Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0011950 | OGI:04060730 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:17626875-17629084 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cagtatagaaaacattgtggaacgttatgagaattctctaacagcacaaaagggagtacatggcaggcgcactccggaaaaggtaaaatgcggataatagcaacagaaataaaacactatataagaagtgcctttgttcgcattttaatcgggataaacggatatataatttctctgatcctgtgccatgaatttatttttaatagtagttcaatcattctatggttatatcatatttaccttttttttcagagtagaaacatcactacctgagacaaaaagactcatttttactgtgtaaaacattttacaaagtatggctaacaggtgctggcagaaatttcaactaattaaaagaagtgtggctagttacaaatttgacacttgacccatgtatttgtataaaaaaattgaatcatgttgtgattttagtggctttgtccgataagttaattatatattgtacacttgcagagagacactcattggtgaaaattttcctgccggtgctgatgataattattttaccataccaagggcaaggattttcatgttcccaaggaaacaacagataaagggtcgaacgatgatgacatgcggtatctgacaagtgcctctgcaagtaacaacttcaaccaaaaatattttcaaacagttgactaaatatgagaaaattgcagatctattgatgaaacagacatatccacattgaacatggaccagcttagccaaattgaaagattactggaagatgaactaaggtggacaagggcaagaaaggtatgtggcaccttagtaatagacagaatagaagaagacaacatgtatctctttagaacatgaatatttcatttattttaacttattagattatgtgcatcacataaagatttttgcgtagacattccatttcttttccaggaaagtgtttaccttactattgtaccttggaagatcttccttagctgtctcactattttacttgatagaaataccaaaatattgttcagtttggtcctttctgtgattcacaactcacaagttagtctctgtcacacggtaatttgtaagaatggtttgtccaaaatgttccttttctcatctaatgctgattcattactacaatctagaagaaacactagtgtgttccttaggataataatctagtatttcaaaccgatcaatttgaggcaatattaattgcccattctgaattcctgatggaagaaaatacttgctatcccaatacatcattgtgtactcaaacagtggatgtatcaacttgctgcattactctttcagtgtccttgagagaattttggtttgatctgcaaccaaattcacttcaaatctgacagtatatctttgtacggacataggtggtggtggatagaagtgccagattacaaaaaaaggtatgcactgagtagtctgtaccaaaactaagttttgtaaaacgtaagttagctcgatttgtagtccatacaagtgaaaactggtgcatgtcagcaataatcagaatccctgatgtccatttggaaatcatgaacaaattgaccatgctacgcatgctttgcaggtgcaggggaaagcggcgattgttgaggttgagaggggctccatggagattcccatagaatctgggcaggagaaggtgatcactggatgcagtaactatttctgtcagtcacaaacactccaatctttctgcaaaccctgcaaacattcacttgctactctgcttgtaagcaggaacagataggaggggaggctgtggaggagcaacggagccggactacgccgttggacctcaacatgccttgctgggacgcaggtcctctgcagtaaacgtagataacattatctttgcacagcaatctgagtctgtctaacgttagtcgctactactgtccccggtactaacagtgtcgtaagttactgttgctgggaaactactactacgctttgctaatctttttttactgtagccgttcatatccaggatactgtgccgtaactggagcacaccagattcaaatcaaatgtactgtgacaccattgtattttaaaatgtgtttttctcctacttcctactagttctagttcatgttcggtggaaaattgtaaaccaaataaaccggcatcggtattggtcgatgtgtacccgtgggctctgtaataagactgtccgtgcctgcaaattagtactg
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| CDS seq | atgcgatctattgatgaaacagacatatccacattgaacatggaccagcttagccaaattgaaagattactggaagatgaactaaggtggacaagggcaagaaaggtgcaggggaaagcggcgattgttgaggttgagaggggctccatggagattcccatagaatctgggcaggagaaggaacagataggaggggaggctgtggaggagcaacggagccggactacgccgttggacctcaacatgccttgctgggacgcaggtcctctgcagtaa |
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| Protein seq | MRSIDETDISTLNMDQLSQIERLLEDELRWTRARKVQGKAAIVEVERGSMEIPIESGQEKEQIGGEAVEEQRSRTTPLDLNMPCWDAGPLQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0011950 | OsKeNa_04g0011950.01 | Chr04 | 17626875 | 17629084 | + | NAM | ||
| CDS seq | atgcgatctattgatgaaacagacatatccacattgaacatggaccagcttagccaaattgaaagattactggaagatgaactaaggtggacaagggcaagaaaggtgcaggggaaagcggcgattgttgaggttgagaggggctccatggagattcccatagaatctgggcaggagaaggaacagataggaggggaggctgtggaggagcaacggagccggactacgccgttggacctcaacatgccttgctgggacgcaggtcctctgcagtaa
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| Protein seq | MRSIDETDISTLNMDQLSQIERLLEDELRWTRARKVQGKAAIVEVERGSMEIPIESGQEKEQIGGEAVEEQRSRTTPLDLNMPCWDAGPLQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.280246 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31790 | RBH | 0.577330 | 0.392714 | 0.478153 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011170 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011560 | RBH | 0.000000 | 4.083606 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0303200 | RBH | 0.171687 | 2.554403 | 14.1562615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0299600 | RBH | 3.00095 | 5.116234 | 0.063361 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011160 | RBH | 0.0 | 0.288828 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010750 | RBH | 0.0 | 6.275567 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011280 | RBH | 0.000000 | 0.0 | 0.429238 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010650 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010720 | RBH | 0.0 | 0.0 | 0.0 |
