Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0038280 | OGI:02097840 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:35144283-35146196 | ||||||||
| Gene Symbol | OsFbox070, OsFbox70, Os_F0151, OsFbox094, OsFbox94, Os_F0336 | ||||||||||
| DNA seq | aggagatggccccaacacgtgcgatggggtgctccagaaggatccatgtggtggtcatagacacaggagacaggctaagctcgttaccagatgacatccttcacaccatcatgtcgttcctcccggcgtggcaggccgtgcagacgtgcgtgctgtcgcggaggtgggagcgcctctggtgctccatgccatgtctcaacattgatcagcaggagttcgaggattgtggaagggacagggaaggtggcgggtttgaggaattcgttaacaacatgttgatgtttcacagtgccccatcgttggatatgtttaagtttcatgttacacacaattacgactataaagtagtcgaccgatggattcgccgtggaatcaagtgctgccctgcagtggtggatatatgtaattcttccaatgctcacatgtatgaactacctaatttaggttccggtgctcgtcgcctcaagaagttgcatcttgttgtgattgctttggtcaagggtttcacgcagcacctcccttctgcctgtcctgtccttgaagacttggagcttgacaaatgctgtcttgaccatccggaaatcacatctctctctctctgaagaatttgatactcattggccctgtttagatgggactaaaacaacttttagtccctatcacatcggatgtttgaaaattaattataaatattaaacgtagactattaataaaacccatccataatcttggactaatttgcgagacgaatctaatgagcctaattaatccatgattagcctatgtgatgctacagtaaacattctctaattatagattaattaggcttaaaaaatttgtctgtgaattagcttttatttatgtaattagttttgtaagtagtctatatttaatactctaaattagtgtctaaagacagggactaaagttaagtcctagatgtaaacaccacctgattgtacaacttactgtggtacagtgctgaccatcacaactccggctctcgtttctgcatcactttgtttaagatatcgcccccccccccccccccggggggactagaagaaacttaccagaaggaccatgcaagattcttcgcaacgtaagcaacttgagaaatttagagctatctgggtcaaaaacattggtatgtttttttttcctgttagtattagggcattgtttgacatactgctcattctcatgaattgtcgattagtacaaattattaaactgtatttactatttagtacctatattaatttctataaactcttatgcttcatttaagaagggaactgatgttctatatctgtgatactgtgctaagaatcaacgtgtacatctggtacaagcaaaacatagtaaatttacatattgctaatgaattcaagaggataaaaacattccttaaaaatgatgataactatatgctgtttctatattcttctatgtagtcggtacttcatggagtgttggatattttcccaacattttataatctcagaaccttgctgttcaatggatgcgatctgagtgacgacttccagatactaggatgctttctgaacaatgcccctagattggagaagcttactctgcaatactgcaaggtactttgcgttttccttaatctaccatgcaaatctcatatttttgctatactatcttctgactacttgcatgagcactgtttattgccaaaagcttccagaaggttccaggaaaaggaatagaacggaaaatccgaagaggataactataaaatgtcaggacacgctaactttgcggtgtccaaacttgaagttgactgaaatcatgtacggagaagatgatgttcaccagctgtttggccttttgtctggcatttggaggaacctacagaagactaccatcgtccttacaaaagcttga
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| CDS seq | atggccccaacacgtgcgatggggtgctccagaaggatccatgtggtggtcatagacacaggagacaggctaagctcgttaccagatgacatccttcacaccatcatgtcgttcctcccggcgtggcaggccgtgcagacgtgcgtgctgtcgcggaggtgggagcgcctctggtgctccatgccatgtctcaacattgatcagcaggagttcgaggattgtggaagggacagggaaggtggcgggtttgaggaattcgttaacaacatgttgatgtttcacagtgccccatcgttggatatgtttaagtttcatgttacacacaattacgactataaagtagtcgaccgatggattcgccgtggaatcaagtgctgccctgcagtggtggatatatgtaattcttccaatgctcacatgtatgaactacctaatttaggttccggtgctcgtcgcctcaagaagttgcatcttgttgtgattgctttggtcaagggtttcacgcagcacctcccttctgcctgtccttcggtacttcatggagtgttggatattttcccaacattttataatctcagaaccttgctgttcaatggatgcgatctgagtgacgacttccagatactaggatgctttctgaacaatgcccctagattggagaagcttactctgcaatactgcaagcttccagaaggttccaggaaaaggaatagaacggaaaatccgaagaggataactataaaatgtcaggacacgctaactttgcggtgtccaaacttgaagttgactgaaatcatgtacggagaagatgatgttcaccagctgtttggccttttgtctggcatttggaggaacctacagaagactaccatcgtccttacaaaagcttga
