Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0025140 | OGI:03063430 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:23202156-23203745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggtgtttctcttcttgtgcgtcttccactgcttcagcaagtaacttgctgcctctggcataggggcactccggttctgcttgaagttccacagctcagggacaggatacatgccactgggattgtattcattcatttcaacaagggccttaacgacaacgttgcaagcctcatccccatattgcgccctcaaagcctgcagcttcccatcatcttccttgattatttcctgaatcattggataaaaaaatttcagcacagattagctgtagaacaatggctacctttttgtaataaataaattattactatgtacatatttgatattggactaataaatctcatctggcatctagtttttgccaacggtaaataattatacagagcaaaaattgtttcagttcagacatgtaacattcagaaatattgttactatataatacaggagtatgaattatgtatgcaaagttaacattgtaacttaatctcatgcatccacagtgataattgacgaattacaaataatgttgctaaaattggaagttcatccccattcattatatagcagcaaacacagatccagagtgaagaaagctcaagctaaaatattaacagtaaactccaaggtaatagttatgtgaagtatgaaccggtattttaaccttctcttttgttcctcaaaaatcctgcttgaatgattttcctgaaaatgataccatacacaaaagctatattttaaagtctaaaggagagtgtactgccctcccctgttcctcaaaggcagaattcagctattcaatattcagtagcaactaacattcttctttttttcaggggaagtagaaaagtagcagcatacaaagtagccaccatacgtaccattttaatcagaagagttcagtaataattaattacgagaaaataatttacagaatataatttatcaaatgctacagaagtaacctcactattggaataagaggccaagtaagcaatctaatgcttattgtcgtcagaaaattatggtaataattttagaatacatacacaaaggcataattatagggtacgattatgggaatgcatacctttgtctgtccagcagtctcgataactttgaaaggatgccattctggttttgttatctcatcttcccattttgaacaaacaagtgccaatttcatcttattatttggcattttatttttgcatgcattataaaaggccttctgatcaagctcacccattctcttcacacctataatggatcgaactcctgccattttttctaatccctgcacagcaagtgaatggtcctcggaaaaggatgagcggatagccggatacatgaattatgacaatcataggttcatagcaaagtaatagcgataaaacgtatacatttatcagttctttcttggcctttcttggcctctttcagctcatcaatggtcctttgattcttaataatcagggcctggttaagagaatccatggactccatgtcatcatctttttcttccagctttgtacgcaactcatcaagttccttcaatgttccatcttcctcagatcccatcattttcat
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| CDS seq | atgaaaatgatgggatctgaggaagatggaacattgaaggaacttgatgagttgcgtacaaagctggaagaaaaagatgatgacatggagtccatggattctcttaaccaggccctgattattaagaatcaaaggaccattgatgagctgaaagaggccaagaaaggccaagaaagaactgataaatgtgtgaagagaatgggtgagcttgatcagaaggccttttataatgcatgcaaaaataaaatgccaaataataagatgaaattggcacttgtttgttcaaaatgggaagatgagataacaaaaccagaatggcatcctttcaaagttatcgagactgctggacagacaaaggaaataatcaaggaagatgatgggaagctgcaggctttgagggcgcaatatggggatgaggcttgcaacgttgtcgttaaggcccttgttgaaatgaatgaatacaatcccagtggcatgtatcctgtccctgagctgtggaacttcaagcagaaccggagtgcccctatgccagaggcagcaagttacttgctgaagcagtggaagacgcacaagaagagaaacacctga
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| Protein seq | MKMMGSEEDGTLKELDELRTKLEEKDDDMESMDSLNQALIIKNQRTIDELKEAKKGQERTDKCVKRMGELDQKAFYNACKNKMPNNKMKLALVCSKWEDEITKPEWHPFKVIETAGQTKEIIKEDDGKLQALRAQYGDEACNVVVKALVEMNEYNPSGMYPVPELWNFKQNRSAPMPEAASYLLKQWKTHKKRNT |
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| Function | Factor of DNA methylation 1 [UniProtKB/Swiss-Prot:Q9S9P3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0025140 | OsKeNa_03g0025140.01 | Chr03 | 23202156 | 23203745 | - | NAM | ||
| CDS seq | atgaaaatgatgggatctgaggaagatggaacattgaaggaacttgatgagttgcgtacaaagctggaagaaaaagatgatgacatggagtccatggattctcttaaccaggccctgattattaagaatcaaaggaccattgatgagctgaaagaggccaagaaaggccaagaaagaactgataaatgtgtgaagagaatgggtgagcttgatcagaaggccttttataatgcatgcaaaaataaaatgccaaataataagatgaaattggcacttgtttgttcaaaatgggaagatgagataacaaaaccagaatggcatcctttcaaagttatcgagactgctggacagacaaaggaaataatcaaggaagatgatgggaagctgcaggctttgagggcgcaatatggggatgaggcttgcaacgttgtcgttaaggcccttgttgaaatgaatgaatacaatcccagtggcatgtatcctgtccctgagctgtggaacttcaagcagaaccggagtgcccctatgccagaggcagcaagttacttgctgaagcagtggaagacgcacaagaagagaaacacctga
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| Protein seq | MKMMGSEEDGTLKELDELRTKLEEKDDDMESMDSLNQALIIKNQRTIDELKEAKKGQERTDKCVKRMGELDQKAFYNACKNKMPNNKMKLALVCSKWEDEITKPEWHPFKVIETAGQTKEIIKEDDGKLQALRAQYGDEACNVVVKALVEMNEYNPSGMYPVPELWNFKQNRSAPMPEAASYLLKQWKTHKKRNT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.154069 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0596400 | RBH | 0.0 | 0.0 | 1.940383 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g39910 | RBH | 0.0 | 0.0 | 0.504066 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0596400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025360 | RBH | 0.0 | 0.0 | 1.090385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025180 | RBH | 0.0 | 0.0 | 5.460101 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024930 | SBH | 0.000000 | 0.0 | 11.448337 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0387000 | SBH | 0.007927 | 0.038266 | 5.795044 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024730 | SBH | 0.0 | 0.0 | 1.237630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0387100 | RBH | 0.198808 | 0.014801 | 11.046296 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025130 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024880 | SBH | 0.0 | 0.0 | 0.550319 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024780 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024870 | RBH | 0.0 | 0.0 | 4.113190 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024840 | RBH | 0.0 | 1.695859 | 13.398901 |
