Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0022300 | OGI:03047860 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:18710259-18712225 | ||||||||
| Gene Symbol | GLUA3, Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3 | ||||||||||
| DNA seq | aaaagcattgagttcagtcccacaaaaacatggcaaccatcaaattccctatagttttctccgtcgtttgcttgttcctcttgtgtaatggttcgttagcccaacttcttagccaaagtactagtcaatggcaaagttctcgccgtggaagtccaagagagtgcagatttgatcggttgcaagcatttgagccgattcgcactgtaaggtcccaagctggtacaactgagttttttgatgtctctaatgagttgtttcaatgtactggagtatctgttgtccgtcgagttatcgaacctagaggtcttctgttacctcactactccaatggagcaactttggtatatgtcatccaaggtttgtgattacatttaagtatatattgattaatccttgtacttatatcattttattaacatggcaatccacacttgcaggcagaggtataacaggaccaactttcccaggatgtcctgagacctatcaacaacagtttcagcaatccgagcaagaccaacaattggaaggccaaagccaaagccataaatttagagatgaacatcaaaagatccaccgttttcaacagggggatgtagttgcattgcctgctggtgttgctcattggtgctacaatgatggtgatgcaccaattgttgccatatatgtcactgatatatacaatagtgctaaccaacttgatcctagacacagggtaattcatcgtatattatctatagtcattaccctaagtattccaatcatttatttgatttattgggcaactctcttttgacatactaattgtttgtttatggattgttaggatttctttttagctggcaacaataagataggtcaacaattgtatagatatgaggcaagggacaattcgaagaacgtctttggtggatttagtgttgaactacttagcgaggctcttggcataagcagtggagtagcaagacaactccagtgccaaaatgaccaaagaggagaaatagttcgtgttgagcatgggctttccttgctccaaccatatgcatcgttgcaagagcaacaacaagaacaggtgcaatcgagagactatggccaaacacaatatcaacaaaaacaacttcaaggtagttgctctaatggtttggatgagaccttttgtaccatgagggtaaggcaaaatatcgacaacccaaacctcgcagatacatacaaccccagagcaggaaggatcacatatctaaatggccaaaagttccccattcttaatcttgtacagatgagtgccgttaaagtaaatttatatcaggtaaaaccacatgacattttatcctcatgaaagaaaatattttgaaaattatgctgacaatgttctctctattgcagaacgcactcctttcacctttttggaacatcaacgctcatagtgtcgtgtatattactcaaggtcgtgcccgagttcaagtcgtcaacaacaatggaaagacagtgttcgatggagagctccgtcgtgggcagcttctaattataccacaacaccatgtagtcattaaaaaggcacaaagggaaggatgctcatatattgcattgaaaaccaaccctgactccatggttagccacatggcaggaaagaattccatcttccgcgcacttcctgacgatgttgtagcaaatgcatatcgtatctcaagagaagaagctaggaggctcaagcacaacaggggagatgagttaggtgtgttcactcctagtcatgcctacaagagctaccaagacatatctgtgagtgcataaccaagaaatgtcaatcataggcttggattgctaaggatggttttcaaataaatcataagcaataaaagagtgcatgttgttgcagctatgtaatagtggatggttggaagaataataataaatttgtgttcctttaagtaactatattaaatatgagagaaaaattaagaaatgccatc
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| CDS seq | atggcaaccatcaaattccctatagttttctccgtcgtttgcttgttcctcttgtgtaatggttcgttagcccaacttcttagccaaagtactagtcaatggcaaagttctcgccgtggaagtccaagagagtgcagatttgatcggttgcaagcatttgagccgattcgcactgtaaggtcccaagctggtacaactgagttttttgatgtctctaatgagttgtttcaatgtactggagtatctgttgtccgtcgagttatcgaacctagaggtcttctgttacctcactactccaatggagcaactttggtatatgtcatccaaggcagaggtataacaggaccaactttcccaggatgtcctgagacctatcaacaacagtttcagcaatccgagcaagaccaacaattggaaggccaaagccaaagccataaatttagagatgaacatcaaaagatccaccgttttcaacagggggatgtagttgcattgcctgctggtgttgctcattggtgctacaatgatggtgatgcaccaattgttgccatatatgtcactgatatatacaatagtgctaaccaacttgatcctagacacagggatttctttttagctggcaacaataagataggtcaacaattgtatagatatgaggcaagggacaattcgaagaacgtctttggtggatttagtgttgaactacttagcgaggctcttggcataagcagtggagtagcaagacaactccagtgccaaaatgaccaaagaggagaaatagttcgtgttgagcatgggctttccttgctccaaccatatgcatcgttgcaagagcaacaacaagaacaggtgcaatcgagagactatggccaaacacaatatcaacaaaaacaacttcaaggtagttgctctaatggtttggatgagaccttttgtaccatgagggtaaggcaaaatatcgacaacccaaacctcgcagatacatacaaccccagagcaggaaggatcacatatctaaatggccaaaagttccccattcttaatcttgtacagatgagtgccgttaaagtaaatttatatcagaacgcactcctttcacctttttggaacatcaacgctcatagtgtcgtgtatattactcaaggtcgtgcccgagttcaagtcgtcaacaacaatggaaagacagtgttcgatggagagctccgtcgtgggcagcttctaattataccacaacaccatgtagtcattaaaaaggcacaaagggaaggatgctcatatattgcattgaaaaccaaccctgactccatggttagccacatggcaggaaagaattccatcttccgcgcacttcctgacgatgttgtagcaaatgcatatcgtatctcaagagaagaagctaggaggctcaagcacaacaggggagatgagttaggtgtgttcactcctagtcatgcctacaagagctaccaagacatatctgtgagtgcataa
