Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g04400 | OGI:01107310 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:2092752-2096873 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGTCGGCGAGGTCTGTTGCGTCGCCTTCCGCGGCGCAAGTAGGCGGAGGCTCGTCGGCGCGTGATGTCGAGCAGCAGAAGTCGGTGGTGGCCGTAGGCGCGTCGTCGCCAGTGAGTAGTAGCAAGCAGCACAATCTGGCGAAGGAAGAAAATGGAACCATTACAGCTAATGGTGACAAGCAGCAGAAGCCTGCCGCAGATAGGTACACATAGAAGTTTAGTTTTAGGTTATGTTCTGTTGAAAATTTTTCTCTTGTTTGTTTGTTTGGCTCTGACTGGTTATTGCGTTATTTGGTCATCAGGAATGGTTTTGTGCGTTGCATGGATACTGCTGCCCGGAGTGAAGTGATGAACCACTCCCTCCAGAAATATGTCATTCATTTGGATGGATGTCATCCTCTTTCCATGAGGAATCCTAGGAAGAGATGTGCTTGGTGCTCACTCCGTGATATTCGCGTGGCTTGCGACGTGAATTTCAGAAGCAACGAAACAACCCGGGGCAACAGTAATAGTTGCGAACATGTGTCCAAGGAAAATATGTAGCCAATAGTGTGATGATCAGGAAAATTGTAATAAGGGCTTGCTTTCTGCACGGCCGTAGATTAGTCGTACGAACTGTCTCTAGTTTTGTATGGTATATTCTATGAGAAAAAAGCGAGTAGTATCTGAGTTGAGAAATCTGTATCTTCTGCTATTTGGGAAGTGAAATAAAATTGAGATGTTATCCTTTCATTTATCTATTTAAGTTGTGTGTACTGCAAACTCCCTGTTGTCATCGTGAATGCAATCCTTCACCAAGATGAAGTTCTTCGAGCAGAATATTGTACAAGAATGGAGCAGAGATTTCGAATTGGTTTCTGTGAGTGTAGCGTTGCGTATTCGGAATATTTGTTATAGATGCTATTTTTGTGGCGGTATGGTTTCATCAGAATTCGTTAATGTTGCTAGTGGCTGACTTTCCAGAGTCCAATAACATGCTTCGCACGTAGGAGCCTTGATTTTCGGGGAGGTTGTTGAGCAGCTGGTGGAAAATAAACCGTAATTATTTGTCAGTATATATCCAACCAGCTGAAAAAAAAGGACACCCTAGAGCAAATTCTGTTTGCCAAAAGGGGTAGCTACCAGAGTCCGTGCTGGACAGAAACAATATTCACGGAGATAGGTATGGAGGAAGAAGGCTGGCCGGAGAAAGGTGGCGAGGATCATAGTGGACAACCCATGGACGTAGTTCCGTTGGAAAGGTATTTTTTTATGTCAGTGTGATTGTAGTGTACAATTCCCCTTTCTGCATTGTTTCCTGATTTCTCGTTTTTTGATCCTAGGATCGTGGTTGAGGGGGAGGAAGATAGTGATCTGCTGCCTATTTCACTCTCTGACCCAGCCATTCTGTTGCCGGAAATTGGGCAGACCTTCAATGAGGACTCTAATGGCTATGCGTTCTACAATCTGTACGCTAGGTTCACTGGTTTTGGTATAAGGAGATCCAAGAACAGATACAAAGATGAAGGCGTGAAGTCCATGCAAGAGTTCTGCTGCATTCGTGAGGTAAAAATCTTTAGTGTGTTCTTTTTTTTTTTGAAAACCATGGTTTCGTATTCTCGTAGGATTGGCAAGTTTCTACAGTGTGATGCGTAGGATCATCATTCGATAGGTTTTACGTAGTAAGGTGTTCCTGTAATTTATGCAGGGTAGAGATAATTCTGTCACTGGTCCGCCGACCAGGATAGGCTGCAAGGCTATGGTCAGGTTAAATCGTTCTTCTGAAAGTCAAAAGTGGAGAGTTTCTGCATTCATTAGTGAGCATAACCATGAAATGAAACGGGACCTGCAGCATACTAAGCACTTCAGGTCTCATAATTTCATTGATGAAGGGACAAAGAGGAACATAAAGGAAATGGTAGATAATGGGATGACACCTACAGCTATGTATGGATTACTTTCAGGTATGCTCGGCGGGCCGTCCTTAACCCCCTTTACAAGGAGGGCTGTGACAAGAATGGCGTATGCCATCAGAAGGGATGAGTGTAGCAATCATGTGCAGAAGACACTGAATTTTTTTAGGGAAATGCAATGCCGTAGTAAGAATTTCTTTTACACCATACAGATTGATGGTGCTTCAAGGATTAAAAATATATTTTGGTGTCATTCACTGTCCAGATTAAGTTTTGAACATTTTGGGGATGCAATCACTTTTGATACTACATATCAGACTAATAGGTACAACATGCCATTTGGGATTTTTGTCGGTGTAAATAACCATTTTCAAACAGCAATTTTTGGTTGCGCTTTGTTGAGGGAGGAGACAATCGAACAATCGAAGCATTCAAGTGGCTTTTCCAAACATTTACTGATGCAATGCATGGGAAGAGGCCTGCAACAATTTTAACAGGTATATGTTTTTTTGGATGGATCAGTGGTGTGTTTAATGATATGTCTTCTGTTTTTAATCTCGAATGGTTGTGAACTTATTTTTTAGATAACTGTCATCAAATGGAGGTGGCGATCAAAGCGGTTTGGCCTGAAACTACTCATAGAGTTTGCAAATGGCATATTCTGAAGAGTGCTAAGGAGAACTTGGGGAACATTTACAGTAAAAGAAGCAGTTTCAAACAGGAGTTCCACCGGGTGTTAAATGAACCCCAAACAGAGGCAGAGTTTGAGAAGGCATGGTCAGATTGAATGGAGCAGTACAATCTCGAGTCTAGCGTGTATTTGCGCAGGATGTGGGACATGAAGAAAAAATGGGCTCCAGCTTACTTCAGGGAATTCTTTTTTGCTAGGATGTCAACCACACAAAGAAGTGAGAGCATGAATCATGTTCTGAAGAAGTATGAAAAACCATCCTCTTCGCTACATGGATTTGCAAAGAGGTATGAGAATTTCTACAATGATAGGATTGAAGCGGAAGACGGTGAGGAGCACGATACATACAATGTATGTTTTTTTTAATGATTTCCGTATGATATATCGGTGTATGGTACTTTCTGCTGAACATGTTATAATATGCTTGTCATTTCTCTGGAACTTTAGGAGAAGGTTTCCACATTAACTAGCTTGCCCATTGAGAAACATGCTTCTCGGGTGTACACTAGGGGTGCATTTTCTAGGTTCAAGGAACAGTTCAAGCTAAGCTTTTCATTTATGGTTTATCAAACTTCGGATCAGCATGTTCTGCAGCTAGTCCATATAGGTGACGACACCTTGTAAAGTTGGGGCAGCAAAGAATTTAAGGTTCAGGTTGACCTGACTGAACAAGATCTGTCATGTGGATGCAAGCTTTTTGAATACTTGGGAATTATATGCTCCCATATTATCAGAGTAAGTTTGAATATTAAGCAGTTCTCATAACGCTGTTGTGTTTTTGTGTGTTAATGCATAGTGTTTTTGCAGGTTATGGTATAGTATGGTTTCACGGAAATACCGAAGAAGTATATCCTGAAGAGGTGGACAAAAGATGCTAGAGATTCAATCCCAAAGCACTTGGAGGAGTCATACTTGAAGGATAAGGAGGCGGCATCATCGAGAACTTATCGGAACACCCTCCTGCACAAGTCTGCACTTGATATGGTTAGACTTGGTGGTACTAGTTCAGAAACATATGAGAAGACATTGGAAGTGTTGACAAAGCTGATTGGAGAACTTCAGGTCATGTGTACTTCGCAAGTTGTAAACAACAAGGAAATTCATTGCGGAGATAGAACAATTGGGAAGAAACCTACTGGTGTGCAATTGGATGATAGTGTAGACAGTTCTGACTCGGAGCATGGAATGCCTGATGACTTTTGTGTAGCCGATGAGGACGGCATTGGACAGGATGTTTCTGCTGGTGAGGATTCAGTTGATGTGGACATGACTGATGTCAACGAAGAAGACATACTCCCTCCTGAGGTTAGAAGAAGTCGTGGACGACCGAGGAGTACCAGACTGATGTCGAAGGGAGAGACATCTAGCAAAGCAAAGAAGAAGGCTAGTGAGAGTACCTCCAAGGACGAGTCGAAGAATCACGCCAAAGGAAAAAAAGAGTCAACGAAGCAGATTAGGTACTGCAAGCAATGTGGTGGTCATGGCCACTATAAGATTACATGTGGTCAGAAATCTAGTTATGAGAGGAAGAAGTGA
