Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_02g0035730 OGI:02092750 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr02:33192495-33196144
Gene Symbol RPA1A, OsRPA70a, OsRPA1a, RPA1a
DNA seq

gtaaaacagatgttcgattgcatggaagagcacaagagatttcttagtcgcgacagagtaaggctttgcaggcatgtacaaaccaaaactaagggagaaattgcactgcagctagaaggcaatcatttgatcgagaaaaaggtataaaagctgatacattaagtggcgttaatattaaagtaccggcacaaaaatggaaatatcagcactaatctggatataaactattaaagcactaatctggatataaactattaagtggcgttaatattaaagtaccggcacaaaaatcgagcaggagggcgagggctatgggcactgcaacacctcacctcgctcacctcaccacgcacgagcgagcagctgatagagtagcacagtctgctaatgtagcgccgaggacttggagatcaaatccagcagaaatttactttcacccgaaggatcaaccttctccactttgaccgcggtgttcttcactttgcgctcatcgccgtatgattcttctttgaccttcagcctgagcagatattcctgaaacaagcaattgagcatggtgtctgcaaaccgagggtcctcgcgctccttaagtgcgttgagctctgttgccgagcagccaagcaactcctgcccagcctcctggaatgctgtcacccaagctgttcccgagtgatcttgaatctgaaactgcaggagatacctgtagtcgcactcttcaaactccctatcgcatttgtcacaggtccaattgccattagtactctttgtcaccttcttattgcactgcctgtcgccaatcatgttagggcaagctgtgtagaagaaggactcattcttgaagaatataacggtggctttcaccgtaatccagtcaggtttgtcccccattccaagaccttcatccttgatctgtgctactgtctttcggatctcattccttgatgctccaggcgtgatatctctggatatggactgagtagaagcatctcttcctccactatcaaaccattgcctgagactatgagcttcagcagaatcagggttgatgaagagctgagttgaagaaattgtgccgacagacttgccactgaaatcactcacttttcctgctttgacagccagcacaggaaagatcccacgttcaaccattccttgaagctgtgagccttctctgttgcaaaagtcaccccacatggttacctcaacacttcgaccagacatatccttcaggttcatagttcttttctgagtttccatgccatttttcctctgtattgtggtgcaaggattgaccgatgtaacaacacctatgatgtcaaggatagcattgttctgggcatcctcaatttcattgatcggtctgaagtcaaaccgctgggtgggaatggaactgttctcatcaggacaaagatccacagttgatccattctccaataaaatctcccactcattgttaagatggttatagttcttctgtgcaggtctcaagtttcctcttgataccacatagaccttaccaacttccacaacttcatagaatcgatcaagaagagcattgaagcatgtcacccgtatctctcccccatcagaatcaagcaagtcaaaagagaatactttcccatcacctttagcattatggtatcggcggatatctcccttggcagtaactctagccttgatagcccagcggccttgataaggatttaaagcagatatggggattattctagcaggggcttcatttttcatgattgctccatggtttttgtaattaggtgcagggcgataagatggctggactgttggttggaagaccggaactttgtcactgggcctagtggcaaagttagaggagtttcctgccatcgaattttggaacaatggaacattgtcactaggctttgtggttgtatttgatgagttccctgccatcaaaccatattgaggtgctccgttaaattgctctactcttgtcggatttgggataggagatccagtttctgaaagcgctgtaggattcccaattatctcacactccgaaacaagaacttccaggttcagaatgacaataatcctacaggtattgcaacaagtcagctcaaccaacaaaaaacaattcttgattctgctctatcaaccagtagatcagttgaaaataagaatgcaaaaggctcagaatatgatgattcacactgctacatgaatactatgtttaattacaacaccttttggtcagaaacttatcttcacttttgcatttgtcgccttgccaacatgatttgaatggacacaactatgcttccaattacttatgaaccagatacaaaagaaatgcatttagtacggtgttgtgttgaactgaatggctacagctaaaagataaaaaatacttagtacttagacccaaactgttcacagcaccagacagttgcagcattaatgctgatcaatatctaactacattggccaaatcgatgcacccaaacatggcgatttgttggctagagaaaaaaaggcacacaactaaattagtgaactaaatcagacaacactgtaaagtgtgtagtagtcaaactgaccatattaccttcatcgtttgacatgctacctgccagaaatggcgaacaccaaaggctacccaagcacatatatcacactattttgtaatcgttaatactaatgccagccaattaactactgagtatcgacaaacaccaatttgtgtcacaggacagccttagttaccactgattagtactgcaataccgaggcctctttctgacaataataattcaaatcagaattaaaatcaattggacaaatggttaacaagcaccgatcaaatgatgtcataaacaaaaccattgtcagaaaaattttgatgcacctctactagtatctagtaggaaacatgaagctcatcgacaatttaccaacagaatggcaagtactaagtattaatttaaattgcaaactagctgaaagcgggaatctaaaccacacgcagactgacacacataaaaccaggggcaagcatgaaccctaaaacgaaacgggccaaaaatcgcacgcaatcacacatcgatcagaggcaggggaatgggggggaaagtggaggaggaggcaacaaaaccttctggggccgacttcgttgatgacgtactcgctgagctgcacaatgctgccgcgtcggagggcgccggatcgggcgtggtcgctgagctgcgcggcgaagagcgcggaggacgcggcggtgccgtcggagaccaccgcccggaacctctccccgcgcgtgacgcccgcgccgttgacctggacgccccgcagctcgacgatctgcagcaccggcttcaggttcgtgtcccccgccagcgccgccgccacgccgttcggcgtcagcctcgccatcgccatcgccacccgccgccctcctccacctccacctccacctcctcctccccctctccgcttcaattcaatccgacacggagaggcgcggattaacgggaaaacccccgccctggatggttggaacttggattgggacgaggaagaagggaatggttcgaggctttgagctctcgaaaattcgaaaagatgcgaggggtgaattagaaatggtccgctaattaatgagagaggcggttgat

