Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0034100 | OGI:01096720 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:32304411-32306420 | ||||||||
| Gene Symbol | GLUA1, Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16 | ||||||||||
| DNA seq | aaaaccattcaagttcattagtactacaacaacatggcatccataaatcgccccatagttttcttcacagtttgcttgttcctattgtgcaatggctctctagcccagcagctattaggccagagcactagtcaatggcagagttctcgtcgtggaagtccaagagaatgcaggttcgataggttgcaagcatttgagccaattcggagtgtgaggtctcaagctggcacaactgagttcttcgatgtctctaatgagcaatttcaatgtaccggagtatctgttgtccgtcgagttattgaacctagaggccttctactaccccattacactaatggtgcatctctagtatatatcatccaaggttcgtgcaacaatttaagtgcataatgaattaatgatcagcttccatgtttatattgcttgtaattaacatgcatgccatactttcagggagaggtataacagggccaactttcccaggctgtcctgagtcctaccaacaacagttccaacaatcaggccaagcccaattgaccgaaagtcaaagccaaagtcataagttcaaggatgaacatcaaaagatccaccgtttcagacaaggagatgtaattgcattgcctgctggtgtagctcattggtgctacaatgatggtgaagtgccagttgttgccatatatgtcactgatctcaacaacggtgctaatcaacttgaccctaggcaaagggtaattaagcagaacttttccaaagctaaacatttttactactattttgatatttttattccacttatcttagatgatgatttagccttttaatcaactgttaggatttcttgttagctggaaataagagaaaccctcaagcatacaggcgtgaggttgaggagcggtcacagaacatatttagtggctttagcactgaactacttagcgaggctcttggcgtaagcagccaagtggcaaggcagctccaatgtcaaaatgaccaaagaggagaaattgtccgtgtcgaacatgggctcagtttgctgcagccatatgcatcattgcaggagcaggaacaaggacaagtgcaatcaagagagcgttatcaagaaggacaatatcagcaaagtcaatatggaagtggctgctctaacggtttggatgagaccttttgcaccatgaaggtaaggcaaaacatcgataatcctaaccgtgctgatacatacaatccaagagctggaagggttacaaatctcaacacccagaatttccccattcttaatcttgtacagatgagtgcagtcaaagtaaatctataccaggtaaaatgaacagcacattttttttcttggtaaaagctttaatgcacacaatatgctaatgatgtgcaccttttctattgcagaacgcactcctttcaccattttggaacatcaacgctcacagcgtcgtgtatattactcaaggccgtgcccgggttcaagttgtcaacaacaatggaaagacagtgttcaacggcgagcttcgccgcggacagctgcttattataccacaacactatgcagttgtaaagaaggcacaaagagaaggatgtgcttacattgcattcaagaccaatcctaactctatggtaagccacattgcaggaaagagttccatcttccgtgctctcccaaatgatgttctagcaaatgcatatcgcatctcaagagaagaggctcagaggctcaagcataacagaggagatgagttcggtgcattcactccaatccaatacaagagctaccaagacgtttataatgcggcagaatcctcttaggtcggcttgcggataaagaataactaaataaataaattgcaagcaattgttttgctgctatgtactgtccagtctttcgactaatgatgataaagcctctctttatccttatgtttgttctttccttctacagtaatgttcgaaaataagcaattgttttgttctgtaatccataaaaatataacacccctttaagtagtt
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| CDS seq | atggcatccataaatcgccccatagttttcttcacagtttgcttgttcctattgtgcaatggctctctagcccagcagctattaggccagagcactagtcaatggcagagttctcgtcgtggaagtccaagagaatgcaggttcgataggttgcaagcatttgagccaattcggagtgtgaggtctcaagctggcacaactgagttcttcgatgtctctaatgagcaatttcaatgtaccggagtatctgttgtccgtcgagttattgaacctagaggccttctactaccccattacactaatggtgcatctctagtatatatcatccaagggagaggtataacagggccaactttcccaggctgtcctgagtcctaccaacaacagttccaacaatcaggccaagcccaattgaccgaaagtcaaagccaaagtcataagttcaaggatgaacatcaaaagatccaccgtttcagacaaggagatgtaattgcattgcctgctggtgtagctcattggtgctacaatgatggtgaagtgccagttgttgccatatatgtcactgatctcaacaacggtgctaatcaacttgaccctaggcaaagggatttcttgttagctggaaataagagaaaccctcaagcatacaggcgtgaggttgaggagcggtcacagaacatatttagtggctttagcactgaactacttagcgaggctcttggcgtaagcagccaagtggcaaggcagctccaatgtcaaaatgaccaaagaggagaaattgtccgtgtcgaacatgggctcagtttgctgcagccatatgcatcattgcaggagcaggaacaaggacaagtgcaatcaagagagcgttatcaagaaggacaatatcagcaaagtcaatatggaagtggctgctctaacggtttggatgagaccttttgcaccatgaaggtaaggcaaaacatcgataatcctaaccgtgctgatacatacaatccaagagctggaagggttacaaatctcaacacccagaatttccccattcttaatcttgtacagatgagtgcagtcaaagtaaatctataccagaacgcactcctttcaccattttggaacatcaacgctcacagcgtcgtgtatattactcaaggccgtgcccgggttcaagttgtcaacaacaatggaaagacagtgttcaacggcgagcttcgccgcggacagctgcttattataccacaacactatgcagttgtaaagaaggcacaaagagaaggatgtgcttacattgcattcaagaccaatcctaactctatggtaagccacattgcaggaaagagttccatcttccgtgctctcccaaatgatgttctagcaaatgcatatcgcatctcaagagaagaggctcagaggctcaagcataacagaggagatgagttcggtgcattcactccaatccaatacaagagctaccaagacgtttataatgcggcagaatcctcttag
