcggggtggccaacttcgcggcgttcctggtgttcgcgagccggcaccagtacaggccggcgatactgcccgcggcggactcgccgccggacgacgagggcgcggtcagggaggccgcgacgacagtgaaagggatggacttctagctcgaactcgaagtatgctactgctgtgtacctggatggctggagagcttatgccgggttaa
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| Protein seq | MVSAGVHGGDDGVVVDFRGNPVDKDRTGGWLGAGLILGTELAERVCVVGISMNLVTYLVGDLHLSNARSANIVTNFLGTLNLLALLGGFLADAVLGRYLTVAVSATIAAIGVSLLAASTVVPGMRPPPCGDAVAAAAAAESGGCVAASGGQMAMLYAALYTAAAGAGGLKANVSGFGSDQFDGRDRREGKAMLFFFNRFYFCISLGSVLAVTALVYVQEDVGRGWGYGASAAAMVAAVAVFAAGTPRYRYRRPQGSPLTAIGRVLWAAWRKRRMPCLDKAAIVEADLAAATPPEQPVAALTVTEVEEAKMVVKLLPIWSTSILFWTVYSQMTTFSVEQASHMDRRAGGFAVPAGSFSVFLFLSILLFTSASERLLVPLARRLMITRRPQGLTSLQRVGAGLVLATLAMAVSALAGPVLLDARRARGGQLRGVPGVREPAPVQAGDTARGGLAAGRRGRGQGGRDDSERDGLLARTRSMLLLCTWMAGELMPG |
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| Function | Protein NRT1/ PTR FAMILY 6.4 [UniProtKB/Swiss-Prot:Q9LVE0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0016960 | OsKeNa_04g0016960.01 | Chr04 | 21832460 | 21836858 | - | NAM | ||
| CDS seq | atggtttctgccggcgttcatggcggcgacgacggcgtggtggtggatttcaggggaaacccggtggacaaggaccggaccggaggatggctcggagccggtctcatcctagggacggaattggcggagcgcgtgtgcgtggtgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaggtcggccaacatcgtcaccaacttcctgggcacgctcaacctcctcgccctcctcggcggcttcctcgccgacgccgtgctcggccgctacctcaccgtcgccgtctccgccaccatcgccgccatcggtgtgagcctgctggcagcgagcacggtagtgccgggaatgcggccgccgccgtgcggcgacgcggtggcggcggcggcggcggcggagagtggtgggtgcgtggcggcgagcggcgggcagatggcgatgctgtacgcggcgctgtacacggcggcggcgggggcggggggGctgaaggcgaacgtgtccgggttcgggtcggaccagttcgacgggcgcgaccgccgggaggggaaggccatgctcttcttcttcaaccgcttctacttctgcatcagcctcggctcggtgctcgcggtcaccgcgctggtgtacgtgcaggaggacgtcggccgcggctggggctacggcgcgtcggccgccgccatggtcgccgcggtggcggtgttcgccgccggcacgccgaggtaccggtaccggaggccccaggggagccccctcacggcgatcggccgcgtgctgtgggcggcgtggcgcaaacggaggatgccgtgtctggacaaagccgcaatcgtggaggccgacctggcggcggcgacgccaccggagcagccagtggcggcgctgacggtgacggaggtggaggaggcgaagatggtggtgaagctgctccccatctggtccacgagcatcctcttctggacggtctactcccagatgaccaccttctccgtcgagcaggcgtcgcacatggaccgccgcgccggcggcttcgccgtgccggcgggctccttctccgtcttcctcttcctgtccatcctcctcttcacctccgccagcgagcggctcctcgtcccgctcgcgcgccgcctgatgatcacacgccgcccgcaggggctgacctccctgcagcgcgtcggcgcggggctcgtcctcgccacgctcgccatggccgtctcggcgctcgctggacctgttctactggatgctcgccgcgctcggggtggccaacttcgcggcgttcctggtgttcgcgagccggcaccagtacaggccggcgatactgcccgcggcggactcgccgccggacgacgagggcgcggtcagggaggccgcgacgacagtgaaagggatggacttctagctcgaactcgaagtatgctactgctgtgtacctggatggctggagagcttatgccgggttaa
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| Protein seq | MVSAGVHGGDDGVVVDFRGNPVDKDRTGGWLGAGLILGTELAERVCVVGISMNLVTYLVGDLHLSNARSANIVTNFLGTLNLLALLGGFLADAVLGRYLTVAVSATIAAIGVSLLAASTVVPGMRPPPCGDAVAAAAAAESGGCVAASGGQMAMLYAALYTAAAGAGGLKANVSGFGSDQFDGRDRREGKAMLFFFNRFYFCISLGSVLAVTALVYVQEDVGRGWGYGASAAAMVAAVAVFAAGTPRYRYRRPQGSPLTAIGRVLWAAWRKRRMPCLDKAAIVEADLAAATPPEQPVAALTVTEVEEAKMVVKLLPIWSTSILFWTVYSQMTTFSVEQASHMDRRAGGFAVPAGSFSVFLFLSILLFTSASERLLVPLARRLMITRRPQGLTSLQRVGAGLVLATLAMAVSALAGPVLLDARRARGGQLRGVPGVREPAPVQAGDTARGGLAAGRRGRGQGGRDDSERDGLLARTRSMLLLCTWMAGELMPG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0016960 | OsKeNa_04g0016960.02 | Chr04 | 21832350 | 21836858 | - | IsoSeq | ||