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CDS seq

atggcgatggcgaggctgacgccgaacggcgtggcggcggcgctggcgggggacacgaacctgaagccggtgctgcagatcgtcgagctgcggggcgtccaggtcaacggcgcgggcgtcacgcgcggggagaggttccgggcggtggtctccgacggcaccgccgcgtcctccgcgctcttcgccgcgcagctcagcgaccacgcccgatccggcgccctccgacgcggcagcattgtgcagctcagcgagtacgtcatcaacgaagtcggccccagaaggattattgtcattctgaacctggaagttcttgtttcggagtgtgagataattgggaatcctacagcgctttcagaaactggatctcctatcccaaatccgacaagagtagagcaatttaacggagcacctcaatatggtttgatggcagggaactcatcaaatacaaccacaaagcctagtgacaatgttccattgttccaaaattcgatggcaggaaactcctctaactttgccactaggcccagtgacaaagttccggtcttccaaccaacagtccagccatcttatcgccctgcacctaattacaaaaaccatggagcaatcatgaaaaatgaagcccctgctagaataatccccatatctgctttaaatccttatcaaggccgctgggctatcaaggctagagttactgccaagggagatatccgccgataccataatgctaaaggtgatgggaaagtattctcttttgacttgcttgattctgatgggggagagatacgggtgacatgcttcaatgctcttcttgatcgattctatgaagttgtggaagttggtaaggtctatgtggtatcaagaggaaacttgagacctgcacagaagaactataaccatcttaacaatgagtgggagattttattggagaatggatcaactgtggatctttgtcctgatgagaacagttccattcccacccagcggtttgacttcagaccgatcaatgaaattgaggatgcccagaacaatgctatccttgacatcataggtgttgttacatcggtcaatccttgcaccacaatacagaggaaaaatggcatggaaactcagaaaagaactatgaacctgaaggatatgtctggtcgaagtgttgaggtaaccatgtggggtgacttttgcaacagagaaggctcacagcttcaaggaatggttgaacgtgggatctttcctgtgctggctgtcaaagcaggaaaagtgagtgatttcagtggcaagtctgtcggcacaatttcttcaactcagctcttcatcaaccctgattctgctgaagctcatagtctcaggcaatggtttgatagtggaggaagagatgcttctactcagtccatatccagagatatcacgcctggagcatcaaggaatgagatccgaaagacagtagcacagatcaaggatgaaggtcttggaatgggggacaaacctgactggattacggtgaaagccaccgttatattcttcaagaatgagtccttcttctacacagcttgccctaacatgattggcgacaggcagtgcaataagaaggtgacaaagagtactaatggcaattggacctgtgacaaatgcgatagggagtttgaagagtgcgactacaggtatctcctgcagtttcagattcaagatcactcgggaacagcttgggtgacagcattccaggaggctgggcaggagttgcttggctgctcggcaacagagctcaacgcacttaaggagcgcgaggaccctcggtttgcagacaccatgctcaattgcttgtttcaggaatatctgctcaggctgaaggtcaaagaagaatcatacggcgatgagcgcaaagtgaagaacaccgcggtcaaagtggagaaggttgatccttcgggtgaaagtaaatttctgctggatttgatctccaagtcctcggcgctacattag

