Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0008050 | OGI:04046960 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:12530476-12531435 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcctccgggagagggccaaacttgtgctgcagaaccgcgatgaattcgctggaggtgcagccaccaacgctgacggttgatgcacagttcttgtcggtttggtctgtgcagattttgccggccttctccagtttctcttctttgatgtaaccccagtaatttgggaagtgatctttctcacgtacctcggtgtaagcctgcgacaagaaaaaaaaagcttcaattcaattctcttttaagatttagattattggtctatataaaataaaaccccctgcttattaagctcggttgaccttatttagttagttaattactccctcaggttagaagtaattgttattttggacatattataatatttgattagaacaagtttttaccagtgttttattgcaatatcaacaattattaatgttggcatgttgcgacgatgagtggtcatacttgctggtggtgcagtacttacagagttctgcgtggcgctccaaggaagggaccatgcgaccatgaagtcccggacctggccgtcgacgtcgcggccgcggaagacgcgcgccgcctcgcagccgatcgactgcgccgtcgggtgggcgtggaggaacgccagccactggccgttctggaacgacgccggcggctgctcgtggtagacgtagccgtaccagtccatcgacccgccctccccgtcgacgagctccagcgcggcgccggtggcgttgtagacgagcaccatggcggagacgccgtcgccgtaggaggccttgagccccaccgcgtgctgcagcgcgtccaggttcttgccctcggcgtggatgaggcgcatcgcctcccgcgcgcggtccacctggctgatgctcttcccggcgtaccgcgacatcgcctccagcgtctcgtcggtgatgggcacgccgaatgtgctcatgctttatacttagttactttgtaaagctagc
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| CDS seq | atgagcacattcggcgtgcccatcaccgacgagacgctggaggcgatgtcgcggtacgccgggaagagcatcagccaggtggaccgcgcgcgggaggcgatgcgcctcatccacgccgagggcaagaacctggacgcgctgcagcacgcggtggggctcaaggcctcctacggcgacggcgtctccgccatggtgctcgtctacaacgccaccggcgccgcgctggagctcgtcgacggggagggcgggtcgatggactggtacggctacgtctaccacgagcagccgccggcgtcgttccagaacggccagtggctggcgttcctccacgcccacccgacggcgcagtcgatcggctgcgaggcggcgcgcgtcttccgcggccgcgacgtcgacggccaggtccgggacttcatggtcgcatggtcccttccttggagcgccacgcagaactctgcttacaccgaggtacgtgagaaagatcacttcccaaattactggggttacatcaaagaagagaaactggagaaggccggcaaaatctgcacagaccaaaccgacaagaactgtgcatcaaccgtcagcgttggtggctgcacctccagcgaattcatcgcggttctgcagcacaagtttggccctctcccggaggagtga
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| Protein seq | MSTFGVPITDETLEAMSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHAVGLKASYGDGVSAMVLVYNATGAALELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQVRDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQHKFGPLPEE |
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| Function | 23 kDa jasmonate-induced protein [UniProtKB/Swiss-Prot:P32024] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0008050 | OsKeNa_04g0008050.01 | Chr04 | 12530476 | 12531435 | - | NAM | ||
| CDS seq | atgagcacattcggcgtgcccatcaccgacgagacgctggaggcgatgtcgcggtacgccgggaagagcatcagccaggtggaccgcgcgcgggaggcgatgcgcctcatccacgccgagggcaagaacctggacgcgctgcagcacgcggtggggctcaaggcctcctacggcgacggcgtctccgccatggtgctcgtctacaacgccaccggcgccgcgctggagctcgtcgacggggagggcgggtcgatggactggtacggctacgtctaccacgagcagccgccggcgtcgttccagaacggccagtggctggcgttcctccacgcccacccgacggcgcagtcgatcggctgcgaggcggcgcgcgtcttccgcggccgcgacgtcgacggccaggtccgggacttcatggtcgcatggtcccttccttggagcgccacgcagaactctgcttacaccgaggtacgtgagaaagatcacttcccaaattactggggttacatcaaagaagagaaactggagaaggccggcaaaatctgcacagaccaaaccgacaagaactgtgcatcaaccgtcagcgttggtggctgcacctccagcgaattcatcgcggttctgcagcacaagtttggccctctcccggaggagtga
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| Protein seq | MSTFGVPITDETLEAMSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHAVGLKASYGDGVSAMVLVYNATGAALELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQVRDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQHKFGPLPEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.097714 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0308400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g24319 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0308400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008150 | RBH | 0.0 | 3.116506 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007810 | RBH | 0.0 | 14.733067 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007600 | RBH | 0.0 | 1.302342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007780 | SBH | 0.000000 | 18.323717 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227400 | RBH | 0 | 0.390793 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007510 | RBH | 0.000000 | 2.338950 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227900 | SBH | 0.0459495 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007330 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007580 | SBH | 0.0 | 8.782088 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007660 | SBH | 0.0 | 93.083939 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007440 | RBH | 0.0 | 1.212814 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007900 | RBH | 0.000000 | 15.263098 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007530 | RBH | 0.0 | 50.860092 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007640 | RBH | 0.0 | 4.200902 | 0.0 |
