Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0015390 | OGI:04067530 | 9/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:20763403-20769794 | ||||||||
| Gene Symbol | OsRab2A1, OsRab2, - | ||||||||||
| DNA seq | atgctgcccctcgcgcgccccgtccaccaccaccaccaccaccatccacgcctctgccctacagctccgtggcgctcccctcctcctgcccgaggagcacgcctccgcagccgcgcccggggaccacaaaccctcgccgcgcgggcgcgccctccgagagcggaggcgggagaagccgaaactgccgcgggcggaacgggcgccaccaccaccaccggcggcggcggcggcagcgtcttgtccttcctgtgcccgctcctcaagctcctcggggtaattgatttgctgccgattttgctgccagttcgccgaattttatgggcttgtttgctcacacagtgcgcgttcttttttttctctgtgaatgttcacgcagggaggtgacccttcacaggagcggaatgacatcgtggaggtaatctctggcttttggctcgtaaaattaacccttttgagatgaaaaatcttaagagaacttgaatttcagtgtagaatttagtgaaaaaattgatgttcgatcgattggatatcccatgaagcaaattcatgtgggcaaaaggaagcttttgttgtttgtaactcattgctgctgatgctgtaatctgtaatgtgagcaaaatctcatcctgatactaaaagaatttattggtcttaactgcaaatggcaagctaaagagattaagtataaatgcaagcatttctattcgggtaccaattgctaggccattgatgaatggctattaattgttacatttttttgccaggtcgctacatcttcactctcaagtttagctagactaccatggggctcaagtgtatctactagcagcgagaataatgttaacccaacaacaagtgcgccgactctgcaattgtacgagtttggtaaaaaatattagtactttggtttctgattcgtcagcatcaaaacttagttattttcagaatgttctgaacgatttcttcgtttttcttcccaatagaggcatgccccttctgtaggagagttcgggaggccatgactgagcttgacctttctgcagaggtatcttacttcttacaatgcttttccaaattctctccaattctgagattatacattgatgattaagaatatgatgcaatcaacatagctttgctcaatatcgttttcttatagactttcaatgtagctgtgaagcaatgtacgtcgaggaaatacatatgaacatgttttgattagttaataacttcctctccaaatatgaataaaatacaggtatatccttgcccaaaaggatcgctaagacatagagatgtggtcaagaaaattggagggaaggagcagtacgtgtttgtcaactatgcatttatactaattacagctgcagtaatgcttcagctgaacagaatgcaaagacctggacctaaagtgtcactgaactggtgtcattctgatacacaggtttccacttcttgttgatgcaagtaatggtgtcaccatgtatgaaagtggtaacatccaattaaacctttcttttaatatttctgtaagcttctaccgtggagttttttgtactcttttgttcttggcataaaaacatcatatcccttaactatgtttaagatgagtagttttcctattttgatagctaataaactacaaaattaatatggatactaatgagtcttgaatgtgcaggagatattgtaaaatacctgttcagacagtacggagaaggaaagagtccttcatttggactccttgagaggtctcttttgcatgttttaatcagctatatctattgtacctcttgaaggttttagagataatatacttttctatgatttagatccaaaatactttagaagaaactactgcgatgctagacaagtttccttttatctttggctgttctcagggcatctccatattttttgcagtacaattctcacaggatgggtgcctactcttcttcgagctggaagaggaatgacattgtggaacaaagctggtgaggtacctgaagacaagctagagctcttctcgtttgagaataatactgtaagaacattgcttatatttcctatccttttctagaagtttgacctatttatttctcatatgtgatggtttatagaagttggctctattttatttctcatatgtggttggtgattcagtatgcaaggattgtccgtgaggctctctgtgaattggaggttccttatatcctccagaatgttggagaggggtcctcaaagatggatttgcttcaaaagatatcaggttctaagcaggtaaagcgagtcatatgatgcattttgaaaagtaataagtcggaaggagcagcaataaaattatttgagaaatttggtgatggagactctgatactcatgttacctcataattcatggaattctatatgcccagtattttttgttacgcgtgcatattgtttgacttgcagttttagcatcttacgccccattttttaatacttattaccctttgtgtttcaggtgccatatctgattgatcctaatactgggttccaatcgggggaccataagaagatactatcctacttatttcaacaatactcgactagtgggtagtttctttctgaacctctgatagacgtgcgttctccagtagcaagcagacatgacttgagagtcttcagtgtatattttgctctgagaagccagtagtgtttcatggttcttgcctggtagatttctctttcttaacttgtgccatctttaagtactcgggtctacatacaaagtagcgcagcttttggtggcaccgactcgcacaaccacacaagattacaaggagagtggcacatgaaactgccggcagctgtccaatgtatcttggattctgctgccacaattttctgtgctatcttcatggcgtctccagctcaaagtactaacaatttctttgtactttggactattttagtattgtactggaagaggtacgcgacagcatcgtgttcatcctgggcaaggcacccgtgaatcttgtcttggatttttttaaaacaaaacagcctgcaggggtgagggaacactccaacgtcgtgaggataaaaatacaaaaaaaaatgttgtacgggctgatgagttgctttgtttatacttctcctaggtcgtctcccatattctcaccaccttcttgttcctggagaacctcctctccagctctgtccaagcatcaattctctttcttttgcttcctgctgatacctttgatcctgagcagaagaagctgcagaagtgggttaaggcaggaagagccatgaacaacgaattgtaatcctctaTtttttttttcttttcgatcttggaatttacggctaattaatgtggtttctgttgttatctatccgttcttcggttgtactgaaaatgctgcttgcttatccccctgatgagttgccagtgattacctgttcaagctgctcctcatcggcgactcctcggtcggcaagtcatgcttcctcctccgattcgcggtgagtttttgagttttctcgcgaatggcaatgcggatttggtttccaagattttgggtcatatattttgctgtggtttctgtccctctttggaatgattgattgattgatgtgttcttcttcatccaggacgactcctacgtcgacagctacatcagcacgatcggtgttgacttcgtgagtcccccctctctttcttgcaaaatgcccgcattgttcttcgttctttcgtctctgtgatcatgccggtttctgattctgattcattcgagtccactcccttgttaatttgttcatctgcagaagattcgcacgatcgagatggacgggaagaccatcaagctgcagatcgtgagtgtctctcgccgatcccctgaaacctcttcgcgattagcttccgagcagagcagcgcgcggcggcggcggcctatctcgcaccgatctcttcgtcggtaatcgccggccgccgccgacccggggccgtcggagagagagagtggattctcgccggattgtctcgtagatggccggcgatgctgccgcgtgcgtgtggggccgaagccgagggaggttgtgcccgcgtggctcgccggagctccgccgccccgccgcgtggcggggtggcgccgtggcggtgcgagggacacaggaggatggtgagacgagtatggccttgtttgaatgggcctcaacgcggcccatgatatcggtgggctcgtattgaggcccatctaaaagaggcctaagcgagggccttttccgcataaaacctgatgccctccatctgagccgcgcgctctctatccaacggtcacttcgcgtaccaggttctagaatttaacgtggaagtcaagtccctgctttggatcactattagaaaaaaagtgatattagcaataaaaaaatgctataaaataaactgcgacgaaaaacaaaaaattaaattcaaaattaggttctataatttaattttagcttatataagtatgaacataagcgaaacaatgagatgtgctagacgatcctgaaattttgctaagataccctgcttcggatcaattttgttcgtgcgatcctagaatttcgcataaaggctcttcttcttcggatctcaattattgctagtgtagtgattctggaaaatttttagcgatccaggattttttttgcaaatagacccaactttgggccgcgtctattgctagcgatcctggaattttgcaaaccggtaaactcggatatacgagacgacggacgtgtcgacgtcgccgccggcgatggccagctcctcgcccgtaccgccgccgcgttttttcccgggctccggcgacgtcgggcggaggtaactcctcctccaccgattttgcgcgttgatcttgttgccccacttcgctgcgatttagggtgggctcggagaatagctggatgcctcagtcatgcctggatcccgccctctggtgattttggggggaaatttcgatctagttcgttatcgagatgcactttctaatggagagtaggggattggagtttgcttccgtgcttactgatgatatataaccggtggttgctagatatcgctgaatcctgaatcaatgtgccagttctgatttctgtgcttgatttgtttttttcgcttgaatttgtaaaccgaaccatttgtgaaaattaaaattagtgatttgagattgtgcgattacacttggaggtattggttcttcctgaatgaattctggcatcttatcatttctagtgccaaatgacttctgtacttcctacataatcattagatcgaactatgaaatagaatatgttgcacagatcagaagctgcaatcctctaatgtttagtgtgacattggtacttgcattgcaaacagtgggacacagcaggacaggagcgattcagaaccatcaccagtagctactaccggggagctcatgggataattgtaagctttttcagcctatgaacaattttttttgccattttcatgtgtgttttcagtaaagaaaaaaaaagggttcatgtgaatgcatccagatcgtctatgacattacggatatggagagcttcaacaatgtgaaggagtggatgagcgagatcgacaagtacgccaatgacagcgtatgcaagcttcttgttggtaacaagtgtgatctggcagagagcagagttgttgaaactgcagtagcacaggtcgcattgcaaaccctattacactatggatggcttatccatgcagaagttatgttatattttgttaagctaaatgaaaaggtacgaatcactgcaggcttatgctgatgagataggcattccattccttgaaacaagtgctaaggactcgatcaatgtcgaagaggctttcttggctatgtgtgccgcaatcaaaaagcagtaggataaatgacaatgcataaagtttcatagtctcttataaacaagttattctgctgaatcttgtgtctaatctgcagaaaatctgggagccaggcagccctggagaggaaggcatccaatctagttcagatgaaaggtcagccaattcagcaacagcagcagccacagaagagcagctgttgttcatcgtgatggcacaatggtctggcatcttccatgaattgggatgaacatggcatatctgttaagtgtgttcctctgtcttctcatagatttgagcactttagttactgcaaggtgtcgccacatctgttgaaaatcgagtcaagaacctaatttcctgtctttgatgattctctaataaacattgcatctagaaagttgtaccatatttaatagatacatgtagtttccagtctgaaaggtcaatttacacatgcaaaataatgcacagatgcaaatgcatatattttttccct
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| CDS seq | atgctgcccctcgcgcgccccgtccaccaccaccaccaccaccatccacgcctctgccctacagctccgtggcgctcccctcctcctgcccgaggagcacgcctccgcagccgcgcccggggaccacaaaccctcgccgcgcgggcgcgccctccgagagcggaggcgggagaagccgaaactgccgcgggcggaacgggcgccaccaccaccaccggcggcggcggcggcagcgtcttgtccttcctgtgcccgctcctcaagctcctcgggggaggtgacccttcacaggagcggaatgacatcgtggaggtcgctacatcttcactctcaagtttagctagactaccatggggctcaagtgtatctactagcagcgagaataatgttaacccaacaacaagtgcgccgactctgcaattgtacgagtttgaggcatgccccttctgtaggagagttcgggaggccatgactgagcttgacctttctgcagaggtatatccttgcccaaaaggatcgctaagacatagagatgtggtcaagaaaattggagggaaggagcagtttccacttcttgttgatgcaagtaatggtgtcaccatgtatgaaagtggagatattgtaaaatacctgttcagacagtacggagaaggaaagagtccttcatttggactccttgagagtacaattctcacaggatgggtgcctactcttcttcgagctggaagaggaatgacattgtggaacaaagctggtgaggtacctgaagacaagctagagctcttctcgtttgagaataatacttatgcaaggattgtccgtgaggctctctgtgaattggaggttccttatatcctccagaatgttggagaggggtcctcaaagatggatttgcttcaaaagatatcaggttctaagcaggtgccatatctgattgatcctaatactgggttccaatcgggggaccataagaagatactatcctacttatttcaacaatactcgactagtggtattgtactggaagaggtacgcgacagcatcgtgttcatcctgggcaaggcacccgtcgtctcccatattctcaccaccttcttgttcctggagaacctcctctccagctctgtccaagcatcaattctctttcttttgcttcctgctgatacctttgatcctgagcagaagaagctgcagaagtgggttaaggcaggaagagccatgaacaacgaatttgattacctgttcaagctgctcctcatcggcgactcctcggtcggcaagtcatgcttcctcctccgattcgcggacgactcctacgtcgacagctacatcagcacgatcggtgttgacttcaagattcgcacgatcgagatggacgggaagaccatcaagctgcagatctgggacacagcaggacaggagcgattcagaaccatcaccagtagctactaccggggagctcatgggataattatcgtctatgacattacggatatggagagcttcaacaatgtgaaggagtggatgagcgagatcgacaagtacgccaatgacagcgtatgcaagcttcttgttggtaacaagtgtgatctggcagagagcagagttgttgaaactgcagtagcacaggcttatgctgatgagataggcattccattccttgaaacaagtgctaaggactcgatcaatgtcgaagaggctttcttggctataaaatctgggagccaggcagccctggagaggaaggcatccaatctagttcagatgaaaggtcagccaattcagcaacagcagcagccacagaagagcagctgttgttcatcgtga