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| Protein seq | MASINRPIVFFTVCLFLLCNGSLAQQLLGQSTSQWQSSRRGSPRECRFDRLQAFEPIRSVRSQAGTTEFFDVSNEQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPESYQQQFQQSGQAQLTESQSQSHKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQRDFLLAGNKRNPQAYRREVEERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTMKVRQNIDNPNRADTYNPRAGRVTNLNTQNFPILNLVQMSAVKVNLYQNALLSPFWNINAHSVVYITQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPNDVLANAYRISREEAQRLKHNRGDEFGAFTPIQYKSYQDVYNAAESS |
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| Function | Glutelin type-A 1 [UniProtKB/Swiss-Prot:P07728] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034100 | OsKeNa_01g0034100.01 | Chr01 | 32304411 | 32306420 | + | NAM | ||
| CDS seq | atggcatccataaatcgccccatagttttcttcacagtttgcttgttcctattgtgcaatggctctctagcccagcagctattaggccagagcactagtcaatggcagagttctcgtcgtggaagtccaagagaatgcaggttcgataggttgcaagcatttgagccaattcggagtgtgaggtctcaagctggcacaactgagttcttcgatgtctctaatgagcaatttcaatgtaccggagtatctgttgtccgtcgagttattgaacctagaggccttctactaccccattacactaatggtgcatctctagtatatatcatccaagggagaggtataacagggccaactttcccaggctgtcctgagtcctaccaacaacagttccaacaatcaggccaagcccaattgaccgaaagtcaaagccaaagtcataagttcaaggatgaacatcaaaagatccaccgtttcagacaaggagatgtaattgcattgcctgctggtgtagctcattggtgctacaatgatggtgaagtgccagttgttgccatatatgtcactgatctcaacaacggtgctaatcaacttgaccctaggcaaagggatttcttgttagctggaaataagagaaaccctcaagcatacaggcgtgaggttgaggagcggtcacagaacatatttagtggctttagcactgaactacttagcgaggctcttggcgtaagcagccaagtggcaaggcagctccaatgtcaaaatgaccaaagaggagaaattgtccgtgtcgaacatgggctcagtttgctgcagccatatgcatcattgcaggagcaggaacaaggacaagtgcaatcaagagagcgttatcaagaaggacaatatcagcaaagtcaatatggaagtggctgctctaacggtttggatgagaccttttgcaccatgaagatgagtgcagtcaaagtaaatctataccagaacgcactcctttcaccattttggaacatcaacgctcacagcgtcgtgtatattactcaaggccgtgcccgggttcaagttgtcaacaacaatggaaagacagtgttcaacggcgagcttcgccgcggacagctgcttattataccacaacactatgcagttgtaaagaaggcacaaagagaaggatgtgcttacattgcattcaagaccaatcctaactctatggtaagccacattgcaggaaagagttccatcttccgtgctctcccaaatgatgttctagcaaatgcatatcgcatctcaagagaagaggctcagaggctcaagcataacagaggagatgagttcggtgcattcactccaatccaatacaagagctaccaagacgtttataatgcggcagaatcctcttag
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| Protein seq | MASINRPIVFFTVCLFLLCNGSLAQQLLGQSTSQWQSSRRGSPRECRFDRLQAFEPIRSVRSQAGTTEFFDVSNEQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPESYQQQFQQSGQAQLTESQSQSHKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQRDFLLAGNKRNPQAYRREVEERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTMKMSAVKVNLYQNALLSPFWNINAHSVVYITQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPNDVLANAYRISREEAQRLKHNRGDEFGAFTPIQYKSYQDVYNAAESS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0034100 | OsKeNa_01g0034100.02 | Chr01 | 32304411 | 32306420 | + | NAM | ||
