Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0035610 | OGI:02092750 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:33423872-33427521 | ||||||||
| Gene Symbol | RPA1A, OsRPA70a, OsRPA1a, RPA1a | ||||||||||
| DNA seq | gtaaaacagatgttcgattgcatggaagagcacaagagatttcttagtcgcgacagagtaaggctttgcaggcatgtacaaaccaaaactaagggagaaattgcactgcagctagaaggcaatcatttgatcgagaaaaaggtataaaagctgatacattaagtggcgttaatattaaagtaccggcacaaaaatggaaatatcagcactaatctggatataaactattaaagcactaatctggatataaactattaagtggcgttaatattaaagtaccggcacaaaaatcgagcaggagggcgagggctatgggcactgcaacacctcacctcgctcacctcaccacgcacgagcgagcagctgatagagtagcacagtctgctaatgtagcgccgaggacttggagatcaaatccagcagaaatttactttcacccgaaggatcaaccttctccactttgaccgcggtgttcttcactttgcgctcatcgccgtatgattcttctttgaccttcagcctgagcagatattcctgaaacaagcaattgagcatggtgtctgcaaaccgagggtcctcgcgctccttaagtgcgttgagctctgttgccgagcagccaagcaactcctgcccagcctcctggaatgctgtcacccaagctgttcccgagtgatcttgaatctgaaactgcaggagatacctgtagtcgcactcttcaaactccctatcgcatttgtcacaggtccaattgccattagtactctttgtcaccttcttattgcactgcctgtcgccaatcatgttagggcaagctgtgtagaagaaggactcattcttgaagaatataacggtggctttcaccgtaatccagtcaggtttgtcccccattccaagaccttcatccttgatctgtgctactgtctttcggatctcattccttgatgctccaggcgtgatatctctggatatggactgagtagaagcatctcttcctccactatcaaaccattgcctgagactatgagcttcagcagaatcagggttgatgaagagctgagttgaagaaattgtgccgacagacttgccactgaaatcactcacttttcctgctttgacagccagcacaggaaagatcccacgttcaaccattccttgaagctgtgagccttctctgttgcaaaagtcaccccacatggttacctcaacacttcgaccagacatatccttcaggttcatagttcttttctgagtttccatgccatttttcctctgtattgtggtgcaaggattgaccgatgtaacaacacctatgatgtcaaggatagcattgttctgggcatcctcaatttcattgatcggtctgaagtcaaaccgctgggtgggaatggaactgttctcatcaggacaaagatccacagttgatccattctccaataaaatctcccactcattgttaagatggttatagttcttctgtgcaggtctcaagtttcctcttgataccacatagaccttaccaacttccacaacttcatagaatcgatcaagaagagcattgaagcatgtcacccgtatctctcccccatcagaatcaagcaagtcaaaagagaatactttcccatcacctttagcattatggtatcggcggatatctcccttggcagtaactctagccttgatagcccagcggccttgataaggatttaaagcagatatggggattattctagcaggggcttcatttttcatgattgctccatggtttttgtaattaggtgcagggcgataagatggctggactgttggttggaagaccggaactttgtcactgggcctagtggcaaagttagaggagtttcctgccatcgaattttggaacaatggaacattgtcactaggctttgtggttgtatttgatgagttccctgccatcaaaccatattgaggtgctccgttaaattgctctactcttgtcggatttgggataggagatccagtttctgaaagcgctgtaggattcccaattatctcacactccgaaacaagaacttccaggttcagaatgacaataatcctacaggtattgcaacaagtcagctcaaccaacaaaaaacaattcttgattctgctctatcaaccagtagatcagttgaaaataagaatgcaaaaggctcagaatatgatgattcacactgctacatgaatactatgtttaattacaacaccttttggtcagaaacttatcttcacttttgcatttgtcgccttgccaacatgatttgaatggacacaactatgcttccaattacttatgaaccagatacaaaagaaatgcatttagtacggtgttgtgttgaactgaatggctacagctaaaagataaaaaatacttagtacttagacccaaactgttcacagcaccagacagttgcagcattaatgctgatcaatatctaactacattggccaaatcgatgcacccaaacatggcgatttgttggctagagaaaaaaaggcacacaactaaattagtgaactaaatcagacaacactgtaaagtgtgtagtagtcaaactgaccatattaccttcatcgtttgacatgctacctgccagaaatggcgaacaccaaaggctacccaagcacatatatcacactattttgtaatcgttaatactaatgccagccaattaactactgagtatcgacaaacaccaatttgtgtcacaggacagccttagttaccactgattagtactgcaataccgaggcctctttctgacaataataattcaaatcagaattaaaatcaattggacaaatggttaacaagcaccgatcaaatgatgtcataaacaaaaccattgtcagaaaaattttgatgcacctctactagtatctagtaggaaacatgaagctcatcgacaatttaccaacagaatggcaagtactaagtattaatttaaattgcaaactagctgaaagcgggaatctaaaccacacgcagactgacacacataaaaccaggggcaagcatgaaccctaaaacgaaacgggccaaaaatcgcacgcaatcacacatcgatcagaggcaggggaatgggggggaaagtggaggaggaggcaacaaaaccttctggggccgacttcgttgatgacgtactcgctgagctgcacaatgctgccgcgtcggagggcgccggatcgggcgtggtcgctgagctgcgcggcgaagagcgcggaggacgcggcggtgccgtcggagaccaccgcccggaacctctccccgcgcgtgacgcccgcgccgttgacctggacgccccgcagctcgacgatctgcagcaccggcttcaggttcgtgtcccccgccagcgccgccgccacgccgttcggcgtcagcctcgccatcgccatcgccacccgccgccctcctccacctccacctccacctcctcctccccctctccgcttcaattcaatccgacacggagaggcgcggattaacgggaaaacccccgccctggatggttggaacttggattgggacgaggaagaagggaatggttcgaggctttgagctctcgaaaattcgaaaagatgcgaggggtgaattagaaatggtccgctaattaatgagagaggcggttgat
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| CDS seq | atggcgatggcgaggctgacgccgaacggcgtggcggcggcgctggcgggggacacgaacctgaagccggtgctgcagatcgtcgagctgcggggcgtccaggtcaacggcgcgggcgtcacgcgcggggagaggttccgggcggtggtctccgacggcaccgccgcgtcctccgcgctcttcgccgcgcagctcagcgaccacgcccgatccggcgccctccgacgcggcagcattgtgcagctcagcgagtacgtcatcaacgaagtcggccccagaaggattattgtcattctgaacctggaagttcttgtttcggagtgtgagataattgggaatcctacagcgctttcagaaactggatctcctatcccaaatccgacaagagtagagcaatttaacggagcacctcaatatggtttgatggcagggaactcatcaaatacaaccacaaagcctagtgacaatgttccattgttccaaaattcgatggcaggaaactcctctaactttgccactaggcccagtgacaaagttccggtcttccaaccaacagtccagccatcttatcgccctgcacctaattacaaaaaccatggagcaatcatgaaaaatgaagcccctgctagaataatccccatatctgctttaaatccttatcaaggccgctgggctatcaaggctagagttactgccaagggagatatccgccgataccataatgctaaaggtgatgggaaagtattctcttttgacttgcttgattctgatgggggagagatacgggtgacatgcttcaatgctcttcttgatcgattctatgaagttgtggaagttggtaaggtctatgtggtatcaagaggaaacttgagacctgcacagaagaactataaccatcttaacaatgagtgggagattttattggagaatggatcaactgtggatctttgtcctgatgagaacagttccattcccacccagcggtttgacttcagaccgatcaatgaaattgaggatgcccagaacaatgctatccttgacatcataggtgttgttacatcggtcaatccttgcaccacaatacagaggaaaaatggcatggaaactcagaaaagaactatgaacctgaaggatatgtctggtcgaagtgttgaggtaaccatgtggggtgacttttgcaacagagaaggctcacagcttcaaggaatggttgaacgtgggatctttcctgtgctggctgtcaaagcaggaaaagtgagtgatttcagtggcaagtctgtcggcacaatttcttcaactcagctcttcatcaaccctgattctgctgaagctcatagtctcaggcaatggtttgatagtggaggaagagatgcttctactcagtccatatccagagatatcacgcctggagcatcaaggaatgagatccgaaagacagtagcacagatcaaggatgaaggtcttggaatgggggacaaacctgactggattacggtgaaagccaccgttatattcttcaagaatgagtccttcttctacacagcttgccctaacatgattggcgacaggcagtgcaataagaaggtgacaaagagtactaatggcaattggacctgtgacaaatgcgatagggagtttgaagagtgcgactacaggtatctcctgcagtttcagattcaagatcactcgggaacagcttgggtgacagcattccaggaggctgggcaggagttgcttggctgctcggcaacagagctcaacgcacttaaggagcgcgaggaccctcggtttgcagacaccatgctcaattgcttgtttcaggaatatctgctcaggctgaaggtcaaagaagaatcatacggcgatgagcgcaaagtgaagaacaccgcggtcaaagtggagaaggttgatccttcgggtgaaagtaaatttctgctggatttgatctccaagtcctcggcgctacattag
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| Protein seq | MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSALH |
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| Function | Replication protein A 70 kDa DNA-binding subunit A [UniProtKB/Swiss-Prot:Q6YZ49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0035610 | OsCMeo_02g0035610.01 | Chr02 | 33423872 | 33427521 | - | NAM | ||
