Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0308400 | OGI:04046960 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:13934207-13937518 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCCTCCGGGAGAGGGCCAAACTTGTGCTGCAGAACCGCGATGAATTCGCTGGAGGTGCAGCCACCAACGCTGACGGTTGATGCACAGTTCTTGTCGGTTTGGTCTGTGCAGATTTTGCCGGCCTTCTCCAGTTTCTCTTCTTTGATGTAACCCCAGTAATTTGGGAAGTGATCTTTCTCACGTACCTCGGTGTAAGCCTGCGACAAGAAAAAAAAAGCTTCAATTCAATTCTCTTTTAAGATTTAGATTATTGGTCTATATAAAATAAAACCCCCTGCTTATTAAGCTCGGTTGACCTTATTTAGTTAGTTAATTACTCCCTCAGGTTAGAAGTAATTGTTATTTTGGACATATTATAATATTTGATTAGAACAAGTTTTTACCAGTGTTTTATTGCAATATAAAAGAAGCCGTCTCTCTCTATTTTTCCACACACCTTAAGCAAAAAGCTTCATTTATCTTTCAAGTTTAGTGTAGGCTCTAGAGTATATAGTGGAATAGAATCTTCAGTCCTCGAAGTCTTCAAAAGAATTCGGGTATAGCTTTAGTAGCTTTTCCTTCTTTTGTAAGAATTGTACATTATTTAGAATACTCTTCTTTGTACTATTTTGGTATTGTACTATTTTCCGAGTATATGAATATCAGTTTTATTATATATCCGAGTAATATTTATTATGATGCTAGCTTATCTGGGAGATGGAATAGTGTGGGTATAATGATCGTGTATACGATGACTATGTCATTACGATGATATTAGAGTAGTATTTGGTAATTTAAGCGTGGTGTTTAGATTACTGGATATCATTATTTGTGGTTATATGTCGCGCAAGCGAGGTGTGCCACTGATGGTGACAACTCAGTACGAATATTCCTCCGAGCGTGTATATAGTCCTAAGTTAATTTCCCGAGGAGGGTACTTCTCCGTATTTAGCCCCGGTTGGATGGTCATGACGGATTGTCGTAAGAAACTCGGCAATTGGGGATGGCTTCTCAAAGCACCATGAGGGCATCGAAAAGAGGGTATTAGCTAAGTAATTATATAAATAGGATGTATGTATAATATGTATGTATACTAGAAGTATAGGAATAGGCTCTTTCTATTTTCTTCCCACTTGCCTAGATAATTACGAATGAGAGTATAGATGCTTCTGCTTAGTGTCACTCTACCCTTGATTTATATTAACCCCTGCCTAGACTTTGGTTATTACAAGTCATATATAAATTATTAGTACGGTTCTTTCTATTATAATCTTCCCACGGGATTAAACAAATACGATATCCTTGAAATACTCTCGGGTGAAATGCTACAATAGTATATCTCTGCGCTTACGGATGAACTCTGTATATTTCTGCACCATTGCTGGGAATTATATTTGTAGTAATGTCGTTAAAAAATATTAACACTACATCATGATGTTGATGTTAGTGAACTGAGCATAAGCATTCAGTTGCCATTCCTGCGTCTGTGCTATGTGTCCTTCGAGGTTGTATTGGATCTCTCCCGTTTGTATATCACGGGTGTCCATCCTCCTTGTGATTTCTCCCAAGTCCCAACGAGAGGAACTTGAGCGCCACTCGTTGGGGGACGGAGGCATACCGCTTGATCTGGGGGAATAAGTGTTCATGTTCCCCTAGTGTATGCCATGAGGCGCCCGCCATCAGCTCTCGCTGGCACTTTCCCAGACCGAGCCTCCGATGCTGTGGTGTGGAGCTTGGGTCCATCCGAGTGCATCCCCAGTTGGCTTCCAACCAGCCTCGTACATCTGCACAGATGTTGAGGATGTTGAACCTTCTTGATTCATTTCTTGCCATGTTGCGTGTGTCCCTGTACTGATGATACGGATCGAAATTGTTAGAATTGGTATCAAATATACTAGTCCTATTTGGTTATTTGGTTACAGTTGGACTTGGAGTAGTAATATGTGTTAGGGGGTGGAGTCAGAGTCAAACTCTGTAACCCGGCATTTCTCTTAAATAGAGAGGGGGCACCACAATGTAACCGTGGCGACTACAATGTAGCGTAGACATGTAGAAAGAGGATGACGGCATGGCCATGGACTCGTATGAATATCACCATTATTTTTTTTTGAAAGGAGTCACCATTATTAATTTTGATAGATAAATGTCCCTTTTATTTGCTGGAAACTAATTGTTACATCCATAACTAAGAAACCAAAGTCTCTTAATAAATAGATGTTCTATGCACACGTACGCGTGCGCATGCACGAATTATTAAGAGATAATAAAAAAAAAGATACTTGATCGATCATACACAGAATTCTTGAAAGTTAACAATATTATCGTGACTCCATGCATGCAGACGATGATTATTATTATATTTCTATTTCCCTTGTCACTCCTCTGGGAGAGGGCCAAACTTGTGCTGCAGAACCGCGATGAATTCGCTGGAGGTGCAGCCACCAACGCTGACGGTTGATGCACAGTTCTTGTCGGTTTGGTCTGTGCAGATTTTGCCGGCCTTTTCCAGTTTCTCTTCTTTGATGTAACCCCAGTAATTTGGGAAGTGATCTTTCTCACGTACCTCGGTGTAAGCCTGCGACAAGAAAAAAAAGCTTTAATTCAATTCTCTTTTAAGATTTAGATTATTGGTCTATATAAAATAAAACCCCCTCTTTATTAAGCTCGGTTGACCTTATTTAGTTAGTTAATTACTCCCTCAGGTTAAAAGTAATTGTTATTTTGGACATATTAATATTTGATTAGAACAAGATTTTACAAGTGTTTTATTACAATATCAACAATTATTAATGTTGGCATCTTGCGACGATGAGTGGTCATATTTGCTGGTCGTTTTCTTACAGAGTTCTGCGTGGCGCTCCAAGGAAGGGACCATGCGACCATGAAGTCCCGGACCTGGCCGTCGACGTCGCGGCCGCGGAAGACGCGCGCCGCCTCGCAGCCGATCGACTGCGCCGTCGGGTGGGCGTGGAGGAACGCCAGCCACTGGCCGTTCTGGAACGACGCCGGCGGCTGCTCGTGGTAGACGTAGCCGTACCAGTCCATCGACCCGCCCTCCCCGTCGACGAGCTCCAGCGCGGCGCCGGTGGCGTTGTAGACGAGCACCATGGCGGAGACGCCGTCGCCGTAGGAGGCCTTGAGCCCCAGCGCGTGCTGCAGCGCGTCCAGGTTCTTGCCCTCGGCGTGGATGAGGCGCATCGCCTCCCGCGCGCGGTCCACCTGGCTGATGCTCTTCCCGGCGTACCGCGACATCGCCTCCAGCGTCTCGTCGGTGATGGGCACGCCGAATGTGCTCATGCTTTATACTTAGTTACTTTGTAAAGCTAGCT