| CDS seq | atggcatccataaatcgccccatagttttcttcacagtttgcttgttcctattgtgcaatggctctctagcccagcagctattaggccagagcactagtcaatggcagagttctcgtcgtggaagtccaagagaatgcaggttcgataggttgcaagcatttgagccaattcggagtgtgaggtctcaagctggcacaactgagttcttcgatgtctctaatgagcaatttcaatgtaccggagtatctgttgtccgtcgagttattgaacctagaggccttctactaccccattacactaatggtgcatctctagtatatatcatccaagggagaggtataacagggccaactttcccaggctgtcctgagtcctaccaacaacagttccaacaatcaggccaagcccaattgaccgaaagtcaaagccaaagtcataagttcaaggatgaacatcaaaagatccaccgtttcagacaaggagatgtaattgcattgcctgctggtgtagctcattggtgctacaatgatggtgaagtgccagttgttgccatatatgtcactgatctcaacaacggtgctaatcaacttgaccctaggcaaagggatttcttgttagctggaaataagagaaaccctcaagcatacaggcgtgaggttgaggagcggtcacagaacatatttagtggctttagcactgaactacttagcgaggctcttggcgtaagcagccaagtggcaaggcagctccaatgtcaaaatgaccaaagaggagaaattgtccgtgtcgaacatgggctcagtttgctgcagccatatgcatcattgcaggagcaggaacaaggacaagtgcaatcaagagagcgttatcaagaaggacaatatcagcaaagtcaatatggaagtggctgctctaacggtttggatgagaccttttgcaccatgaaggtaaggcaaaacatcgataatcctaaccgtgctgatacatacaatccaagagctggaagggttacaaatctcaacacccagaatttccccattcttaatcttgtacagatgagtgcagtcaaagtaaatctataccagaacgcactcctttcaccattttggaacatcaacgctcacagcgtcgtgtatattactcaaggccgtgcccgggttcaagttgtcaacaacaatggaaagacagtgttcaacggcgagcttcgccgcggacagctgcttattataccacaacactatgcagttgtaaagaaggcacaaagagaaggatgtgcttacattgcattcaagaccaatcctaactctatggtaagccacattgcaggaaagagttccatcttccgtgctctcccaaatgatgttctagcaaatgcatatcgcatctcaagagaagaggctcagaggctcaagcataacagaggagatgagttcggtgcattcactccaatccaatacaagagctaccaagacgtttataatgcggcagaatcctcttag
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| Protein seq | MASINRPIVFFTVCLFLLCNGSLAQQLLGQSTSQWQSSRRGSPRECRFDRLQAFEPIRSVRSQAGTTEFFDVSNEQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPESYQQQFQQSGQAQLTESQSQSHKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQRDFLLAGNKRNPQAYRREVEERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTMKVRQNIDNPNRADTYNPRAGRVTNLNTQNFPILNLVQMSAVKVNLYQNALLSPFWNINAHSVVYITQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPNDVLANAYRISREEAQRLKHNRGDEFGAFTPIQYKSYQDVYNAAESS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 32305243 | 32305722 | + | OsKeNa_01g0034100.02 | OsKeNa_01g0034100.02,OsKeNa_01g0034100.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.576658 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0762500 | RBH | 0.544323 | 0.155102 | 84.247124 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55690 | RBH | 0.350576 | 0.098133 | 20.444790 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0762500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034580 | RBH | 0.361059 | 1.357998 | 1.574033 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009860 | RBH | 0.066839 | 0.0 | 0.165994 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034540 | RBH | 0.679084 | 0.000000 | 2.393564 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033840 | RBH | 0.063373 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033590 | RBH | 2.906449 | 0.000000 | 1.792325 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0533400 | RBH | 0.900337 | 3.314996 | 3.9685695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033330 | RBH | 0.044721 | 0.0 | 0.466185 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0528100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033490 | RBH | 0.111979 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033540 | RBH | 0.000000 | 5.993310 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033800 | RBH | 1.664449 | 8.735029 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033830 | RBH | 0.084353 | 0.137674 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033670 | RBH | 0.101368 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034130 | RBH | 0.060375 | 0.838368 | 0.989286 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033790 | RBH | 0.453959 | 0.000000 | 1.158269 |
