Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0016010 | OGI:04068590 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:21146850-21148202 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggacgcgcgagctcctcgtcgttcttgccgtcgtcgtcatggccgccgtcggcgccggcgcgcagtcttcttcggcgtcgccggcgccggcgacgtcgcaggcaccgacggtgcggcagcagacgccgttcgggcggaccatgtcgaccgtcatcacggtgtccatcagcgtgttcttcttcctgctcttcttctgcgcgtacatcaaccagtgtcgcctcgccgaggccggggacgccagggccgcggcggcggcggcggccggcgggggagccggaggagggccgtccaggagagggaagcgcgggctggacccggcggtggtggccacgttcccgatcgtgccgtacagggaggtggtgaagcacaagatcggcaagagcgtgctggagtgcgccgtgtgcctgacgtcgttcgacgacggcgacgacctccggctgctgccgcactgctcgcacgcgttccacccggagtgcatcgacccctggctggagtcccgggtcacgtgcccgctgtgccgcgccaacctcgagaagcctccgccgccgccgccgccgctgccggcggcggcggcggcgtccccttcgccggagcggtcgccgcggtgccagccttcgccgccgccgccgccgccgccgcacgccctggtgataccggtggaggacgaggaagacgacagcgacgaggacgacaggaaggaggaggccgtggagctcgagatgctgcgcagcgagcggcgcgccgcgaggctgccgaggtcgcactcgacggggcactcgctggtcgcgtcggcggccgccgccgccgagtccggcgaccacgagcggttcacgctgcggctgccgcagcacgtgcgggacgaggtgctccggtcgctccgcctccgccacgccgccagcctggtcaacctctcggacatgagctccgaggggagctcgaggggaggacggcgtgcattaggcctcgccttcggcaacggcggcgggagcagccacggcggccgccggtggcaggcgttcttggcgaggacggtgtcatgggcgcgaggcggaggcgacggctcggtgcgcaggggctgggacggctcgacgagaagaggaaaagatgacgccgagtcgagcagaaagggggcgacctcaccggcggccggccggccgtgatcgccgccgacgccggcttcgccaccacgtcggaaaccgcaaaaagaaacaaaaaaaaatgcgtgctttgcttccatttctttttcttttttttatttaggaatccatttctgatagactaatcagtacactgttcttgcatcgtgaggcctgaaattttccaacttcttttgaccctcgcaaagaaaa
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| CDS seq | atggggacgcgcgagctcctcgtcgttcttgccgtcgtcgtcatggccgccgtcggcgccggcgcgcagtcttcttcggcgtcgccggcgccggcgacgtcgcaggcaccgacggtggtgaagcacaagatcggcaagagcgtgctggagtgcgccgtgtgcctgacgtcgttcgacgacggcgacgacctccggctgctgccgcactgctcgcacgcgttccacccggagtgcatcgacccctggctggagtcccgggtcacgtgcccgctgtgccgcgccaacctcgagaagcctccgccgccgccgccgccgctgccggcggcggcggcggcgtccccttcgccggagcggtcgccgcggtgccagccttcgccgccgccgccgccgccgccgcacgccctggtgataccggtggaggacgaggaagacgacagcgacgaggacgacaggaaggaggaggccgtggagctcgagatgctgcgcagcgagcggcgcgccgcgaggctgccgaggtcgcactcgacggggcactcgctggtcgcgtcggcggccgccgccgccgagtccggcgaccacgagcggttcacgctgcggctgccgcagcacgtgcgggacgaggtgctccggtcgctccgcctccgccacgccgccagcctggtcaacctctcggacatgagctccgaggggagctcgaggggaggacggcgtgcattaggcctcgccttcggcaacggcggcgggagcagccacggcggccgccggtggcaggcgttcttggcgaggacggtgtcatgggcgcgaggcggaggcgacggctcggtgcgcaggggctgggacggctcgacgagaagaggaaaagatgacgccgagtcgagcagaaagggggcgacctcaccggcggccggccggccgtga
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| Protein seq | MGTRELLVVLAVVVMAAVGAGAQSSSASPAPATSQAPTVVKHKIGKSVLECAVCLTSFDDGDDLRLLPHCSHAFHPECIDPWLESRVTCPLCRANLEKPPPPPPPLPAAAAASPSPERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSERRAARLPRSHSTGHSLVASAAAAAESGDHERFTLRLPQHVRDEVLRSLRLRHAASLVNLSDMSSEGSSRGGRRALGLAFGNGGGSSHGGRRWQAFLARTVSWARGGGDGSVRRGWDGSTRRGKDDAESSRKGATSPAAGRP |
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| Function | E3 ubiquitin-protein ligase ATL6 [UniProtKB/Swiss-Prot:Q8RXX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0016010 | OsKeNa_04g0016010.01 | Chr04 | 21146850 | 21148202 | + | NAM | ||