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Protein seq

MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSALH

Function Replication protein A 70 kDa DNA-binding subunit A [UniProtKB/Swiss-Prot:Q6YZ49]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0035730 OsKeNa_02g0035730.01 Chr02 33192495 33196144 - NAM
CDS seq

atggcgatggcgaggctgacgccgaacggcgtggcggcggcgctggcgggggacacgaacctgaagccggtgctgcagatcgtcgagctgcggggcgtccaggtcaacggcgcgggcgtcacgcgcggggagaggttccgggcggtggtctccgacggcaccgccgcgtcctccgcgctcttcgccgcgcagctcagcgaccacgcccgatccggcgccctccgacgcggcagcattgtgcagctcagcgagtacgtcatcaacgaagtcggccccagaaggattattgtcattctgaacctggaagttcttgtttcggagtgtgagataattgggaatcctacagcgctttcagaaactggatctcctatcccaaatccgacaagagtagagcaatttaacggagcacctcaatatggtttgatggcagggaactcatcaaatacaaccacaaagcctagtgacaatgttccattgttccaaaattcgatggcaggaaactcctctaactttgccactaggcccagtgacaaagttccggtcttccaaccaacagtccagccatcttatcgccctgcacctaattacaaaaaccatggagcaatcatgaaaaatgaagcccctgctagaataatccccatatctgctttaaatccttatcaaggccgctgggctatcaaggctagagttactgccaagggagatatccgccgataccataatgctaaaggtgatgggaaagtattctcttttgacttgcttgattctgatgggggagagatacgggtgacatgcttcaatgctcttcttgatcgattctatgaagttgtggaagttggtaaggtctatgtggtatcaagaggaaacttgagacctgcacagaagaactataaccatcttaacaatgagtgggagattttattggagaatggatcaactgtggatctttgtcctgatgagaacagttccattcccacccagcggtttgacttcagaccgatcaatgaaattgaggatgcccagaacaatgctatccttgacatcataggtgttgttacatcggtcaatccttgcaccacaatacagaggaaaaatggcatggaaactcagaaaagaactatgaacctgaaggatatgtctggtcgaagtgttgaggtaaccatgtggggtgacttttgcaacagagaaggctcacagcttcaaggaatggttgaacgtgggatctttcctgtgctggctgtcaaagcaggaaaagtgagtgatttcagtggcaagtctgtcggcacaatttcttcaactcagctcttcatcaaccctgattctgctgaagctcatagtctcaggcaatggtttgatagtggaggaagagatgcttctactcagtccatatccagagatatcacgcctggagcatcaaggaatgagatccgaaagacagtagcacagatcaaggatgaaggtcttggaatgggggacaaacctgactggattacggtgaaagccaccgttatattcttcaagaatgagtccttcttctacacagcttgccctaacatgattggcgacaggcagtgcaataagaaggtgacaaagagtactaatggcaattggacctgtgacaaatgcgatagggagtttgaagagtgcgactacaggtatctcctgcagtttcagattcaagatcactcgggaacagcttgggtgacagcattccaggaggctgggcaggagttgcttggctgctcggcaacagagctcaacgcacttaaggagcgcgaggaccctcggtttgcagacaccatgctcaattgcttgtttcaggaatatctgctcaggctgaaggtcaaagaagaatcatacggcgatgagcgcaaagtgaagaacaccgcggtcaaagtggagaaggttgatccttcgggtgaaagtaaatttctgctggatttgatctccaagtcctcggcgctacattag

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Protein seq

MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSALH

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.044392 2.075274 0.614857

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0776800 RBH 1.842594 1.784818 1.823892
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g53680 RBH 1.078203 0.909480 0.355708
Nipponbare | IRGSP 1.0 | RAP-db Os02g0776800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0035630 RBH 0.183303 4.044442 2.813267
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0035610 RBH 0.487087 2.575693 3.908370
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0035170 RBH 0.000000 0.202342 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0035290 RBH 2.817656 5.309787 5.419543
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0537400 RBH 4.1877855 7.65047 10.938692
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0035130 RBH 0.074390 0.463015 0.635122
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0567800 RBH 4.426526 6.320113 16.752389
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0035380 RBH 0.143219 0.140041 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0035210 RBH 0.455598 3.474434 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0035460 RBH 2.577115 7.294085 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0035420 RBH 0.354881 0.440140 0.620511
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0035000 RBH 0.0 1.598314 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G035670 RBH 0.149329 1.367663 1.312065
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0035380 RBH 0.731994 4.566481 3.928105
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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