Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0024230 | OGI:06027190 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:22319684-22320975 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatggtagttattgtacgcatcatcagcaatacagtcacgcaacatgctcatagcggcctcgctatttgttgcgtaatacatatggtcgaatgaatcgttcagcagcggcactggattgccgttgtagagagcattagtgaaccgataggtcggatctttactatccaacctaaagttgtgtagagcgaaagctgcatgaatgatgcgtgcagggatgtcctcatctcggtaataagggatttctttcaatattttccacatcttttttgcgatgacaaattgtctttccacgatccctcgcaacgtggagtgtcgatggttgaaagtctcttcccgtcctacgggtggtggggctccctcgaccgcaagttgatccctgtggtaccgtacatgtgggtacggtgcaaggaatcccatcctggtaggaaatccggagtcgacaagtaggtatctgcctggttaacggcgcagaattaaatattagtgcacatgtgtagaattaaataaaatcaagacatttggcaataaaaaaagtgtattgactgatacaactcacctaacggtacccgtgggaaatcgtaggggtaagcctgcactgcctcattgagaatcctttggtcgtgaactgatccaggccagccagcatcacagaaaataattctcccatcatgatcacatattactagaacatttctggttgttatgtggtgacggttcctgtgttgcatagcgctagctgcattaggcagaactggaatatgtgtgccatccacagctcccactgattggtagaaaggcttgaaaggattctcttgcagaatctgagggttgtaatctaagaagttgggatcaaccggtttcaatattttcccagcgagatcattcatagcctgcaaaacatggtggaagtgaaccgacactgtcgagttggagcggacccaccgattgttcccgtctctgattggacgatttccacccatcgtgtacaagaaaataccaagcttttccatggaacagacccctgctgttcctacaagaccaaaagaagtgaccaatagatcatgcaaattgtgtatctcctccgcagtaagcctgaacattgccctgcattggcttcgatttgccatcgtgtccatcatccaactgataccggtttgcaccggtattctccttggtgccctctcattgaaatcaagggtagcagccacgtactcaatgatggcatcttcttctttgctgcttgtgtgaccgcctccattccaactcgatccacccgcgccgtaactcat
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| CDS seq | atgagttacggcgcgggtggatcgagttggaatggaggcggtcacacaagcagcaaagaagaagatgccatcattgagtacgtggctgctacccttgatttcaatgagagggcaccaaggagaataccggtgcaaaccggcagatacctacttgtcgactccggatttcctaccaggatgggattccttgcaccgtacccacatgtacggtaccacagggatcaacttgcggtcgagggagccccaccacccgtaggacgggaagagactttcaaccatcgacactccacgttgcgagggatcgtggaaagacaatttgtcatcgcaaaaaagatgtggaaaatattgaaagaaatcccttattaccgagatgaggacatccctgcacgcatcattcatgcagctttcgctctacacaactttaggttggatagtaaagatccgacctatcggttcactaatgctctctacaacggcaatccagtgccgctgctgaacgattcattcgaccatatgtattacgcaacaaatagcgaggccgctatgagcatgttgcgtgactgtattgctgatgatgcgtacaataactaccattag
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| Protein seq | MSYGAGGSSWNGGGHTSSKEEDAIIEYVAATLDFNERAPRRIPVQTGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEGAPPPVGREETFNHRHSTLRGIVERQFVIAKKMWKILKEIPYYRDEDIPARIIHAAFALHNFRLDSKDPTYRFTNALYNGNPVPLLNDSFDHMYYATNSEAAMSMLRDCIADDAYNNYH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0024230 | OsKeNa_03g0024230.01 | Chr03 | 22319684 | 22320975 | - | NAM | ||
| CDS seq | atgagttacggcgcgggtggatcgagttggaatggaggcggtcacacaagcagcaaagaagaagatgccatcattgagtacgtggctgctacccttgatttcaatgagagggcaccaaggagaataccggtgcaaaccggcagatacctacttgtcgactccggatttcctaccaggatgggattccttgcaccgtacccacatgtacggtaccacagggatcaacttgcggtcgagggagccccaccacccgtaggacgggaagagactttcaaccatcgacactccacgttgcgagggatcgtggaaagacaatttgtcatcgcaaaaaagatgtggaaaatattgaaagaaatcccttattaccgagatgaggacatccctgcacgcatcattcatgcagctttcgctctacacaactttaggttggatagtaaagatccgacctatcggttcactaatgctctctacaacggcaatccagtgccgctgctgaacgattcattcgaccatatgtattacgcaacaaatagcgaggccgctatgagcatgttgcgtgactgtattgctgatgatgcgtacaataactaccattag
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| Protein seq | MSYGAGGSSWNGGGHTSSKEEDAIIEYVAATLDFNERAPRRIPVQTGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEGAPPPVGREETFNHRHSTLRGIVERQFVIAKKMWKILKEIPYYRDEDIPARIIHAAFALHNFRLDSKDPTYRFTNALYNGNPVPLLNDSFDHMYYATNSEAAMSMLRDCIADDAYNNYH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643050 | RBH | 0.0 | 0.0 | 0.343557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006020 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024310 | RBH | 0.0 | 0.000000 | 0.414278 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011420 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024060 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0381300 | RBH | 0.0017395 | 0.0051845 | 0.06527 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011410 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011260 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013200 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0011410 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028010 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020350 | SBH | 0.0 | 0.0 | 0.0 |