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| Protein seq | MATIKFPIVFSVVCLFLLCNGSLAQLLSQSTSQWQSSRRGSPRECRFDRLQAFEPIRTVRSQAGTTEFFDVSNELFQCTGVSVVRRVIEPRGLLLPHYSNGATLVYVIQGRGITGPTFPGCPETYQQQFQQSEQDQQLEGQSQSHKFRDEHQKIHRFQQGDVVALPAGVAHWCYNDGDAPIVAIYVTDIYNSANQLDPRHRDFFLAGNNKIGQQLYRYEARDNSKNVFGGFSVELLSEALGISSGVARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQQQEQVQSRDYGQTQYQQKQLQGSCSNGLDETFCTMRVRQNIDNPNLADTYNPRAGRITYLNGQKFPILNLVQMSAVKVNLYQNALLSPFWNINAHSVVYITQGRARVQVVNNNGKTVFDGELRRGQLLIIPQHHVVIKKAQREGCSYIALKTNPDSMVSHMAGKNSIFRALPDDVVANAYRISREEARRLKHNRGDELGVFTPSHAYKSYQDISVSA |
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| Function | Glutelin type-A 3 [UniProtKB/Swiss-Prot:Q09151] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0022300 | OsKeNa_03g0022300.01 | Chr03 | 18710259 | 18712225 | + | NAM | ||
| CDS seq | atggcaaccatcaaattccctatagttttctccgtcgtttgcttgttcctcttgtgtaatggttcgttagcccaacttcttagccaaagtactagtcaatggcaaagttctcgccgtggaagtccaagagagtgcagatttgatcggttgcaagcatttgagccgattcgcactgtaaggtcccaagctggtacaactgagttttttgatgtctctaatgagttgtttcaatgtactggagtatctgttgtccgtcgagttatcgaacctagaggtcttctgttacctcactactccaatggagcaactttggtatatgtcatccaaggcagaggtataacaggaccaactttcccaggatgtcctgagacctatcaacaacagtttcagcaatccgagcaagaccaacaattggaaggccaaagccaaagccataaatttagagatgaacatcaaaagatccaccgttttcaacagggggatgtagttgcattgcctgctggtgttgctcattggtgctacaatgatggtgatgcaccaattgttgccatatatgtcactgatatatacaatagtgctaaccaacttgatcctagacacagggatttctttttagctggcaacaataagataggtcaacaattgtatagatatgaggcaagggacaattcgaagaacgtctttggtggatttagtgttgaactacttagcgaggctcttggcataagcagtggagtagcaagacaactccagtgccaaaatgaccaaagaggagaaatagttcgtgttgagcatgggctttccttgctccaaccatatgcatcgttgcaagagcaacaacaagaacaggtgcaatcgagagactatggccaaacacaatatcaacaaaaacaacttcaaggtagttgctctaatggtttggatgagaccttttgtaccatgagggtaaggcaaaatatcgacaacccaaacctcgcagatacatacaaccccagagcaggaaggatcacatatctaaatggccaaaagttccccattcttaatcttgtacagatgagtgccgttaaagtaaatttatatcagaacgcactcctttcacctttttggaacatcaacgctcatagtgtcgtgtatattactcaaggtcgtgcccgagttcaagtcgtcaacaacaatggaaagacagtgttcgatggagagctccgtcgtgggcagcttctaattataccacaacaccatgtagtcattaaaaaggcacaaagggaaggatgctcatatattgcattgaaaaccaaccctgactccatggttagccacatggcaggaaagaattccatcttccgcgcacttcctgacgatgttgtagcaaatgcatatcgtatctcaagagaagaagctaggaggctcaagcacaacaggggagatgagttaggtgtgttcactcctagtcatgcctacaagagctaccaagacatatctgtgagtgcataa
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| Protein seq | MATIKFPIVFSVVCLFLLCNGSLAQLLSQSTSQWQSSRRGSPRECRFDRLQAFEPIRTVRSQAGTTEFFDVSNELFQCTGVSVVRRVIEPRGLLLPHYSNGATLVYVIQGRGITGPTFPGCPETYQQQFQQSEQDQQLEGQSQSHKFRDEHQKIHRFQQGDVVALPAGVAHWCYNDGDAPIVAIYVTDIYNSANQLDPRHRDFFLAGNNKIGQQLYRYEARDNSKNVFGGFSVELLSEALGISSGVARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQQQEQVQSRDYGQTQYQQKQLQGSCSNGLDETFCTMRVRQNIDNPNLADTYNPRAGRITYLNGQKFPILNLVQMSAVKVNLYQNALLSPFWNINAHSVVYITQGRARVQVVNNNGKTVFDGELRRGQLLIIPQHHVVIKKAQREGCSYIALKTNPDSMVSHMAGKNSIFRALPDDVVANAYRISREEARRLKHNRGDELGVFTPSHAYKSYQDISVSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.068085 | 0.0 | 0.146360 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0427300 | RBH | 0.231428 | 0.0 | 113.863419 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31360 | RBH | 0.181044 | 0.0 | 28.498812 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0427300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0034100 | SBH | 0.0 | 0.0 | 0.576658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0294400 | RBH | 0 | 4.518699 | 0.030304 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021890 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0297600 | RBH | 0.1228175 | 3.052432 | 0.029788 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021970 | RBH | 0.0 | 0.0 | 1.044270 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021880 | RBH | 0.0 | 0.0 | 0.0 |
