Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0016570 | OGI:03032760 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:12637733-12641897 | ||||||||
| Gene Symbol | S6K1, OsS6K1 | ||||||||||
| DNA seq | cgaatttacatttcaacatgcataaacggtatgctttaaatttgcatctcaacaggatttgtgttgcaacatgcagcaggatttggatttggaaacatgtacgtgaacggccgagaaaacctaaatgtgccaggggcccagggcccagggggcaggggttgatcatagaagccagggcaactgttccatctggcaatagacaaatttgtctggtttcaacaagtaccacgttcatcttttactagtatcttcaacgaagaaaagatactggggttttcccagacaaaccgaacaacataaataggtagttttacataataatcatcgaaacagtaaattttgtcagcttcatacccagtggcaagatgtatttcggtctcaactggaggtcttcagcctagaggactcggcctctgaaggaagggcgctggcctcacatagctgaatcccacgaagttgctatctgcagcgacagggctggccactggagagtcgagcacgggcatgctggtccagcactcgtcaaagttggcgatgcaggttttgccagcaacatttgggcggaagcttggctgaatctgtcgggagtctagcttcttccagtttactgacttgaaccacttgtgattctttatttcattgctcccgcctggtccacagcccagcctcctgccagcttctttgtgcagtaactgaaacataagatggactaaaaattcaatcccaagatcaaacaggttgactctagaaactagcacaaggctgcaaaaaaatatgggtgcggtgaatcatagcaacttggcaaacaacttacgccttttagcagagaatgaacttcgctagataaatatgccggaagcttaattttctccttaacaatcttctgctgaactttgtccctgtttccgccaacaaacggaggctgcagaatataataagagtgagcatgggaacaaaaggatatatagaagcaaaccatctgtaatgcaaacacatcttctatgcagaaacatcgtgcttaaataactaacctttcctgtaagcatttcaaacaaaaggattcccacactccaccagtcagcagccttatcatgaccacggccctgaacaatttctggagccatgtactcaacagtaccacacattgagtttgatctagtgttttcatcaaattcctttgccaggccaaaatcagtcagcatggcctaaataagacaatgaaaaattccgtaaattcccaaataccaatcagtagataaagtcagagaaggtgaagaaaaatatgtattaaaggatccttacatgtccatcagcatccaacaagatgttctcaggcttcagatctctgtgcataattccattggcatggagatgggctacagcagacacgatttcagcagtgtagatgcgtgcaagctcctccctgacagacaaaaggttgcttaattaaatgttcatgcaaagcgataggaataaacataaaataatgtaatgaaattacctaaacaaaccctgttggtagagctggaagaaaagatggcccccatttatgaagtccaacacaaggtaaagtcggtattttgtctgccaagtaaatactgggtttaaaatttgggacaagactgaaaaatataacatgcatgatagcttgacaacaaagaacacacagagatgataaatgcatacctgaaaggagtacctcagctgtacaacaaaaggatgatcaactttagtcagtatatctctctctgctttcatgtactcagcatggttcttctccaaaatcttgtccttcctcataactttcattgcgtatatttctgaagtacctttctttctcacttgaaagaccttgccaaatgccccttggccaacaagcttcaagacttcaaagtcgtcaagtccaacaacaccattctcattttttgtatcatcaagctcttcatcactcagagcttcttggttgcttttcttttctttagtacactccagaaggtccaatgcgctatcagattcatgcagtgtaagcttactaagtggcaaagattggctaacaagtgaacttggaccaacaagagaatgagatctcttgacaataaccaaagggtcattgtaaatcccctcactggactcagtcaaaggtgcaggactgtctggagtgaggatgctcagatctgtgggagtctggactgccgtaggaccaaaaacatcagaaaaatcgaactcaacgttctcagaaggcacaacatctggagggcccattggcagaagtatcttccctctaaagagcttgggaccttgtgcatgggttgttgtaacagagcttatttcagaggaaaccatcttcaggaacctgagattcagcagtgtagactactgatgccaaggatgttttgcaccacaaattccagctatgccagttcccagactaactaaacaaaagacttatggggcacctctctatggaaggcgccctccacagattcccaacacaacagaagatgcagggctgcgaacaatggccttgaacaagtggaagtttacaaacacaactgggaatcccaggaatcctgggagaaggcagggtgggaagatgccgttgtttcccgatgaacaggaaactctggatgccaatgtgcttcctgaattcatgagaccaacttgtctatggctgcaggtagaacaaaaaatatagttagtttcacaaaatgcagctttgtgcagaagaatgttaaaagggaaaattaataaagaataacatcaggctacgtatgtatattgccttatggctatgtgtgttatgattattgttttcagcacaaattgccatcaaccataattgtaagtggaagaaagttccaagctataatgttttattggaagcaaaatggttctcatttctaggtattatttgctgcaatgtcatgaatcatgatgataagcaagtaatcataagtagaaacaacatgatttgttaaagagaaggtgatcatcaagccagcaaatttgcaccaaaatcactaatttccacaaaaagtacaccaaaataaacaccaacaacacaacatctaatatgaatttcagagcataaagctaacaatagaatcaagttctatacagggaaaaataaattgcaaaagcagtttcttcttaacagtatacagtttgcacaatacgataactatgccaaaaactgtggtaccggtgaaacataagatgctatttccctatctgctgctgacacatcagggtgctacattgatcaaaggagaaaattgtaagtgattctgtaactgtagtcagttgactgtcaaatttagggaatgacggtattccaaatttacccaaaactcccaactatttacaacgacacaaagaaaattaacatataggaaccatcttaagtcagatctggaaagcgaccaccccacctctcttgccgaatcaaaaaagacgcccacttatccacctagaccaatgtcacaagcatcacttaattgggagttttgggtaaatttagttcctatatggtttgcgaactaacgattttttttttgcgagtaagaactcgagaattgaccgcatatgcatgtcacgcagcacatattcatcagacctacgaacccaaaatttctctacccgaaccaaaatcatccatcggacactgaaattgaaattccaccactggaaaaatccccaaatcgactcccagggcgtcacagatccaaagaacataagtccccacagatctaatcatttagatgagcagcgcgcgcgaacatacacgaaatcacaaccccgaaaacgcagaatgctccgtactccggaggccaatttcagatcggagacagcgtaattgaactgaaaacaaaaaaaaaaAGagagAGTAGAAAACAGGGGGGAAAGAAAGAGGCGTCACGTCTCGGGAAACGCAAACGCAAATCCACGGGGAGGAGAGGAGGAAGCTAGGGTTGGGGGCGGGTGGGGAGGGCCTCGCGGCGACGAACCTTCGCTGGTGGgggggggcgtcgttgcggggagcggcggttgaagcggcggcgagtgctcgggctcggctcggcgaactcgtgcggccgcgcggcgaggggccctcttatagcagcggcgcgtgggatgcggggctccgggagcggggaggggacac
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| CDS seq | atggtttcctctgaaataagctctgttacaacaacccatgcacaaggtcccaagctctttagagggaagatacttctgccaatgggccctccagatgttgtgccttctgagaacgttgagttcgatttttctgatgtttttggtcctacggcagtccagactcccacagatctgagcatcctcactccagacagtcctgcacctttgactgagtccagtgaggggatttacaatgaccctttggttattgtcaagagatctcattctcttgttggtccaagttcacttgttagccaatctttgccacttagtaagcttacactgcatgaatctgatagcgcattggaccttctggagtgtactaaagaaaagaaaagcaaccaagaagctctgagtgatgaagagcttgatgatacaaaaaatgagaatggtgttgttggacttgacgactttgaagtcttgaagcttgttggccaaggggcatttggcaaggtctttcaagtgagaaagaaaggtacttcagaaatatacgcaatgaaagttatgaggaaggacaagattttggagaagaaccatgctgagtacatgaaagcagagagagatatactgactaaagttgatcatccttttgttgtacagctgaggtactcctttcagacaaaataccgactttaccttgtgttggacttcataaatgggggccatcttttcttccagctctaccaacagggtttgtttagggaggagcttgcacgcatctacactgctgaaatcgtgtctgctgtagcccatctccatgccaatggaattatgcacagagatctgaagcctgagaacatcttgttggatgctgatggacatgccatgctgactgattttggcctggcaaaggaatttgatgaaaacactagatcaaactcaatgtgtggtactgttgagtacatggctccagaaattgttcagggccgtggtcatgataaggctgctgactggtggagtgtgggaatccttttgtttgaaatgcttacaggaaagcctccgtttgttggcggaaacagggacaaagttcagcagaagattgttaaggagaaaattaagcttccggcatatttatctagcgaagttcattctctgctaaaaggcttactgcacaaagaagctggcaggaggctgggctgtggaccaggcgggagcaatgaaataaagaatcacaagtggttcaagtcagtaaactggaagaagctagactcccgacagattcagccaagcttccgcccaaatgttgctggcaaaacctgcatcgccaactttgacgagtgctggaccagcatgcccgtgctcgactctccagtggccagccctgtcgctgcagatagcaacttcgtgggattcagctatgtgaggccagcgcccttccttcagaggccgagtcctctaggctga
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| Protein seq | MVSSEISSVTTTHAQGPKLFRGKILLPMGPPDVVPSENVEFDFSDVFGPTAVQTPTDLSILTPDSPAPLTESSEGIYNDPLVIVKRSHSLVGPSSLVSQSLPLSKLTLHESDSALDLLECTKEKKSNQEALSDEELDDTKNENGVVGLDDFEVLKLVGQGAFGKVFQVRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYQQGLFREELARIYTAEIVSAVAHLHANGIMHRDLKPENILLDADGHAMLTDFGLAKEFDENTRSNSMCGTVEYMAPEIVQGRGHDKAADWWSVGILLFEMLTGKPPFVGGNRDKVQQKIVKEKIKLPAYLSSEVHSLLKGLLHKEAGRRLGCGPGGSNEIKNHKWFKSVNWKKLDSRQIQPSFRPNVAGKTCIANFDECWTSMPVLDSPVASPVAADSNFVGFSYVRPAPFLQRPSPLG |
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| Function | Serine/threonine-protein kinase AtPK2/AtPK19 [UniProtKB/Swiss-Prot:Q39030] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0016570 | OsKeNa_03g0016570.01 | Chr03 | 12637733 | 12641897 | - | NAM | ||
