Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0178200 | OGI:02013130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:4320498-4324030 | ||||||||
| Gene Symbol | OsFbox069, OsFbox69, Os_F0227, OsFbox070, OsFbox70, Os_F0151 | ||||||||||
| DNA seq | CGGCCTCAGACAAAACCCCCCTCCTCCACGGCCGTCGCCACCGTCGCCATGTCCTTGCCACGCCTCGCCGCCTTCTACTGGCCGCGCCTCCGCGCCGCCGACCGGGACGACGTCAGAGCCGCCGGGATGGGCCACGGCCTGGACCCGGAGGGGATCACGATCACCCCGCTCATGGACATGGTGCTCGGCTTCCTCTACCAGTCCATCCCCAGGCCGCCCGTCTCCGCCTCCGCCTCCCTCTCCGCCGCCGCCGCCACCGGCGACGGCGGTGGCGACGACCGCATCAGCCTCCTCCCCGACGACATCCTCCGCGCCGTCGTCTCCCGCCTCCCCGCCAAGGACGGCGCGCGCACCGCCGTGCTCTCCTCCCGCTGGCGCCGCCTCTGGCGCTCCACCCCGCTCGTCCTCGTCGACACCCACCTCCTCCCGCGGCGGGGGGGAGGCCGCCCCGCGCGCGCGGGCGCCGCCTCGCGCGCCGTCGCCGACGCCGTCTCCCGCGTCCTGGAGGCGCACCCGGGGCCCTTCCCCTTCGTCAGCCTCTCCTGCAGCTTCATCGGCGACGACGCGCAGCGCGGCGTGGCGGCGCGGTGGCTCGACCTCCTCGCCGCCAAGGGCGTCGAGCACCTCGTCTTCGTCAACCGCCCCTGCCCGCTCCCCGGCGTGACCCTCCCCGCCGCGCTCTTCAACTGCTCCTCACTCCGCCGCCTCTACATCGGCTCATGGGAGCTCCCCGACACCGCCTCCATCCCTCTCCCTCGCGCCGCCGCCGCCGCCGCCTTCCCCAACCTGCGGGAGCTCGTCCTCGGGTGCGTGGTCATGGTTGACGGCGACCTCCCCTTTCTGCTCGCCGCGAGCCCTGCTCTGGAGACCCTCGCCGTGTTCGGGATCCTCAACACGCTGCGGGCGCGCCTCTCCAGCGGCAGCCTACGGTGCGCGCAGTTCTGCTTGTCGTTCATGGAGGAAGTGGCCGTGCTGGATGCTCCGCACCTCGAGCGGCTATTCCTCTGGAGAAACATCAAGAACACCAGGGTCAAGATTGGCCATGCTCCTCAGCTTCGTATGCTTGGTTACCTGCAGCCAGGAGTGCACCAACTGGAGATCGGTAACACCATCATCAAGGTGAAGATCAAGCCTGATTGAAAGTAGATAGACCATGTTTATTTTGGGCAATGGATGAGTTAAATGCCTGATGAAATGTGTAATCAATCTGTTCCTGGGTGCATATTGCAGGCAAGAACAATTGTGAGGCCAGGCACCACTGTCCCGAGCGTCAATATGCTGGCCTTGCACCTGCATTTCGGAGTTCGGAATGAAGTGAAAATGCTGCCCAGCTTCCTCAGATGCTTTCCCAACGTTGAGACGCTGTGTATCGAGGTGGAGTCAAATCCTCCTTTCCCTGCACTTGTTGTTTCTTCCATCATCATTACTGCATTGCATCAGATCGTTGCCTCTGTGCTTCATAGTGCATTACTAGTATATGGTATTTATCAGTGTCTTTTACAAAGCAGTAAAAATTGATAATTACTTATCTGACTAAGTGGAAGAGTGGCATAAGATCACAATTAGCTACTATATGTAATGTGAACACCTCGTGAATGATTAATTGGCCCAATAATCTGTTGTACTAGTGGTAGGCCCCATCCATTGCTCCAAGGTGCATGTAAAAGATGTTGATTGTGCAAATTGTTTGCAGTCATCTATCAAAATTTAAGTATAGCAACCATGAGGATCACTGCATGTTCCATCGACTAAATTGATTTTTAATATGTTTCTTACAACATCATGTACTAGCTTCCAGTGACAATTGATACATGAGCAATTATGAAAAATGCACTACTTATTTTTATATGTTAACAATGGAAACCAGCTCACCAATTGGGCCAACTTTGTCAACACATATTGCCCCAAAACTTTCTCTTATGCTTCATCAATACTAGAGAAATGTCTCGGCATTTATTTTGGAGAGCTACTATTAGGCTCAAAGCAGTAAAGCACATCTATGGTCCTTAATATTACTATCTATGTTGATATTTTACAGGGCTTATCTCATTTTAAAAAGTATTTAAGGTTAAAGTTTGACCATTAATTGCTTGTAACTTAACAGTTATAAAACCAACATTTTGTGAAAACACTTTGAAAATGAATCTATTGTGCTAATTTCTATACACTAAATGTACTTCTAAATTTGCTTCTAGTTTGACTAATTGTTGGTTAAAATATATGTACAATTAGACCTTTTGAAATCAAAATACACCTCATAAAAATCGAGGGAGTATGCAGTTGTCTATTCTCGCATGATAATTATGCACAAACTTAAATCTAACACAGAAAATAGAGCACCACGTATTCGGAGCCTTTGGAAGAAATAGTTACATACTTGGCATCATCAATGATTCATTACATTTGGAACATCGTTCTAGAACAGACCAAAGTTTCGCAACTTCTTGCAGTGGTGAAATCAACAAATTAATTAATTTTACGGGGCAAATAATATACCTATGCACTGTTGACATTGATCAGTGGTTATATGCTTGAGTAGGCTTTCGCAAATATTCACTCTAGTTTGTCGACAAAACGTTATTTGACTATATGAGTAAAAAAGTTTCATTGACCATACAAATTTTCCAGTATCTTTAGGCCTCTGATCACATCAGTTTTATGACCTTACGTCAATGCAGCTATTTCTTGCCATATTCTATAAACCAATTGCAAGCTTTAAATTTTGTGAAAAAATGAATGTTTAGCTTGGTTGAAAGCTTCAATTTATTGTTGTGTCATTTGAAGGAAATTACTGTATGTATTGTCTATTCGGATTAGCTTTTTAAGCAATGATTATGCCAAAATTATGAGTTAAGTATATCGAGGAGTGTCATCATCAAGGACATAAACATATTAGCCTTGCATTCTTTAATCACTCGGCGGTACCTTACCTGCTTGACGACCATATACCTCTTTTACTACTCTGCTAGATATAGGCATATAGCTGATTTTGCATTGGTATTGATTTTCAGTCTGAAGAAGCACCTGGACGCACTAGCAACATTGATGTCAACTTCTGGCAGGAGGCCGGCCCCATTGAATGTGTCCAGTCACACCTTAAGATGATGATCTTACGGGAGTTCCAAGGGGAGGAAAGCGAGCTTTCCTTCCTCAAGTTCGTCGGCGAGAATGCTCGAGTGCTGGAGAAGATGGTGATTGTGATGAAACTTGGAAGGTACTCTGCACCGGAAGAGGTGGCAGCCAAAGTGATGGATCTGCAATCTGCTAAATGGGCAAGGGAAGGCAACAAACTGGGGTTCTTGATCAGTAGACTTCGTGCAGGGGGTAGCGCTTGGAGCCTCCGAGATGGAACTGATCTGTCATGTGATGATCCTTTTATGTGCCTCTGAATTCAGAGCTCAAATGAGGCTGGCTACGTACATATTTCGACACCCAAGATTTCACCTGCAGTAGGCTAGTAGCTGTGGTGACTACTCCTAGATGCAAGGCACTGATTTAGATTGTTGTGCTGTCTTTTGGGTTGGACAGGATTC
More
|
||||||||||
| CDS seq | ATGTCCTTGCCACGCCTCGCCGCCTTCTACTGGCCGCGCCTCCGCGCCGCCGACCGGGACGACGTCAGAGCCGCCGGGATGGGCCACGGCCTGGACCCGGAGGGGATCACGATCACCCCGCTCATGGACATGGTGCTCGGCTTCCTCTACCAGTCCATCCCCAGGCCGCCCGTCTCCGCCTCCGCCTCCCTCTCCGCCGCCGCCGCCACCGGCGACGGCGGTGGCGACGACCGCATCAGCCTCCTCCCCGACGACATCCTCCGCGCCGTCGTCTCCCGCCTCCCCGCCAAGGACGGCGCGCGCACCGCCGTGCTCTCCTCCCGCTGGCGCCGCCTCTGGCGCTCCACCCCGCTCGTCCTCGTCGACACCCACCTCCTCCCGCGGCGGGGGGGAGGCCGCCCCGCGCGCGCGGGCGCCGCCTCGCGCGCCGTCGCCGACGCCGTCTCCCGCGTCCTGGAGGCGCACCCGGGGCCCTTCCCCTTCGTCAGCCTCTCCTGCAGCTTCATCGGCGACGACGCGCAGCGCGGCGTGGCGGCGCGGTGGCTCGACCTCCTCGCCGCCAAGGGCGTCGAGCACCTCGTCTTCGTCAACCGCCCCTGCCCGCTCCCCGGCGTGACCCTCCCCGCCGCGCTCTTCAACTGCTCCTCACTCCGCCGCCTCTACATCGGCTCATGGGAGCTCCCCGACACCGCCTCCATCCCTCTCCCTCGCGCCGCCGCCGCCGCCGCCTTCCCCAACCTGCGGGAGCTCGTCCTCGGGTGCGTGGTCATGGTTGACGGCGACCTCCCCTTTCTGCTCGCCGCGAGCCCTGCTCTGGAGACCCTCGCCGTGTTCGGGATCCTCAACACGCTGCGGGCGCGCCTCTCCAGCGGCAGCCTACGGTGCGCGCAGTTCTGCTTGTCGTTCATGGAGGAAGTGGCCGTGCTGGATGCTCCGCACCTCGAGCGGCTATTCCTCTGGAGAAACATCAAGAACACCAGGGTCAAGATTGGCCATGCTCCTCAGCTTCGTATGCTTGGTTACCTGCAGCCAGGAGTGCACCAACTGGAGATCGGTAACACCATCATCAAGGCAAGAACAATTGTGAGGCCAGGCACCACTGTCCCGAGCGTCAATATGCTGGCCTTGCACCTGCATTTCGGAGTTCGGAATGAAGTGAAAATGCTGCCCAGCTTCCTCAGATGCTTTCCCAACGTTGAGACGCTGTGTATCGAGTCTGAAGAAGCACCTGGACGCACTAGCAACATTGATGTCAACTTCTGGCAGGAGGCCGGCCCCATTGAATGTGTCCAGTCACACCTTAAGATGATGATCTTACGGGAGTTCCAAGGGGAGGAAAGCGAGCTTTCCTTCCTCAAGTTCGTCGGCGAGAATGCTCGAGTGCTGGAGAAGATGGTGATTGTGATGAAACTTGGAAGGTACTCTGCACCGGAAGAGGTGGCAGCCAAAGTGATGGATCTGCAATCTGCTAAATGGGCAAGGGAAGGCAACAAACTGGGGTTCTTGATCAGTAGACTTCGTGCAGGGGGTAGCGCTTGGAGCCTCCGAGATGGAACTGATCTGTCATGTGATGATCCTTTTATGTGCCTCTGA
More
|
||||||||||
| Protein seq | MSLPRLAAFYWPRLRAADRDDVRAAGMGHGLDPEGITITPLMDMVLGFLYQSIPRPPVSASASLSAAAATGDGGGDDRISLLPDDILRAVVSRLPAKDGARTAVLSSRWRRLWRSTPLVLVDTHLLPRRGGGRPARAGAASRAVADAVSRVLEAHPGPFPFVSLSCSFIGDDAQRGVAARWLDLLAAKGVEHLVFVNRPCPLPGVTLPAALFNCSSLRRLYIGSWELPDTASIPLPRAAAAAAFPNLRELVLGCVVMVDGDLPFLLAASPALETLAVFGILNTLRARLSSGSLRCAQFCLSFMEEVAVLDAPHLERLFLWRNIKNTRVKIGHAPQLRMLGYLQPGVHQLEIGNTIIKARTIVRPGTTVPSVNMLALHLHFGVRNEVKMLPSFLRCFPNVETLCIESEEAPGRTSNIDVNFWQEAGPIECVQSHLKMMILREFQGEESELSFLKFVGENARVLEKMVIVMKLGRYSAPEEVAAKVMDLQSAKWAREGNKLGFLISRLRAGGSAWSLRDGTDLSCDDPFMCL |
||||||||||
| Function | F-box/LRR-repeat protein At3g26922 [UniProtKB/Swiss-Prot:Q9LJF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0178200 | OsNip_02t0178200-00 | Chr02 | 4320498 | 4324030 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCCTTGCCACGCCTCGCCGCCTTCTACTGGCCGCGCCTCCGCGCCGCCGACCGGGACGACGTCAGAGCCGCCGGGATGGGCCACGGCCTGGACCCGGAGGGGATCACGATCACCCCGCTCATGGACATGGTGCTCGGCTTCCTCTACCAGTCCATCCCCAGGCCGCCCGTCTCCGCCTCCGCCTCCCTCTCCGCCGCCGCCGCCACCGGCGACGGCGGTGGCGACGACCGCATCAGCCTCCTCCCCGACGACATCCTCCGCGCCGTCGTCTCCCGCCTCCCCGCCAAGGACGGCGCGCGCACCGCCGTGCTCTCCTCCCGCTGGCGCCGCCTCTGGCGCTCCACCCCGCTCGTCCTCGTCGACACCCACCTCCTCCCGCGGCGGGGGGGAGGCCGCCCCGCGCGCGCGGGCGCCGCCTCGCGCGCCGTCGCCGACGCCGTCTCCCGCGTCCTGGAGGCGCACCCGGGGCCCTTCCCCTTCGTCAGCCTCTCCTGCAGCTTCATCGGCGACGACGCGCAGCGCGGCGTGGCGGCGCGGTGGCTCGACCTCCTCGCCGCCAAGGGCGTCGAGCACCTCGTCTTCGTCAACCGCCCCTGCCCGCTCCCCGGCGTGACCCTCCCCGCCGCGCTCTTCAACTGCTCCTCACTCCGCCGCCTCTACATCGGCTCATGGGAGCTCCCCGACACCGCCTCCATCCCTCTCCCTCGCGCCGCCGCCGCCGCCGCCTTCCCCAACCTGCGGGAGCTCGTCCTCGGGTGCGTGGTCATGGTTGACGGCGACCTCCCCTTTCTGCTCGCCGCGAGCCCTGCTCTGGAGACCCTCGCCGTGTTCGGGATCCTCAACACGCTGCGGGCGCGCCTCTCCAGCGGCAGCCTACGGTGCGCGCAGTTCTGCTTGTCGTTCATGGAGGAAGTGGCCGTGCTGGATGCTCCGCACCTCGAGCGGCTATTCCTCTGGAGAAACATCAAGAACACCAGGGTCAAGATTGGCCATGCTCCTCAGCTTCGTATGCTTGGTTACCTGCAGCCAGGAGTGCACCAACTGGAGATCGGTAACACCATCATCAAGGCAAGAACAATTGTGAGGCCAGGCACCACTGTCCCGAGCGTCAATATGCTGGCCTTGCACCTGCATTTCGGAGTTCGGAATGAAGTGAAAATGCTGCCCAGCTTCCTCAGATGCTTTCCCAACGTTGAGACGCTGTGTATCGAGTCTGAAGAAGCACCTGGACGCACTAGCAACATTGATGTCAACTTCTGGCAGGAGGCCGGCCCCATTGAATGTGTCCAGTCACACCTTAAGATGATGATCTTACGGGAGTTCCAAGGGGAGGAAAGCGAGCTTTCCTTCCTCAAGTTCGTCGGCGAGAATGCTCGAGTGCTGGAGAAGATGGTGATTGTGATGAAACTTGGAAGGTACTCTGCACCGGAAGAGGTGGCAGCCAAAGTGATGGATCTGCAATCTGCTAAATGGGCAAGGGAAGGCAACAAACTGGGGTTCTTGATCAGTAGACTTCGTGCAGGGGGTAGCGCTTGGAGCCTCCGAGATGGAACTGATCTGTCATGTGATGATCCTTTTATGTGCCTCTGA
More
|
|||||||
| Protein seq | MSLPRLAAFYWPRLRAADRDDVRAAGMGHGLDPEGITITPLMDMVLGFLYQSIPRPPVSASASLSAAAATGDGGGDDRISLLPDDILRAVVSRLPAKDGARTAVLSSRWRRLWRSTPLVLVDTHLLPRRGGGRPARAGAASRAVADAVSRVLEAHPGPFPFVSLSCSFIGDDAQRGVAARWLDLLAAKGVEHLVFVNRPCPLPGVTLPAALFNCSSLRRLYIGSWELPDTASIPLPRAAAAAAFPNLRELVLGCVVMVDGDLPFLLAASPALETLAVFGILNTLRARLSSGSLRCAQFCLSFMEEVAVLDAPHLERLFLWRNIKNTRVKIGHAPQLRMLGYLQPGVHQLEIGNTIIKARTIVRPGTTVPSVNMLALHLHFGVRNEVKMLPSFLRCFPNVETLCIESEEAPGRTSNIDVNFWQEAGPIECVQSHLKMMILREFQGEESELSFLKFVGENARVLEKMVIVMKLGRYSAPEEVAAKVMDLQSAKWAREGNKLGFLISRLRAGGSAWSLRDGTDLSCDDPFMCL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.325598 | 0.140267 | 0.334296 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08160 | RBH | 0.199003 | 0.085265 | 0.155551 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0178200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006020 | RBH | 0.0 | 0.0 | 0.911218 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006130 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005940 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005870 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005900 | RBH | 2.241171 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0073800 | RBH | 0.2396985 | 0.8301975 | 0.5513675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0075600 | RBH | 0.123129 | 0.590933 | 0.7073565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006030 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006000 | RBH | 0.0 | 0.0 | 0.0 |