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| CDS seq | ATGAGCACATTCGGCGTGCCCATCACCGACGAGACGCTGGAGGCGATGTCGCGGTACGCCGGGAAGAGCATCAGCCAGGTGGACCGCGCGCGGGAGGCGATGCGCCTCATCCACGCCGAGGGCAAGAACCTGGACGCGCTGCAGCACGCGCTGGGGCTCAAGGCCTCCTACGGCGACGGCGTCTCCGCCATGGTGCTCGTCTACAACGCCACCGGCGCCGCGCTGGAGCTCGTCGACGGGGAGGGCGGGTCGATGGACTGGTACGGCTACGTCTACCACGAGCAGCCGCCGGCGTCGTTCCAGAACGGCCAGTGGCTGGCGTTCCTCCACGCCCACCCGACGGCGCAGTCGATCGGCTGCGAGGCGGCGCGCGTCTTCCGCGGCCGCGACGTCGACGGCCAGGTCCGGGACTTCATGGTCGCATGGTCCCTTCCTTGGAGCGCCACGCAGAACTCTGCTTACACCGAGGTACGTGAGAAAGATCACTTCCCAAATTACTGGGGTTACATCAAAGAAGAGAAACTGGAGAAGGCCGGCAAAATCTGCACAGACCAAACCGACAAGAACTGTGCATCAACCGTCAGCGTTGGTGGCTGCACCTCCAGCGAATTCATCGCGGTTCTGCAGCACAAGTTTGGCCCTCTCCCGGAGGAGTGA
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| Protein seq | MSTFGVPITDETLEAMSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAALELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQVRDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQHKFGPLPEE |
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| Function | 23 kDa jasmonate-induced protein [UniProtKB/Swiss-Prot:P32024] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0308400 | Os04t0308400-00 | Chr04 | 13934207 | 13937518 | - | irgsp1_rep | ||
| CDS seq | ATGAGCACATTCGGCGTGCCCATCACCGACGAGACGCTGGAGGCGATGTCGCGGTACGCCGGGAAGAGCATCAGCCAGGTGGACCGCGCGCGGGAGGCGATGCGCCTCATCCACGCCGAGGGCAAGAACCTGGACGCGCTGCAGCACGCGCTGGGGCTCAAGGCCTCCTACGGCGACGGCGTCTCCGCCATGGTGCTCGTCTACAACGCCACCGGCGCCGCGCTGGAGCTCGTCGACGGGGAGGGCGGGTCGATGGACTGGTACGGCTACGTCTACCACGAGCAGCCGCCGGCGTCGTTCCAGAACGGCCAGTGGCTGGCGTTCCTCCACGCCCACCCGACGGCGCAGTCGATCGGCTGCGAGGCGGCGCGCGTCTTCCGCGGCCGCGACGTCGACGGCCAGGTCCGGGACTTCATGGTCGCATGGTCCCTTCCTTGGAGCGCCACGCAGAACTCTGCTTACACCGAGGTACGTGAGAAAGATCACTTCCCAAATTACTGGGGTTACATCAAAGAAGAGAAACTGGAGAAGGCCGGCAAAATCTGCACAGACCAAACCGACAAGAACTGTGCATCAACCGTCAGCGTTGGTGGCTGCACCTCCAGCGAATTCATCGCGGTTCTGCAGCACAAGTTTGGCCCTCTCCCGGAGGAGTGA
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| Protein seq | MSTFGVPITDETLEAMSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAALELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQVRDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQHKFGPLPEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0310200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g24319 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0310200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007500 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008050 | RBH | 0.0 | 3.097714 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007910 | RBH | 0.0 | 14.705109 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007600 | SBH | 0.0 | 1.302342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007780 | RBH | 0.000000 | 18.323717 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227400 | SBH | 0 | 0.390793 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007510 | SBH | 0.000000 | 2.338950 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227900 | SBH | 0.0459495 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007330 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007580 | SBH | 0.0 | 8.782088 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007660 | SBH | 0.0 | 93.083939 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007900 | SBH | 0.000000 | 15.263098 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007530 | RBH | 0.0 | 50.860092 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007640 | RBH | 0.0 | 4.200902 | 0.0 |