| CDS seq | atggggacgcgcgagctcctcgtcgttcttgccgtcgtcgtcatggccgccgtcggcgccggcgcgcagtcttcttcggcgtcgccggcgccggcgacgtcgcaggcaccgacggtggtgaagcacaagatcggcaagagcgtgctggagtgcgccgtgtgcctgacgtcgttcgacgacggcgacgacctccggctgctgccgcactgctcgcacgcgttccacccggagtgcatcgacccctggctggagtcccgggtcacgtgcccgctgtgccgcgccaacctcgagaagcctccgccgccgccgccgccgctgccggcggcggcggcggcgtccccttcgccggagcggtcgccgcggtgccagccttcgccgccgccgccgccgccgccgcacgccctggtgataccggtggaggacgaggaagacgacagcgacgaggacgacaggaaggaggaggccgtggagctcgagatgctgcgcagcgagcggcgcgccgcgaggctgccgaggtcgcactcgacggggcactcgctggtcgcgtcggcggccgccgccgccgagtccggcgaccacgagcggttcacgctgcggctgccgcagcacgtgcgggacgaggtgctccggtcgctccgcctccgccacgccgccagcctggtcaacctctcggacatgagctccgaggggagctcgaggggaggacggcgtgcattaggcctcgccttcggcaacggcggcgggagcagccacggcggccgccggtggcaggcgttcttggcgaggacggtgtcatgggcgcgaggcggaggcgacggctcggtgcgcaggggctgggacggctcgacgagaagaggaaaagatgacgccgagtcgagcagaaagggggcgacctcaccggcggccggccggccgtga
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| Protein seq | MGTRELLVVLAVVVMAAVGAGAQSSSASPAPATSQAPTVVKHKIGKSVLECAVCLTSFDDGDDLRLLPHCSHAFHPECIDPWLESRVTCPLCRANLEKPPPPPPPLPAAAAASPSPERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSERRAARLPRSHSTGHSLVASAAAAAESGDHERFTLRLPQHVRDEVLRSLRLRHAASLVNLSDMSSEGSSRGGRRALGLAFGNGGGSSHGGRRWQAFLARTVSWARGGGDGSVRRGWDGSTRRGKDDAESSRKGATSPAAGRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.269563 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0450300 | RBH | 0.0 | 0.321057 | 0.327376 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37730 | RBH | 0.0 | 0.261245 | 0.146407 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0450300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015130 | SBH | 0.000000 | 63.848682 | 9.188265 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015730 | RBH | 0.0 | 3.778111 | 1.707116 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015310 | RBH | 0.0 | 0.160169 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015620 | SBH | 32.047806 | 31.702349 | 42.784405 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0350400 | RBH | 0.6662925 | 9.4854345 | 8.5039815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014480 | RBH | 0.000000 | 0.289308 | 0.052446 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0347200 | RBH | 1.1547845 | 12.482828 | 2.652111 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015090 | SBH | 0.132769 | 0.014571 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014820 | RBH | 0.0 | 2.167565 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014860 | RBH | 0.000000 | 2.946746 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015460 | RBH | 0.0 | 0.602675 | 0.522897 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015600 | SBH | 0.108493 | 4.139742 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014710 | RBH | 0.0 | 0.586386 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014770 | SBH | 0.0 | 0.000000 | 35.427826 |