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| Protein seq | MLPLARPVHHHHHHHPRLCPTAPWRSPPPARGARLRSRARGPQTLAARARPPRAEAGEAETAAGGTGATTTTGGGGGSVLSFLCPLLKLLGGGDPSQERNDIVEVATSSLSSLARLPWGSSVSTSSENNVNPTTSAPTLQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVKKIGGKEQFPLLVDASNGVTMYESGDIVKYLFRQYGEGKSPSFGLLESTILTGWVPTLLRAGRGMTLWNKAGEVPEDKLELFSFENNTYARIVREALCELEVPYILQNVGEGSSKMDLLQKISGSKQVPYLIDPNTGFQSGDHKKILSYLFQQYSTSGIVLEEVRDSIVFILGKAPVVSHILTTFLFLENLLSSSVQASILFLLLPADTFDPEQKKLQKWVKAGRAMNNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEMDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKEWMSEIDKYANDSVCKLLVGNKCDLAESRVVETAVAQAYADEIGIPFLETSAKDSINVEEAFLAIKSGSQAALERKASNLVQMKGQPIQQQQQPQKSSCCSS |
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| Function | GTP-binding protein YPTM1 [UniProtKB/Swiss-Prot:P16976] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0015390 | OsKeNa_04g0015390.01 | Chr04 | 20763403 | 20769794 | + | NAM | ||
| CDS seq | atgctgcccctcgcgcgccccgtccaccaccaccaccaccaccatccacgcctctgccctacagctccgtggcgctcccctcctcctgcccgaggagcacgcctccgcagccgcgcccggggaccacaaaccctcgccgcgcgggcgcgccctccgagagcggaggcgggagaagccgaaactgccgcgggcggaacgggcgccaccaccaccaccggcggcggcggcggcagcgtcttgtccttcctgtgcccgctcctcaagctcctcgggggaggtgacccttcacaggagcggaatgacatcgtggaggtcgctacatcttcactctcaagtttagctagactaccatggggctcaagtgtatctactagcagcgagaataatgttaacccaacaacaagtgcgccgactctgcaattgtacgagtttgaggcatgccccttctgtaggagagttcgggaggccatgactgagcttgacctttctgcagaggtatatccttgcccaaaaggatcgctaagacatagagatgtggtcaagaaaattggagggaaggagcagtttccacttcttgttgatgcaagtaatggtgtcaccatgtatgaaagtggagatattgtaaaatacctgttcagacagtacggagaaggaaagagtccttcatttggactccttgagagtacaattctcacaggatgggtgcctactcttcttcgagctggaagaggaatgacattgtggaacaaagctggtgaggtacctgaagacaagctagagctcttctcgtttgagaataatacttatgcaaggattgtccgtgaggctctctgtgaattggaggttccttatatcctccagaatgttggagaggggtcctcaaagatggatttgcttcaaaagatatcaggttctaagcaggtgccatatctgattgatcctaatactgggttccaatcgggggaccataagaagatactatcctacttatttcaacaatactcgactagtggtattgtactggaagaggtacgcgacagcatcgtgttcatcctgggcaaggcacccgtcgtctcccatattctcaccaccttcttgttcctggagaacctcctctccagctctgtccaagcatcaattctctttcttttgcttcctgctgatacctttgatcctgagcagaagaagctgcagaagtgggttaaggcaggaagagccatgaacaacgaatttgattacctgttcaagctgctcctcatcggcgactcctcggtcggcaagtcatgcttcctcctccgattcgcggacgactcctacgtcgacagctacatcagcacgatcggtgttgacttcaagattcgcacgatcgagatggacgggaagaccatcaagctgcagatctgggacacagcaggacaggagcgattcagaaccatcaccagtagctactaccggggagctcatgggataattatcgtctatgacattacggatatggagagcttcaacaatgtgaaggagtggatgagcgagatcgacaagtacgccaatgacagcgtatgcaagcttcttgttggtaacaagtgtgatctggcagagagcagagttgttgaaactgcagtagcacaggcttatgctgatgagataggcattccattccttgaaacaagtgctaaggactcgatcaatgtcgaagaggctttcttggctataaaatctgggagccaggcagccctggagaggaaggcatccaatctagttcagatgaaaggtcagccaattcagcaacagcagcagccacagaagagcagctgttgttcatcgtga