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| CDS seq | ATGTCGTCGGCGAGGTCTGTTGCGTCGCCTTCCGCGGCGCAAGTAGGCGGAGGCTCGTCGGCGCGTGATGTCGAGCAGCAGAAGTCGGTGGTGGCCGTAGGCGCGTCGTCGCCAGTGAGTAGTAGCAAGCAGCACAATCTGGCGAAGGAAGAAAATGGAACCATTACAGCTAATGGTGACAAGCAGCAGAAGCCTGCCGCAGATAGGGGTAGCTACCAGAGTCCGTGCTGGACAGAAACAATATTCACGGAGATAGGTATGGAGGAAGAAGGCTGGCCGGAGAAAGGTGGCGAGGATCATAGTGGACAACCCATGGACGTAGTTCCGTTGGAAAGGATCGTGGTTGAGGGGGAGGAAGATAGTGATCTGCTGCCTATTTCACTCTCTGACCCAGCCATTCTGTTGCCGGAAATTGGGCAGACCTTCAATGAGGACTCTAATGGCTATGCGTTCTACAATCTGTACGCTAGGTTCACTGGTTTTGGTATAAGGAGATCCAAGAACAGATACAAAGATGAAGGCGTGAAGTCCATGCAAGAGTTCTGCTGCATTCGTGAGGGTAGAGATAATTCTGTCACTGGTCCGCCGACCAGGATAGGCTGCAAGGCTATGGTCAGGTTAAATCGTTCTTCTGAAAGTCAAAAGTGGAGAGTTTCTGCATTCATTAGTGAGCATAACCATGAAATGAAACGGGACCTGCAGCATACTAAGCACTTCAGGTCTCATAATTTCATTGATGAAGGGACAAAGAGGAACATAAAGGAAATGGTAGATAATGGGATGACACCTACAGCTATGTATGGATTACTTTCAGATAACTGTCATCAAATGGAGGTGGCGATCAAAGCGGTTTGGCCTGAAACTACTCATAGAGTTTGCAAATGGCATATTCTGAAGAGTGCTAAGGAGAACTTGGGGAACATTTACAGTAAAAGAAGCAGTTTCAAACAGGAGTTCCACCGGGTGTTAAATGAACCCCAAACAGAGGCAGAGTTTGAGAAGGCATGGATGTGGGACATGAAGAAAAAATGGGCTCCAGCTTACTTCAGGGAATTCTTTTTTGCTAGGATGTCAACCACACAAAGAAGTGAGAGCATGAATCATGTTCTGAAGAAGTATGAAAAACCATCCTCTTCGCTACATGGATTTGCAAAGAGGTATGAGAATTTCTACAATGATAGGATTGAAGCGGAAGACGGTGAGGAGCACGATACATACAATGAGAAGGTTTCCACATTAACTAGCTTGCCCATTGAGAAACATGCTTCTCGGGTGTACACTAGGGGTGCATTTTCTAGGTTCAAGGAACAGTTCAAGCTAAGCTTTTCATTTATGTATGGTTTCACGGAAATACCGAAGAAGTATATCCTGAAGAGGTGGACAAAAGATGCTAGAGATTCAATCCCAAAGCACTTGGAGGAGTCATACTTGAAGGATAAGGAGGCGGCATCATCGAGAACTTATCGGAACACCCTCCTGCACAAGTCTGCACTTGATATGGTTAGACTTGGTGGTACTAGTTCAGAAACATATGAGAAGACATTGGAAGTGTTGACAAAGCTGATTGGAGAACTTCAGGTCATGTGTACTTCGCAAGTTGTAAACAACAAGGAAATTCATTGCGGAGATAGAACAATTGGGAAGAAACCTACTGGTGTGCAATTGGATGATAGTGTAGACAGTTCTGACTCGGAGCATGGAATGCCTGATGACTTTTGTGTAGCCGATGAGGACGGCATTGGACAGGATGTTTCTGCTGGTGAGGATTCAGTTGATGTGGACATGACTGATGTCAACGAAGAAGACATACTCCCTCCTGAGGTTAGAAGAAGTCGTGGACGACCGAGGAGTACCAGACTGATGTCGAAGGGAGAGACATCTAGCAAAGCAAAGAAGAAGGCTAGTGAGAGTACCTCCAAGGACGAGTCGAAGAATCACGCCAAAGGAAAAAAAGAGTCAACGAAGCAGATTAGGTACTGCAAGCAATGTGGTGGTCATGGCCACTATAAGATTACATGTGGTCAGAAATCTAGTTATGAGAGGAAGAAGTGA
