Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0025010 | OGI:03063430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:24390613-24393982 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actgtattttgcgaatattcatatagcctcaactctcaaatgtgcactacaatgtcgccagtagtgacagacaatgtctgggagatatgaatacttgcttcactaataggcagcctcatccaactacatgtcagggacgaattctacagataacgataccacgagcagggtccagatctcactcaggtgtttctcttcttgtgcgtcttccactgctttagcaagtaacttgctgcctctggcataggggcactccggttctgcttgaagttccacagctcagggacaggatacctgccactgggattgtattcattcatttcaacaagggccttaacgacaacgttgcaagcctcatccccatattgcgccctcaaagcctgtagcttcccatcatcttccttgattatttcctgaatcattggATaaaaaaatttcagcacagattagctgtagaacaatggctacctttttgtaataaataaattattactatgtacatatttgatattggactaatagatctcatctggcatctagtttttgccaacggtaaataattatacagagcaaaaattgtttcagttcagacatgtaacattcagaaatattgttacaggagtataaattatgtatgcaaagttaacattgtaacttaatctcatgcattcacagtgataattgacgaattacaaataatgttgctaaaattggaagttcatccccattcatTAtatagcagcaaacacagatccagagtgaagaaagctcaagctaaaatattaacagtaaactccaagggaatagttatgtgaagtatgaaccggtattttaaccttctcttttgttcctcaaaaatcctgcttgaatgattttcctgaaaatgataccatacacaaaagctatattttaaagtctaaaggagagtgtactgccctcccctgttcctcaaaggcagaattcagctattcaatattcagtagcaactaacattcttctttttttcaggggaagtagaaaagtagcagcatacaaagtagccaccatacgtaccattttaatcagaagagttcagtaataattaactacgagaaaataatttacagaatatagtttatcaaatgctacagaagtaacctcactattggaataagaggccaagtaagcaatctaatgcttattgttgtcagaaaattatggtaataattttagaatacatacacaaaggcataattatagggtacgattatgggaatgcatacctttatctgtccagcagtctcgataactttgaaaggatgccattctggttttgttatctcatcttcccattttgaacaaacaagtgccaatttcagcttatcatttggcattttatttttgcatgcattataaaaggtcttctgatcaagctcacccattctcttcacacctataatggatcgaactcctgccattttttctaatccctgcacagcaagtgaatggtccccggaaaaggatgagcggatagccggatacatgaattatgacaatcataggttcatagcaaagtaatagcgatagaacgtatacatttatcagttctttcttGgcctctttcagctcatcaatggtcctttgattcttaataatcagggcctggttaagagaatccatggactccatgtcatcatcttttcttccagctttgtacgcaactcatcaagttccttcaatgttccatcttcctcagatcccatcattttcattacctctatctttcctctcaactgttctttttccagctcaagtttttgtctcgaatccaactcgagttctaactcgacttgcttcctcaaagcctcttctttctcttgctgcaaaattcagtccgtgataatgtattttctccagtaagagagagaaaaatgtggaaataaataccttgtgtttctcaacaagccgcaaaagctcttcatctgcctccttctgctttaggtttgctaaattaagaagctcattctcctttgcattctatgagagttttgaacaacataaatatacatcaagatcaagcaatagtgacaacaacataaataattcatattcctcgaaaagatatagaaataccttttctttctctgctacgagttttcctctgtaaatattagtatttgtagccaaataattaagttccttacatctccggtcaatttcatgtttcttagcctgcagttcttcatacagttttaggttttcatcaattattctctttgaatctttgcaagcatgctgctgcagttctattatatctggtcacaaagaggaaaaaggcaaacccagaaaatacagtgagtacatgctaacactatacggcaaaaggacagtgacttatacagatcgtaccttacacatttaagaaaacaagtaggatattttttactttgccctatgctataaaaacattaaacatgaccaagatatatatgtacgtacttctattatgttcttcaaacaattgatctttctcttccatcatcctttcaagttttaggccattttggttgttcataagcttcaactcttctaagtatttgttcttctcttcgatttggcgagcataataacccacatgcctgcccatttttcgctggccttcatgttccagatcacatacacctttaagctctccatttttcctcaagtactttcccattggctcaagagagttatagtcatcacttcttgcaacccacccataaagatcatctcttctacagtttcttttgttccaatcagttttaccatacctctccacattgaaatgcttttcaaaagccaatgcatccttcattccattccagttttcagcaaacttcacgatagcataatctgcattgtctgttgaattccaaaggatagttacttggagtggtttgaatcgtgagaattgtgctcttagcctctcctcgctttCCccaacaaatcctttccctttcaactcagttggcagattaaccagtatacccatccatggccatacatacttctcttcactcccaggaggttgatgctcaacggtagcaagttgtggtgatgattccagtgagccagctagatcaaccttcagatagcgagcaagtgctaggtgtgtcgccttaaccttcgccttgtgcttcgaagcagcccctactcctgaggcatgctgcagaagatccttggagctgtaatcctgcttcttcttccctgggcagaatgggcaacgaaatgtgttgttgccatgcttcactttcacttttccggctctcagttgattataagtcttttcctcgtgcacaccaatatctgaatcactaacatcagattcttctgaagagctatggtccat
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| CDS seq | atggaccatagctcttcagaagaatctgatgttagtgattcagatattggtgtgcacgaggaaaagacttataatcaactgagagccggaaaagtgaaagtgaagcatggcaacaacacatttcgttgcccattctgcccagggaagaagaagcaggattacagctccaaggatcttctgcagcatgcctcaggagtaggggctgcttcgaagcacaaggcgaaggttaaggcgacacacctagcacttgctcgctatctgaaggttgatctagctggctcactggaatcatcaccacaacttgctaccgttgagcatcaacctcctgggagtgaagagaagtatgtatggccatggatgggtatactggttaatctgccaactgagttgaaagggaaaggatttgttggGGaaagcgaggagaggctaagagcacaattctcacgattcaaaccactccaagtaactatcctttggaattcaacagacaatgcagattatgctatcgtgaagtttgctgaaaactggaatggaatgaaggatgcattggcttttgaaaagcatttcaatgtggagaggtatggtaaaactgattggaacaaaagaaactgtagaagagatgatctttatgggtgggttgcaagaagtgatgactataactctcttgagccaatgggaaagtacttgaggaaaaatggagagcttaaaggtgtatgtgatctggaacatgaaggccagcgaaaaatgggcaggcatgtgggttattatgctcgccaaatcgaagagaagaacaaatacttagaagagttgaagcttatgaacaaccaaaatggcctaaaacttgaaaggatgatggaagagaaagatcaattgtttgaagaacataatagaaatataatagaactgcagcagcatgcttgcaaagattcaaagagaataattgatgaaaacctaaaactgtatgaagaactgcaggctaagaaacatgaaattgaccggagatgtaaggaacttaattatttggctacaaatactaatatttacagaggaaaactcgtagcagagaaagaaaagaatgcaaaggagaatgagcttcttaatttagcaaacctaaagcagaaggaggcagatgaagagcttttgcggcttgttgagaaacacaagcaagagaaagaagaggctttgaggaagcaagtcgagttagaactcgagttggattcgagacaaaaacttgagctggaaaaagaacagttgagaggaaagatagaggtaatgaaaatgatgggatctgaggaagatggaacattgaaggaacttgatgagttgcctggaagaaaagatgatgacatggagtccatggattctcttaaccaggccctgattattaagaatcaaaggaccattgatgagctgaaagaggcCaagaaagaactgataaatggattagaaaaaatggcaggagttcgatccattataggtgtgaagagaatgggtgagcttgatcagaagaccttttataatgcatgcaaaaataaaatgccaaatgataagctgaaattggcacttgtttgttcaaaatgggaagatgagataacaaaaccagaatggcatcctttcaaagttatcgagactgctggacagataaaggaaataatcaaggaagatgatgggaagctacaggctttgagggcgcaatatggggatgaggcttgcaacgttgtcgttaaggcccttgttgaaatgaatgaatacaatcccagtggcaggtatcctgtccctgagctgtggaacttcaagcagaaccggagtgcccctatgccagaggcagcaagttacttgctaaagcagtggaagacgcacaagaagagaaacacctga
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| Protein seq | MDHSSSEESDVSDSDIGVHEEKTYNQLRAGKVKVKHGNNTFRCPFCPGKKKQDYSSKDLLQHASGVGAASKHKAKVKATHLALARYLKVDLAGSLESSPQLATVEHQPPGSEEKYVWPWMGILVNLPTELKGKGFVGESEERLRAQFSRFKPLQVTILWNSTDNADYAIVKFAENWNGMKDALAFEKHFNVERYGKTDWNKRNCRRDDLYGWVARSDDYNSLEPMGKYLRKNGELKGVCDLEHEGQRKMGRHVGYYARQIEEKNKYLEELKLMNNQNGLKLERMMEEKDQLFEEHNRNIIELQQHACKDSKRIIDENLKLYEELQAKKHEIDRRCKELNYLATNTNIYRGKLVAEKEKNAKENELLNLANLKQKEADEELLRLVEKHKQEKEEALRKQVELELELDSRQKLELEKEQLRGKIEVMKMMGSEEDGTLKELDELPGRKDDDMESMDSLNQALIIKNQRTIDELKEAKKELINGLEKMAGVRSIIGVKRMGELDQKTFYNACKNKMPNDKLKLALVCSKWEDEITKPEWHPFKVIETAGQIKEIIKEDDGKLQALRAQYGDEACNVVVKALVEMNEYNPSGRYPVPELWNFKQNRSAPMPEAASYLLKQWKTHKKRNT |
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| Function | Protein INVOLVED IN DE NOVO 2 [UniProtKB/Swiss-Prot:Q8VZ79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0025010 | OsLima_03g0025010.01 | Chr03 | 24390613 | 24393982 | - | NAM | ||