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| Protein seq | MLPLARPVHHHHHHHPRLCPTAPWRSPPPARGARLRSRARGPQTLAARARPPRAEAGEAETAAGGTGATTTTGGGGGSVLSFLCPLLKLLGGGDPSQERNDIVEVATSSLSSLARLPWGSSVSTSSENNVNPTTSAPTLQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVKKIGGKEQFPLLVDASNGVTMYESGDIVKYLFRQYGEGKSPSFGLLESTILTGWVPTLLRAGRGMTLWNKAGEVPEDKLELFSFENNTYARIVREALCELEVPYILQNVGEGSSKMDLLQKISGSKQVPYLIDPNTGFQSGDHKKILSYLFQQYSTSGIVLEEVRDSIVFILGKAPVVSHILTTFLFLENLLSSSVQASILFLLLPADTFDPEQKKLQKWVKAGRAMNNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEMDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKEWMSEIDKYANDSVCKLLVGNKCDLAESRVVETAVAQAYADEIGIPFLETSAKDSINVEEAFLAIKSGSQAALERKASNLVQMKGQPIQQQQQPQKSSCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.211685 | 0.432676 | 0.681562 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0470100 | SBH | 5.023602 | 4.032641 | 6.366091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39440 | SBH | 3.482121 | 2.710293 | 1.832605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0470100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014540 | RBH | 0.081236 | 5.010158 | 0.377118 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022920 | SBH | 0.905856 | 21.058226 | 6.626723 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015110 | RBH | 0.565449 | 0.000000 | 1.416448 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014700 | RBH | 0.000000 | 0.090834 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015030 | RBH | 3.104651 | 8.377200 | 1.887709 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0344100 | SBH | 3.0257975 | 1.109126 | 1.2726965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013860 | RBH | 0.205933 | 0.154800 | 0.291690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0340400 | RBH | 4.0830785 | 1.1012625 | 5.555402 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014490 | RBH | 0.085067 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014230 | RBH | 0.628927 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014200 | RBH | 4.383937 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014830 | RBH | 0.335621 | 0.000000 | 0.188033 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015040 | RBH | 0.042685 | 1.344513 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014110 | RBH | 0.072173 | 2.561522 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014130 | RBH | 0.181258 | 1.851546 | 0.000000 |
