Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0001400 | OGI:01107310 | 5/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:1768278-1772708 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtttttggtggagcagaacccctccggtggaaagggcataatgtcgtcggcgaggtctgttgcgtcgccttccgcagcgcaagtaggcggaggctcgtcggtgcgtgatgtcgagcagcaaaagtcggcggcggccgtaggcgcgtcgtcgccagtgagtagtagcaagcagcacaatctggcgaaggaagaaaatggaaccattacagctaatggtgacaagcagcagaagcctgccgcagataggtacacatagaagtttagttttaggttatgttctgttgaaaatttttctcttgtttgtttgtttggctctgactggttattgcgttatttggtcatcaggaatggttttgtgcgttgcatggatactgctgcccggagtgaagtgatgaaccactccctccagaaatatgtcattcatttggatggatgtcatcctctttccatgagaaatcctaggaagagatgtgcttggtgctcactccgtgatattcgcgcggcttgcgacgtgaatttcagaagcaacgaaacaacccggggcaacagtaatggttgcgaacatgtgtccaaggaaaatatgtagccaatagtgtgatgatcaggaaaattgtaataagggcttgctttctgcacggccgtagattagtcgtacgaactgtctctagttttgtatggtatttttgtatgagaaaaaagcgagtagtatctgagttgagaaatctgtatcttctgctatttgggaagtgaaataaaattgagatgttatcctttcatttatctatttaagttgtgtgtactgcaaactccctgttgtcatcgtgaatgcaatccttcaccaagatgaagttcttcgagcagaatattgtacaagaatggagcagagatttcgaattggtttctgtgagtgtagcgttgcgtattcggaatatttgttatagatgctatttttgtagcggtatggtttcatcagaattcgttaatgttgctagtggctgactttccagagtccaataacatgcttcgcacgtaggagccttgattttcggggaggttgttgagcagctgggggaaaataaaccgtaattatttgtcagtatatatccaaccagctgaaaaaaaaggacaccctagagcaaattctgtttgccaaaaggggtagctaccagagtccgtgctggacagaaacaatattcacggagataggtatggaggaagaaggctggccggagaaaggtggcgaggatcatagtggacaacccatggacgtagttccgttggaaaggtattttttatgtcagtgtgattgtagtgtacaattcccctttctgcattgtttcctgatttctcgttttttgatcctaggatcgtggttgagggggaggaagatagtgatctgctgcctatttcactctctgacccagccattctgttgccgaaaattgggcagaccttcaatgaggactctaatggctatgcgttctacaatctgtacgctaggttcactggttttggtataaggagatccaagaacagatacaaagatgaacgcatgaagtccatgcaagagttctgctgcattcgtgaggtaaaaatctttagtgtgttcTtttttttttgaaaaccatggtttcgtattctcgtaggattggcaagtttctacagtgtgatgcgtaggatcatcatttgataggttttacgtagtaaggtgttcctgtaatttatgcagggtagagataattccgtcactggtccgccgaccaggataggctgcaaggctatggtcaggttaaatcgttcttctgaaagtcaaaagtggagagtttctgcattcattagtaagcataaccatgaaatgaaacgggacctgcagcatactaagcacttcaggtctcataatttcattgatgaagggacaaagaggaacataaaggaaatggtagataatgggatgacacctacagctatgtatggattactttcaggtatgcacggcgggccgtccttaacccctttacaaggagggctgtgacaagaatggcgtatgccatcagaagggatgagtgtagcaatgatgtgcagaagacactgaatttttttagggaaatgcaatgccgtagtaagaatttcttttacaccatacagattgatggtgcttcaaggattaaaaatatattttggtgtcattcactgtccagattaagttttgaccattttggggatgcaatcacttttgatactacatatcagactaataggtacaacatgccatttgggatttttgtcggtgtaaataaccattttcaaacagcaatttttggttgcgctttgttgagggaggagacaatcgaacaatcgaagcattcaagtggcttttccaaacatttactgatgcaatgcatgggaagaggcctgcaacaattttaacaggtatatgtttttttggatggatcagtggtgtgtttaatgatatgtcttctgtttttaatctcgaatggttgtgaacttattttttagataactgtcatcaaatggaggtggcgatcaaagcggtttggcctgaaactactcatagagtttgcaaatggcatattctgaagagtgctaaggagaacttggggaacatttacagtaaaaaaagcagtttcaaacaggagttccaccgggtgttaaatgaaccccaaacagaggcagagtttgagaaggcatggtcagattgaatggagcagtacaatctcgagtctagcgtgtatttgcgcaggatgtgggacatgaagaaaaaatgggctccagcttacttcagggaattcttttttgctaggatgtcaaccacacaaagaagtgagagcatgaatcatgttctgaagaagtatgtaaaaccatcctcttcgctacatggatttgcaaagaggtatgagaatttctacaatgataggattgaagcggaagacggtgaggagcatgatacatacaatgtatgttttttttaatgatttccgtatgatatatcggtgtatggtactttctgctgaacatgttataatatgcttgtcatttctctggaactttaggagaaggtttccacattaactagcttgcccattgagaaacatgcttctcgggtgtacactaggggtgcattttccaggttcaaggaacagttcaagctaagcttttcatttatggtttatcaaacttcagatcagcatgttctgcagctagtccatataggtgacgacaccttgcaaagttggggcagcaaagaatttaaggttcaggttgacctgactgaacaagatctgtcatgtggatgcaagctttttgaatacttgggaattatatgctcccatattatcagagtaagtttgaatattaagcagttctcataacgctgttgtgtttttgtgtgttaatgcatagtgtttttgcaggttatggtacagtatggtttcacggaaataccgaagaagtatatcctgaagaggtggacaaaagatgctagagattcaatcccaaagcacttggaggagttgtatttgaaggataaggaggcggcatcatcgagaacttattggaacaccctcctgcacaagtctacacttgatatggttagacttggtggtactagttcagaaacatatgagaagacagtggaagcgttgacaaagctgattggagaacttcaggtcatgtgtacttcgcaagttgtaaacaacaaggaaattcattgcggagatagaacaattgggaagaaacctactggtgtgcaattcgatgatagtgtagacagttctgactcggagcatggaatgcctgatgacttttgtgtagccgatgaggacggcattggacaggatgtttctgctggtgaggattcagttgatgtggacatgactgatgtcaacgaagaagacatactccctcctgaggttagaagaagtcgtggacgaccgaggagtaccagactgatgtcgaagggagagacatctagcaaagcaaagaagaaggctagtgagagtacctccaaggacgagtcgaagaatcacgccaaaggaaaaaaagagtcaacgaagcagattaggtactgcaagcaatgtggtggtcatggccactataagagtacatgtggtcagaaatctagttatgagaggaagaagtgagtgtaattattctgttcaatgttctgcagggttggtgtcagcatttcgtttagcataaaatggaacttttattattattaaattttgtcagcagaacatgtagtatattttgaatatttacatttggcaaacattgtaggaaatttgcgaacactagttttgcattttttttttctattttctgttgtgcctcagagtttgtggtgtagttgtagtctttggaagcatcgtattggagcagaacatagctaattgtttctgctggaggtag
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| CDS seq | atgtcgtcggcgaggtctgttgcgtcgccttccgcagcgcaagtaggcggaggctcgtcggtgcgtgatgtcgagcagcaaaagtcggcggcggccgtaggcgcgtcgtcgccagtgagtagtagcaagcagcacaatctggcgaaggaagaaaatggaaccattacagctaatggtgacaagcagcagaagcctgccgcagataggaatggttttgtgcgttgcatggatactgctgcccggagtgaagtgatgaaccactccctccagaaatatgtcattcatttggatggatgtcatcctctttccatgagaaatcctaggaagagatgtgcttggtgctcactccgtgatattcgcgcggcttgcgacgtgaatttcagaagcaacgaaacaacccggggcaacagtaatggttgcgaacatctgaaaaaaaaggacaccctagagcaaattctgtttgccaaaaggggtagctaccagagtccgtgctggacagaaacaatattcacggagataggtatggaggaagaaggctggccggagaaaggtggcgaggatcatagtggacaacccatggacgtagttccgttggaaaggatcgtggttgagggggaggaagatagtgatctgctgcctatttcactctctgacccagccattctgttgccgaaaattgggcagaccttcaatgaggactctaatggctatgcgttctacaatctgtacgctaggttcactggttttggtataaggagatccaagaacagatacaaagatgaacgcatgaagtccatgcaagagttctgctgcattcgtgagggtagagataattccgtcactggtccgccgaccaggataggctgcaaggctatggtcaggttaaatcgttcttctgaaagtcaaaagtggagagtttctgcattcattagtaagcataaccatgaaatgaaacgggacctgcagcatactaagcacttcaggtctcataatttcattgatgaagggacaaagaggaacataaaggaaatggtagataatgggatgacacctacagctatgtatgcacggcgggccgtccttaacccctttacaaggagggctgtgacaagaatggcgtatgccatcagaagggatgacttgcccattgagaaacatgcttctcgggtgtacactaggggtgcattttccaggttcaaggaacagttcaagctaagcttttcatttatggtttatcaaacttcagatcagcatgttctgcagctagtccatataggtgacgacaccttgcaaagttggggcagcaaagaatttaaggttcaggttgacctgactgaacaagatctgtcatgtggatgcaagctttttgaatacttgggaattatatgctcccatattatcagagttatggtacagtatggtttcacggaaataccgaagaagtatatcctgaagaggtggacaaaagatgctagagattcaatcccaaagcacttggaggagttgtatttgaaggataaggaggcggcatcatcgagaacttattggaacaccctcctgcacaagtctacacttgatatggttagacttggtggtactagttcagaaacatatgagaagacagtggaagcgttgacaaagctgattggagaacttcaggtcatgtgtacttcgcaagttgtaaacaacaaggaaattcattgcggagatagaacaattgggaagaaacctactggtgtgcaattcgatgatagtgtagacagttctgactcggagcatggaatgcctgatgacttttgtgtagccgatgaggacggcattggacaggatgtttctgctggtgaggattcagttgatgtggacatgactgatgtcaacgaagaagacatactccctcctgaggttagaagaagtcgtggacgaccgaggagtaccagactgatgtcgaagggagagacatctagcaaagcaaagaagaaggctagtgagagtacctccaaggacgagtcgaagaatcacgccaaaggaaaaaaagagtcaacgaagcagattaggtactgcaagcaatgtggtggtcatggccactataagagtacatgtggtcagaaatctagttatgagaggaagaaagtttgtggtgtagttgtagtctttggaagcatcgtattggagcagaacatagctaattgtttctgctggaggtag
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| Protein seq | MSSARSVASPSAAQVGGGSSVRDVEQQKSAAAVGASSPVSSSKQHNLAKEENGTITANGDKQQKPAADRNGFVRCMDTAARSEVMNHSLQKYVIHLDGCHPLSMRNPRKRCAWCSLRDIRAACDVNFRSNETTRGNSNGCEHLKKKDTLEQILFAKRGSYQSPCWTETIFTEIGMEEEGWPEKGGEDHSGQPMDVVPLERIVVEGEEDSDLLPISLSDPAILLPKIGQTFNEDSNGYAFYNLYARFTGFGIRRSKNRYKDERMKSMQEFCCIREGRDNSVTGPPTRIGCKAMVRLNRSSESQKWRVSAFISKHNHEMKRDLQHTKHFRSHNFIDEGTKRNIKEMVDNGMTPTAMYARRAVLNPFTRRAVTRMAYAIRRDDLPIEKHASRVYTRGAFSRFKEQFKLSFSFMVYQTSDQHVLQLVHIGDDTLQSWGSKEFKVQVDLTEQDLSCGCKLFEYLGIICSHIIRVMVQYGFTEIPKKYILKRWTKDARDSIPKHLEELYLKDKEAASSRTYWNTLLHKSTLDMVRLGGTSSETYEKTVEALTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTGVQFDDSVDSSDSEHGMPDDFCVADEDGIGQDVSAGEDSVDVDMTDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKASESTSKDESKNHAKGKKESTKQIRYCKQCGGHGHYKSTCGQKSSYERKKVCGVVVVFGSIVLEQNIANCFCWR |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0001400 | OsKeNa_04g0001400.01 | Chr04 | 1768278 | 1772708 | + | NAM | ||
| CDS seq | atgtcgtcggcgaggtctgttgcgtcgccttccgcagcgcaagtaggcggaggctcgtcggtgcgtgatgtcgagcagcaaaagtcggcggcggccgtaggcgcgtcgtcgccagtgagtagtagcaagcagcacaatctggcgaaggaagaaaatggaaccattacagctaatggtgacaagcagcagaagcctgccgcagataggaatggttttgtgcgttgcatggatactgctgcccggagtgaagtgatgaaccactccctccagaaatatgtcattcatttggatggatgtcatcctctttccatgagaaatcctaggaagagatgtgcttggtgctcactccgtgatattcgcgcggcttgcgacgtgaatttcagaagcaacgaaacaacccggggcaacagtaatggttgcgaacatctgaaaaaaaaggacaccctagagcaaattctgtttgccaaaaggggtagctaccagagtccgtgctggacagaaacaatattcacggagataggtatggaggaagaaggctggccggagaaaggtggcgaggatcatagtggacaacccatggacgtagttccgttggaaaggatcgtggttgagggggaggaagatagtgatctgctgcctatttcactctctgacccagccattctgttgccgaaaattgggcagaccttcaatgaggactctaatggctatgcgttctacaatctgtacgctaggttcactggttttggtataaggagatccaagaacagatacaaagatgaacgcatgaagtccatgcaagagttctgctgcattcgtgagggtagagataattccgtcactggtccgccgaccaggataggctgcaaggctatggtcaggttaaatcgttcttctgaaagtcaaaagtggagagtttctgcattcattagtaagcataaccatgaaatgaaacgggacctgcagcatactaagcacttcaggtctcataatttcattgatgaagggacaaagaggaacataaaggaaatggtagataatgggatgacacctacagctatgtatgcacggcgggccgtccttaacccctttacaaggagggctgtgacaagaatggcgtatgccatcagaagggatgacttgcccattgagaaacatgcttctcgggtgtacactaggggtgcattttccaggttcaaggaacagttcaagctaagcttttcatttatggtttatcaaacttcagatcagcatgttctgcagctagtccatataggtgacgacaccttgcaaagttggggcagcaaagaatttaaggttcaggttgacctgactgaacaagatctgtcatgtggatgcaagctttttgaatacttgggaattatatgctcccatattatcagagttatggtacagtatggtttcacggaaataccgaagaagtatatcctgaagaggtggacaaaagatgctagagattcaatcccaaagcacttggaggagttgtatttgaaggataaggaggcggcatcatcgagaacttattggaacaccctcctgcacaagtctacacttgatatggttagacttggtggtactagttcagaaacatatgagaagacagtggaagcgttgacaaagctgattggagaacttcaggtcatgtgtacttcgcaagttgtaaacaacaaggaaattcattgcggagatagaacaattgggaagaaacctactggtgtgcaattcgatgatagtgtagacagttctgactcggagcatggaatgcctgatgacttttgtgtagccgatgaggacggcattggacaggatgtttctgctggtgaggattcagttgatgtggacatgactgatgtcaacgaagaagacatactccctcctgaggttagaagaagtcgtggacgaccgaggagtaccagactgatgtcgaagggagagacatctagcaaagcaaagaagaaggctagtgagagtacctccaaggacgagtcgaagaatcacgccaaaggaaaaaaagagtcaacgaagcagattaggtactgcaagcaatgtggtggtcatggccactataagagtacatgtggtcagaaatctagttatgagaggaagaaagtttgtggtgtagttgtagtctttggaagcatcgtattggagcagaacatagctaattgtttctgctggaggtag
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| Protein seq | MSSARSVASPSAAQVGGGSSVRDVEQQKSAAAVGASSPVSSSKQHNLAKEENGTITANGDKQQKPAADRNGFVRCMDTAARSEVMNHSLQKYVIHLDGCHPLSMRNPRKRCAWCSLRDIRAACDVNFRSNETTRGNSNGCEHLKKKDTLEQILFAKRGSYQSPCWTETIFTEIGMEEEGWPEKGGEDHSGQPMDVVPLERIVVEGEEDSDLLPISLSDPAILLPKIGQTFNEDSNGYAFYNLYARFTGFGIRRSKNRYKDERMKSMQEFCCIREGRDNSVTGPPTRIGCKAMVRLNRSSESQKWRVSAFISKHNHEMKRDLQHTKHFRSHNFIDEGTKRNIKEMVDNGMTPTAMYARRAVLNPFTRRAVTRMAYAIRRDDLPIEKHASRVYTRGAFSRFKEQFKLSFSFMVYQTSDQHVLQLVHIGDDTLQSWGSKEFKVQVDLTEQDLSCGCKLFEYLGIICSHIIRVMVQYGFTEIPKKYILKRWTKDARDSIPKHLEELYLKDKEAASSRTYWNTLLHKSTLDMVRLGGTSSETYEKTVEALTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTGVQFDDSVDSSDSEHGMPDDFCVADEDGIGQDVSAGEDSVDVDMTDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKASESTSKDESKNHAKGKKESTKQIRYCKQCGGHGHYKSTCGQKSSYERKKVCGVVVVFGSIVLEQNIANCFCWR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g04400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0354200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009420 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018780 | SBH | 0.0 | 0.0 | 0.527337 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0026800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025070 | SBH | 0.0 | 0.0 | 0.096441 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025420 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025320 | SBH | 0.0 | 0.0 | 0.091510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018670 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020480 | SBH | 0.0 | 0.0 | 0.0 |