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| Protein seq | MSSARSVASPSAAQVGGGSSARDVEQQKSVVAVGASSPVSSSKQHNLAKEENGTITANGDKQQKPAADRGSYQSPCWTETIFTEIGMEEEGWPEKGGEDHSGQPMDVVPLERIVVEGEEDSDLLPISLSDPAILLPEIGQTFNEDSNGYAFYNLYARFTGFGIRRSKNRYKDEGVKSMQEFCCIREGRDNSVTGPPTRIGCKAMVRLNRSSESQKWRVSAFISEHNHEMKRDLQHTKHFRSHNFIDEGTKRNIKEMVDNGMTPTAMYGLLSDNCHQMEVAIKAVWPETTHRVCKWHILKSAKENLGNIYSKRSSFKQEFHRVLNEPQTEAEFEKAWMWDMKKKWAPAYFREFFFARMSTTQRSESMNHVLKKYEKPSSSLHGFAKRYENFYNDRIEAEDGEEHDTYNEKVSTLTSLPIEKHASRVYTRGAFSRFKEQFKLSFSFMYGFTEIPKKYILKRWTKDARDSIPKHLEESYLKDKEAASSRTYRNTLLHKSALDMVRLGGTSSETYEKTLEVLTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTGVQLDDSVDSSDSEHGMPDDFCVADEDGIGQDVSAGEDSVDVDMTDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKASESTSKDESKNHAKGKKESTKQIRYCKQCGGHGHYKITCGQKSSYERKK |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g04400 | LOC_Os04g04400.1 | Chr04 | 2092752 | 2096873 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTCGGCGAGGTCTGTTGCGTCGCCTTCCGCGGCGCAAGTAGGCGGAGGCTCGTCGGCGCGTGATGTCGAGCAGCAGAAGTCGGTGGTGGCCGTAGGCGCGTCGTCGCCAGTGAGTAGTAGCAAGCAGCACAATCTGGCGAAGGAAGAAAATGGAACCATTACAGCTAATGGTGACAAGCAGCAGAAGCCTGCCGCAGATAGGGGTAGCTACCAGAGTCCGTGCTGGACAGAAACAATATTCACGGAGATAGGTATGGAGGAAGAAGGCTGGCCGGAGAAAGGTGGCGAGGATCATAGTGGACAACCCATGGACGTAGTTCCGTTGGAAAGGATCGTGGTTGAGGGGGAGGAAGATAGTGATCTGCTGCCTATTTCACTCTCTGACCCAGCCATTCTGTTGCCGGAAATTGGGCAGACCTTCAATGAGGACTCTAATGGCTATGCGTTCTACAATCTGTACGCTAGGTTCACTGGTTTTGGTATAAGGAGATCCAAGAACAGATACAAAGATGAAGGCGTGAAGTCCATGCAAGAGTTCTGCTGCATTCGTGAGGGTAGAGATAATTCTGTCACTGGTCCGCCGACCAGGATAGGCTGCAAGGCTATGGTCAGGTTAAATCGTTCTTCTGAAAGTCAAAAGTGGAGAGTTTCTGCATTCATTAGTGAGCATAACCATGAAATGAAACGGGACCTGCAGCATACTAAGCACTTCAGGTCTCATAATTTCATTGATGAAGGGACAAAGAGGAACATAAAGGAAATGGTAGATAATGGGATGACACCTACAGCTATGTATGGATTACTTTCAGATAACTGTCATCAAATGGAGGTGGCGATCAAAGCGGTTTGGCCTGAAACTACTCATAGAGTTTGCAAATGGCATATTCTGAAGAGTGCTAAGGAGAACTTGGGGAACATTTACAGTAAAAGAAGCAGTTTCAAACAGGAGTTCCACCGGGTGTTAAATGAACCCCAAACAGAGGCAGAGTTTGAGAAGGCATGGATGTGGGACATGAAGAAAAAATGGGCTCCAGCTTACTTCAGGGAATTCTTTTTTGCTAGGATGTCAACCACACAAAGAAGTGAGAGCATGAATCATGTTCTGAAGAAGTATGAAAAACCATCCTCTTCGCTACATGGATTTGCAAAGAGGTATGAGAATTTCTACAATGATAGGATTGAAGCGGAAGACGGTGAGGAGCACGATACATACAATGAGAAGGTTTCCACATTAACTAGCTTGCCCATTGAGAAACATGCTTCTCGGGTGTACACTAGGGGTGCATTTTCTAGGTTCAAGGAACAGTTCAAGCTAAGCTTTTCATTTATGTATGGTTTCACGGAAATACCGAAGAAGTATATCCTGAAGAGGTGGACAAAAGATGCTAGAGATTCAATCCCAAAGCACTTGGAGGAGTCATACTTGAAGGATAAGGAGGCGGCATCATCGAGAACTTATCGGAACACCCTCCTGCACAAGTCTGCACTTGATATGGTTAGACTTGGTGGTACTAGTTCAGAAACATATGAGAAGACATTGGAAGTGTTGACAAAGCTGATTGGAGAACTTCAGGTCATGTGTACTTCGCAAGTTGTAAACAACAAGGAAATTCATTGCGGAGATAGAACAATTGGGAAGAAACCTACTGGTGTGCAATTGGATGATAGTGTAGACAGTTCTGACTCGGAGCATGGAATGCCTGATGACTTTTGTGTAGCCGATGAGGACGGCATTGGACAGGATGTTTCTGCTGGTGAGGATTCAGTTGATGTGGACATGACTGATGTCAACGAAGAAGACATACTCCCTCCTGAGGTTAGAAGAAGTCGTGGACGACCGAGGAGTACCAGACTGATGTCGAAGGGAGAGACATCTAGCAAAGCAAAGAAGAAGGCTAGTGAGAGTACCTCCAAGGACGAGTCGAAGAATCACGCCAAAGGAAAAAAAGAGTCAACGAAGCAGATTAGGTACTGCAAGCAATGTGGTGGTCATGGCCACTATAAGATTACATGTGGTCAGAAATCTAGTTATGAGAGGAAGAAGTGA
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| Protein seq | MSSARSVASPSAAQVGGGSSARDVEQQKSVVAVGASSPVSSSKQHNLAKEENGTITANGDKQQKPAADRGSYQSPCWTETIFTEIGMEEEGWPEKGGEDHSGQPMDVVPLERIVVEGEEDSDLLPISLSDPAILLPEIGQTFNEDSNGYAFYNLYARFTGFGIRRSKNRYKDEGVKSMQEFCCIREGRDNSVTGPPTRIGCKAMVRLNRSSESQKWRVSAFISEHNHEMKRDLQHTKHFRSHNFIDEGTKRNIKEMVDNGMTPTAMYGLLSDNCHQMEVAIKAVWPETTHRVCKWHILKSAKENLGNIYSKRSSFKQEFHRVLNEPQTEAEFEKAWMWDMKKKWAPAYFREFFFARMSTTQRSESMNHVLKKYEKPSSSLHGFAKRYENFYNDRIEAEDGEEHDTYNEKVSTLTSLPIEKHASRVYTRGAFSRFKEQFKLSFSFMYGFTEIPKKYILKRWTKDARDSIPKHLEESYLKDKEAASSRTYRNTLLHKSALDMVRLGGTSSETYEKTLEVLTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTGVQLDDSVDSSDSEHGMPDDFCVADEDGIGQDVSAGEDSVDVDMTDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKASESTSKDESKNHAKGKKESTKQIRYCKQCGGHGHYKITCGQKSSYERKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g42520 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021300 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001400 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