| CDS seq | atggaccatagctcttcagaagaatctgatgttagtgattcagatattggtgtgcacgaggaaaagacttataatcaactgagagccggaaaagtgaaagtgaagcatggcaacaacacatttcgttgcccattctgcccagggaagaagaagcaggattacagctccaaggatcttctgcagcatgcctcaggagtaggggctgcttcgaagcacaaggcgaaggttaaggcgacacacctagcacttgctcgctatctgaaggttgatctagctggctcactggaatcatcaccacaacttgctaccgttgagcatcaacctcctgggagtgaagagaagtatgtatggccatggatgggtatactggttaatctgccaactgagttgaaagggaaaggatttgttggGGaaagcgaggagaggctaagagcacaattctcacgattcaaaccactccaagtaactatcctttggaattcaacagacaatgcagattatgctatcgtgaagtttgctgaaaactggaatggaatgaaggatgcattggcttttgaaaagcatttcaatgtggagaggtatggtaaaactgattggaacaaaagaaactgtagaagagatgatctttatgggtgggttgcaagaagtgatgactataactctcttgagccaatgggaaagtacttgaggaaaaatggagagcttaaaggtgtatgtgatctggaacatgaaggccagcgaaaaatgggcaggcatgtgggttattatgctcgccaaatcgaagagaagaacaaatacttagaagagttgaagcttatgaacaaccaaaatggcctaaaacttgaaaggatgatggaagagaaagatcaattgtttgaagaacataatagaaatataatagaactgcagcagcatgcttgcaaagattcaaagagaataattgatgaaaacctaaaactgtatgaagaactgcaggctaagaaacatgaaattgaccggagatgtaaggaacttaattatttggctacaaatactaatatttacagaggaaaactcgtagcagagaaagaaaagaatgcaaaggagaatgagcttcttaatttagcaaacctaaagcagaaggaggcagatgaagagcttttgcggcttgttgagaaacacaagcaagagaaagaagaggctttgaggaagcaagtcgagttagaactcgagttggattcgagacaaaaacttgagctggaaaaagaacagttgagaggaaagatagaggtaatgaaaatgatgggatctgaggaagatggaacattgaaggaacttgatgagttgcctggaagaaaagatgatgacatggagtccatggattctcttaaccaggccctgattattaagaatcaaaggaccattgatgagctgaaagaggcCaagaaagaactgataaatggattagaaaaaatggcaggagttcgatccattataggtgtgaagagaatgggtgagcttgatcagaagaccttttataatgcatgcaaaaataaaatgccaaatgataagctgaaattggcacttgtttgttcaaaatgggaagatgagataacaaaaccagaatggcatcctttcaaagttatcgagactgctggacagataaaggaaataatcaaggaagatgatgggaagctacaggctttgagggcgcaatatggggatgaggcttgcaacgttgtcgttaaggcccttgttgaaatgaatgaatacaatcccagtggcaggtatcctgtccctgagctgtggaacttcaagcagaaccggagtgcccctatgccagaggcagcaagttacttgctaaagcagtggaagacgcacaagaagagaaacacctga
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| Protein seq | MDHSSSEESDVSDSDIGVHEEKTYNQLRAGKVKVKHGNNTFRCPFCPGKKKQDYSSKDLLQHASGVGAASKHKAKVKATHLALARYLKVDLAGSLESSPQLATVEHQPPGSEEKYVWPWMGILVNLPTELKGKGFVGESEERLRAQFSRFKPLQVTILWNSTDNADYAIVKFAENWNGMKDALAFEKHFNVERYGKTDWNKRNCRRDDLYGWVARSDDYNSLEPMGKYLRKNGELKGVCDLEHEGQRKMGRHVGYYARQIEEKNKYLEELKLMNNQNGLKLERMMEEKDQLFEEHNRNIIELQQHACKDSKRIIDENLKLYEELQAKKHEIDRRCKELNYLATNTNIYRGKLVAEKEKNAKENELLNLANLKQKEADEELLRLVEKHKQEKEEALRKQVELELELDSRQKLELEKEQLRGKIEVMKMMGSEEDGTLKELDELPGRKDDDMESMDSLNQALIIKNQRTIDELKEAKKELINGLEKMAGVRSIIGVKRMGELDQKTFYNACKNKMPNDKLKLALVCSKWEDEITKPEWHPFKVIETAGQIKEIIKEDDGKLQALRAQYGDEACNVVVKALVEMNEYNPSGRYPVPELWNFKQNRSAPMPEAASYLLKQWKTHKKRNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0596400 | RBH | 0.0 | 0.0 | 1.940383 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g39910 | RBH | 0.0 | 0.0 | 0.504066 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0596400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025360 | RBH | 0.0 | 0.0 | 1.090385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025150 | RBH | 0.0 | 0.0 | 3.733927 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025190 | RBH | 0.0 | 0.0 | 10.278910 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024930 | RBH | 0.000000 | 0.0 | 11.448337 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0387000 | RBH | 0.007927 | 0.038266 | 5.795044 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024730 | RBH | 0.0 | 0.0 | 1.237630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0387100 | RBH | 0.198808 | 0.014801 | 11.046296 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024880 | RBH | 0.0 | 0.0 | 0.550319 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024870 | RBH | 0.0 | 0.0 | 4.113190 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024840 | RBH | 0.0 | 1.695859 | 13.398901 |