| CDS seq | atggtttcctctgaaataagctctgttacaacaacccatgcacaaggtcccaagctctttagagggaagatacttctgccaatgggccctccagatgttgtgccttctgagaacgttgagttcgatttttctgatgtttttggtcctacggcagtccagactcccacagatctgagcatcctcactccagacagtcctgcacctttgactgagtccagtgaggggatttacaatgaccctttggttattgtcaagagatctcattctcttgttggtccaagttcacttgttagccaatctttgccacttagtaagcttacactgcatgaatctgatagcgcattggaccttctggagtgtactaaagaaaagaaaagcaaccaagaagctctgagtgatgaagagcttgatgatacaaaaaatgagaatggtgttgttggacttgacgactttgaagtcttgaagcttgttggccaaggggcatttggcaaggtctttcaagtgagaaagaaaggtacttcagaaatatacgcaatgaaagttatgaggaaggacaagattttggagaagaaccatgctgagtacatgaaagcagagagagatatactgactaaagttgatcatccttttgttgtacagctgaggtactcctttcagacaaaataccgactttaccttgtgttggacttcataaatgggggccatcttttcttccagctctaccaacagggtttgtttagggaggagcttgcacgcatctacactgctgaaatcgtgtctgctgtagcccatctccatgccaatggaattatgcacagagatctgaagcctgagaacatcttgttggatgctgatggacatgccatgctgactgattttggcctggcaaaggaatttgatgaaaacactagatcaaactcaatgtgtggtactgttgagtacatggctccagaaattgttcagggccgtggtcatgataaggctgctgactggtggagtgtgggaatccttttgtttgaaatgcttacaggaaagcctccgtttgttggcggaaacagggacaaagttcagcagaagattgttaaggagaaaattaagcttccggcatatttatctagcgaagttcattctctgctaaaaggcttactgcacaaagaagctggcaggaggctgggctgtggaccaggcgggagcaatgaaataaagaatcacaagtggttcaagtcagtaaactggaagaagctagactcccgacagattcagccaagcttccgcccaaatgttgctggcaaaacctgcatcgccaactttgacgagtgctggaccagcatgcccgtgctcgactctccagtggccagccctgtcgctgcagatagcaacttcgtgggattcagctatgtgaggccagcgcccttccttcagaggccgagtcctctaggctga
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| Protein seq | MVSSEISSVTTTHAQGPKLFRGKILLPMGPPDVVPSENVEFDFSDVFGPTAVQTPTDLSILTPDSPAPLTESSEGIYNDPLVIVKRSHSLVGPSSLVSQSLPLSKLTLHESDSALDLLECTKEKKSNQEALSDEELDDTKNENGVVGLDDFEVLKLVGQGAFGKVFQVRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYQQGLFREELARIYTAEIVSAVAHLHANGIMHRDLKPENILLDADGHAMLTDFGLAKEFDENTRSNSMCGTVEYMAPEIVQGRGHDKAADWWSVGILLFEMLTGKPPFVGGNRDKVQQKIVKEKIKLPAYLSSEVHSLLKGLLHKEAGRRLGCGPGGSNEIKNHKWFKSVNWKKLDSRQIQPSFRPNVAGKTCIANFDECWTSMPVLDSPVASPVAADSNFVGFSYVRPAPFLQRPSPLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.108865 | 3.887019 | 2.926001 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0333500 | RBH | 0.0 | 0.0 | 1.291924 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21620 | RBH | 0.319771 | 0.508099 | 1.641197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0334000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016730 | RBH | 0.327544 | 22.028206 | 7.219740 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027900 | RBH | 0.190612 | 3.533161 | 3.173988 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016590 | RBH | 0.000000 | 14.344646 | 13.322151 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016590 | RBH | 0.0 | 0.455002 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016360 | RBH | 0.000000 | 10.187994 | 17.107105 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0203500 | RBH | 6.282016 | 11.014469 | 28.5141325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016240 | RBH | 0.000000 | 1.505291 | 2.629375 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0207900 | RBH | 10.8437855 | 16.8915355 | 44.5555765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016470 | RBH | 0.124873 | 0.119535 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016500 | RBH | 0.209771 | 21.547564 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016540 | RBH | 2.029057 | 13.569568 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016420 | RBH | 0.238147 | 1.992219 | 2.734656 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016330 | RBH | 0.481024 | 13.707436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016290 | RBH | 0.100698 | 5.875459 | 4.764606 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016240 | RBH | 0.688492 | 16.936178 | 10.787181 |