| CDS seq | ccaacctcgcaaagttgctgctcctcgccctcccgtgcgcaacatggtttctgccggcgttcatggcggcgacgacggcgtggtggtggatttcaggggaaacccggtggacaaggaccggaccggaggatggctcggagccggtctcatcctagggacggaattggcggagcgcgtgtgcgtggtgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaggtcggccaacatcgtcaccaacttcctgggcacgctcaacctcctcgccctcctcggcggcttcctcgccgacgccgtgctcggccgctacctcaccgtcgccgtctccgccaccatcgccgccatcggtgtgagcctgctggcagcgagcacggtagtgccgggaatgcggccgccgccgtgcggcgacgcggtggcggcggcggcggcggcggagagtggtgggtgcgtggcggcgagcggcgggcagatggcgatgctgtacgcggcgctgtacacggcggcggcgggggcggggggGctgaaggcgaacgtgtccgggttcgggtcggaccagttcgacgggcgcgaccgccgggaggggaaggccatgctcttcttcttcaaccgcttctacttctgcatcagcctcggctcggtgctcgcggtcaccgcgctggtgtacgtgcaggaggacgtcggccgcggctggggctacggcgcgtcggccgccgccatggtcgccgcggtggcggtgttcgccgccggcacgccgaggtaccggtaccggaggccccaggggagccccctcacggcgatcggccgcgtgctgtgggcggcgtggcgcaaacggaggatgccgttcccggcggacgccggcgagctccacggcttccacaa
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| Protein seq | PTSQSCCSSPSRAQHGFCRRSWRRRRRGGGFQGKPGGQGPDRRMARSRSHPRDGIGGARVRGGHLDEPGDVPRRRPAPLQRQVGQHRHQLPGHAQPPRPPRRLPRRRRARPLPHRRRLRHHRRHRCEPAGSEHGSAGNAAAAVRRRGGGGGGGGEWWVRGGERRADGDAVRGAVHGGGGGGGAEGERVRVRVGPVRRARPPGGEGHALLLQPLLLLHQPRLGARGHRAGVRAGGRRPRLGLRRVGRRHGRRGGGVRRRHAEVPVPEAPGEPPHGDRPRAVGGVAQTEDAVPGGRRRAPRLPQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 21833407 | 21835630 | - | OsKeNa_04g0016960.02 | OsKeNa_04g0016960.02,OsKeNa_04g0016960.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.479761 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0464400 | RBH | 0.0 | 0.0 | 0.278870 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39030 | RBH | 0.0 | 0.0 | 0.075194 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0464400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016220 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022650 | RBH | 0.711273 | 2.032275 | 2.361794 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016690 | RBH | 0.0 | 0.0 | 0.640865 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016640 | RBH | 0.0 | 0.0 | 0.570800 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0361800 | RBH | 0.071812 | 0.2895375 | 0.133947 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015440 | RBH | 0.0 | 0.0 | 0.237810 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0360100 | RBH | 0 | 0.075306 | 3.2062285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015860 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016380 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015740 | RBH | 0.0 | 0.0 | 0.000000 |