| CDS seq | atggcgatggcgaggctgacgccgaacggcgtggcggcggcgctggcgggggacacgaacctgaagccggtgctgcagatcgtcgagctgcggggcgtccaggtcaacggcgcgggcgtcacgcgcggggagaggttccgggcggtggtctccgacggcaccgccgcgtcctccgcgctcttcgccgcgcagctcagcgaccacgcccgatccggcgccctccgacgcggcagcattgtgcagctcagcgagtacgtcatcaacgaagtcggccccagaaggattattgtcattctgaacctggaagttcttgtttcggagtgtgagataattgggaatcctacagcgctttcagaaactggatctcctatcccaaatccgacaagagtagagcaatttaacggagcacctcaatatggtttgatggcagggaactcatcaaatacaaccacaaagcctagtgacaatgttccattgttccaaaattcgatggcaggaaactcctctaactttgccactaggcccagtgacaaagttccggtcttccaaccaacagtccagccatcttatcgccctgcacctaattacaaaaaccatggagcaatcatgaaaaatgaagcccctgctagaataatccccatatctgctttaaatccttatcaaggccgctgggctatcaaggctagagttactgccaagggagatatccgccgataccataatgctaaaggtgatgggaaagtattctcttttgacttgcttgattctgatgggggagagatacgggtgacatgcttcaatgctcttcttgatcgattctatgaagttgtggaagttggtaaggtctatgtggtatcaagaggaaacttgagacctgcacagaagaactataaccatcttaacaatgagtgggagattttattggagaatggatcaactgtggatctttgtcctgatgagaacagttccattcccacccagcggtttgacttcagaccgatcaatgaaattgaggatgcccagaacaatgctatccttgacatcataggtgttgttacatcggtcaatccttgcaccacaatacagaggaaaaatggcatggaaactcagaaaagaactatgaacctgaaggatatgtctggtcgaagtgttgaggtaaccatgtggggtgacttttgcaacagagaaggctcacagcttcaaggaatggttgaacgtgggatctttcctgtgctggctgtcaaagcaggaaaagtgagtgatttcagtggcaagtctgtcggcacaatttcttcaactcagctcttcatcaaccctgattctgctgaagctcatagtctcaggcaatggtttgatagtggaggaagagatgcttctactcagtccatatccagagatatcacgcctggagcatcaaggaatgagatccgaaagacagtagcacagatcaaggatgaaggtcttggaatgggggacaaacctgactggattacggtgaaagccaccgttatattcttcaagaatgagtccttcttctacacagcttgccctaacatgattggcgacaggcagtgcaataagaaggtgacaaagagtactaatggcaattggacctgtgacaaatgcgatagggagtttgaagagtgcgactacaggtatctcctgcagtttcagattcaagatcactcgggaacagcttgggtgacagcattccaggaggctgggcaggagttgcttggctgctcggcaacagagctcaacgcacttaaggagcgcgaggaccctcggtttgcagacaccatgctcaattgcttgtttcaggaatatctgctcaggctgaaggtcaaagaagaatcatacggcgatgagcgcaaagtgaagaacaccgcggtcaaagtggagaaggttgatccttcgggtgaaagtaaatttctgctggatttgatctccaagtcctcggcgctacattag
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| Protein seq | MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSALH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.487087 | 2.575693 | 3.908370 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0776800 | RBH | 1.842594 | 1.784818 | 1.823892 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g53680 | RBH | 1.078203 | 0.909480 | 0.355708 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0776800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0035630 | RBH | 0.183303 | 4.044442 | 2.813267 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0035730 | RBH | 0.044392 | 2.075274 | 0.614857 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035170 | RBH | 0.000000 | 0.202342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0035290 | RBH | 2.817656 | 5.309787 | 5.419543 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0537400 | RBH | 4.1877855 | 7.65047 | 10.938692 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035130 | RBH | 0.074390 | 0.463015 | 0.635122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0567800 | RBH | 4.426526 | 6.320113 | 16.752389 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035380 | RBH | 0.143219 | 0.140041 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035210 | RBH | 0.455598 | 3.474434 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0035460 | RBH | 2.577115 | 7.294085 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035420 | RBH | 0.354881 | 0.440140 | 0.620511 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035000 | RBH | 0.0 | 1.598314 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G035670 | RBH | 0.149329 | 1.367663 | 1.312065 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0035380 | RBH | 0.731994 | 4.566481 | 3.928105 |