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| Protein seq | MAPTRAMGCSRRIHVVVIDTGDRLSSLPDDILHTIMSFLPAWQAVQTCVLSRRWERLWCSMPCLNIDQQEFEDCGRDREGGGFEEFVNNMLMFHSAPSLDMFKFHVTHNYDYKVVDRWIRRGIKCCPAVVDICNSSNAHMYELPNLGSGARRLKKLHLVVIALVKGFTQHLPSACPSVLHGVLDIFPTFYNLRTLLFNGCDLSDDFQILGCFLNNAPRLEKLTLQYCKLPEGSRKRNRTENPKRITIKCQDTLTLRCPNLKLTEIMYGEDDVHQLFGLLSGIWRNLQKTTIVLTKA |
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| Function | Putative F-box/LRR-repeat protein At3g28410 [UniProtKB/Swiss-Prot:Q9LSJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0038280 | OsKeNa_02g0038280.01 | Chr02 | 35144283 | 35146196 | + | NAM | ||
| CDS seq | atggccccaacacgtgcgatggggtgctccagaaggatccatgtggtggtcatagacacaggagacaggctaagctcgttaccagatgacatccttcacaccatcatgtcgttcctcccggcgtggcaggccgtgcagacgtgcgtgctgtcgcggaggtgggagcgcctctggtgctccatgccatgtctcaacattgatcagcaggagttcgaggattgtggaagggacagggaaggtggcgggtttgaggaattcgttaacaacatgttgatgtttcacagtgccccatcgttggatatgtttaagtttcatgttacacacaattacgactataaagtagtcgaccgatggattcgccgtggaatcaagtgctgccctgcagtggtggatatatgtaattcttccaatgctcacatgtatgaactacctaatttaggttccggtgctcgtcgcctcaagaagttgcatcttgttgtgattgctttggtcaagggtttcacgcagcacctcccttctgcctgtccttcggtacttcatggagtgttggatattttcccaacattttataatctcagaaccttgctgttcaatggatgcgatctgagtgacgacttccagatactaggatgctttctgaacaatgcccctagattggagaagcttactctgcaatactgcaagcttccagaaggttccaggaaaaggaatagaacggaaaatccgaagaggataactataaaatgtcaggacacgctaactttgcggtgtccaaacttgaagttgactgaaatcatgtacggagaagatgatgttcaccagctgtttggccttttgtctggcatttggaggaacctacagaagactaccatcgtccttacaaaagcttga
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| Protein seq | MAPTRAMGCSRRIHVVVIDTGDRLSSLPDDILHTIMSFLPAWQAVQTCVLSRRWERLWCSMPCLNIDQQEFEDCGRDREGGGFEEFVNNMLMFHSAPSLDMFKFHVTHNYDYKVVDRWIRRGIKCCPAVVDICNSSNAHMYELPNLGSGARRLKKLHLVVIALVKGFTQHLPSACPSVLHGVLDIFPTFYNLRTLLFNGCDLSDDFQILGCFLNNAPRLEKLTLQYCKLPEGSRKRNRTENPKRITIKCQDTLTLRCPNLKLTEIMYGEDDVHQLFGLLSGIWRNLQKTTIVLTKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0178200 | SBH | 0.325598 | 0.140267 | 0.334296 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54550 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0178200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038240 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0014460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0037760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037860 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0567300 | SBH | 7.1132925 | 22.490827 | 27.8820405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0598300 | SBH | 0.0004005 | 0.0272865 | 0.072655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0037750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038050 | RBH | 0.0 | 0.0 | 0.0 |
