Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0034510 | OGI:02090420 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:32327490-32329720 | ||||||||
| Gene Symbol | OsRING-1, OsATL38 | ||||||||||
| DNA seq | agggaagacgactagccaaggcgccctcgcctcccgccgccgaccacgcgcgctatctgcatgccaagttgccgagctaggatgcacgcgcaccagcaccagcacgcgctgctcgcggcgctcctcgcgtgcgcgctcgcggcgtcgtcgtcgacggccggagcgcagccggcggggcagcaggggtatgcctacggcgacgtgtccgggcagcaggtgcacgtcagcacgacgatgatcgtgctgctggccgccgtcgtcggggttttcctgttcatcgcgatctccaccatctacctccgccactgcaccggttacgaccccgcgacggagggcggcggcgtcggcgggagccgttccatgatcctccctgccaacagcttcgtctcgaggcggcagcggcggccgcgcgggctcgactcgtcggtggtccggatgttccccaccatgaagtacgccgaggcgaaggcgctgcgggtggggaaggtcgccggcgccgcgctggagtgcgcggtgtgcctcagcgagttcgaggacgacgagatgctcaggttcctgcccaagtgcagccacgccttccacccggactgcatcggccagtggctcgccagccacgtgacctgccccgtctgccgccgcaatctcgaccctaacaaggacaccaccgaagaggtgatcatcccggccgccgccgccgccgatccgaacagcacctccagtgaaatagttgtgatacggcaagaagacggggcgcacccagcagccgtggtgatcgacgtggtcaccgaggaggacgacgaggagcggaggaaggaggagctagagcttcaggcgataggcacccagctccgcgcgatgcggtcacggtcggggctgcggccaaagacgtcggcggcgaagcttccccggtcgcactccactggccactccctcgccgtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagggagatggtcgcggcgggggagcagagcgtgcgccgcgggaggagactcggggaaggggtcggcatgggcgctcggtgcagcccccggttttcgcggtcgggcagatggtcatcttttctctcaaattctttgtcaggaaagctgtctttcctctccccgtcgtcgaggagaacgccggatagcacccaggtggaagtgtcatcatcctcgtcgtcgtcggtgacgaaggtgaaagggaagcgcgtggccgccgtcgatgttgccgacgacggttctgctcatgggactgcacagtaccctggttgcactgtggccagctcggcggcggcggcggctgtggacgtggagaaggcagctaccaggcaagttcgaacatagaaaacgaacagaagttttgagtgagaaacttgaacagttgaacttgacgtcatgcattttcccacatgaaagaaagaaatggtctttttttgtcggtgggactgtattctgtactctgtactaggtatattatcaacgccgatatgcccaaatattatgggagcacctattgatcaatcaggtgactgcagaatagcaaaggcgaaataatatacatactaggttgaagaaacttagatgcttttttttttttggaactagaaacttaggctgtgtttgagggagaggggattgagaagattggaaagatacgtaaaacgaggtgagtcattagtgcatgattaattgagtattaactattttaaatttcaaaaatggactaatatgattttttaaaacaactttcatatagaaattttttgcaaaaaatacaccatttagtagtttgggaagcgtgcgcgcggaaaacgagtgacaatatctccaatctctccccaatctcctttgaaagaacgcacccttagatgtgaatgtatattattgtacatgagcaaatcagtagaataaaagatgcctgaacaatcgcacgcagtatcattttgtgtctttaattggatagataattatattcatcctagctcttacactgtggtttgtgcaggagacgaatgcataaatgaaatgttaggcattaacacccgccgtttcggccgggcgcaggctctgtcaatatgactggtaaaccatctccatcgactggacgccgagggtaagaatttaactttacaattcatatcgatgatcgatcaatatgtaagatttgccaatacatctgaataaactgaagcctattacta
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| CDS seq | atgccaagttgccgagctaggatgcacgcgcaccagcaccagcacgcgctgctcgcggcgctcctcgcgtgcgcgctcgcggcgtcgtcgtcgacggccggagcgcagccggcggggcagcaggggtatgcctacggcgacgtgtccgggcagcaggtgcacgtcagcacgacgatgatcgtgctgctggccgccgtcgtcggggttttcctgttcatcgcgatctccaccatctacctccgccactgcaccggttacgaccccgcgacggagggcggcggcgtcggcgggagccgttccatgatcctccctgccaacagcttcgtctcgaggcggcagcggcggccgcgcgggctcgactcgtcggtggtccggatgttccccaccatgaagtacgccgaggcgaaggcgctgcgggtggggaaggtcgccggcgccgcgctggagtgcgcggtgtgcctcagcgagttcgaggacgacgagatgctcaggttcctgcccaagtgcagccacgccttccacccggactgcatcggccagtggctcgccagccacgtgacctgccccgtctgccgccgcaatctcgaccctaacaaggacaccaccgaagaggtgatcatcccggccgccgccgccgccgatccgaacagcacctccagtgaaatagttgtgatacggcaagaagacggggcgcacccagcagccgtggtgatcgacgtggtcaccgaggaggacgacgaggagcggaggaaggaggagctagagcttcaggcgataggcacccagctccgcgcgatgcggtcacggtcggggctgcggccaaagacgtcggcggcgaagcttccccggtcgcactccactggccactccctcgccgtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagggagatggtcgcggcgggggagcagagcgtgcgccgcgggaggagactcggggaaggggtcggcatgggcgctcggtgcagcccccggttttcgcggtcgggcagatggtcatcttttctctcaaattctttgtcaggaaagctgtctttcctctccccgtcgtcgaggagaacgccggatagcacccaggtggaagtgtcatcatcctcgtcgtcgtcggtgacgaaggtgaaagggaagcgcgtggccgccgtcgatgttgccgacgacggttctgctcatgggactgcacagtaccctggttgcactgtggccagctcggcggcggcggcggctgtggacgtggagaaggcagctaccaggagacgaatgcataaatga
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| Protein seq | MPSCRARMHAHQHQHALLAALLACALAASSSTAGAQPAGQQGYAYGDVSGQQVHVSTTMIVLLAAVVGVFLFIAISTIYLRHCTGYDPATEGGGVGGSRSMILPANSFVSRRQRRPRGLDSSVVRMFPTMKYAEAKALRVGKVAGAALECAVCLSEFEDDEMLRFLPKCSHAFHPDCIGQWLASHVTCPVCRRNLDPNKDTTEEVIIPAAAAADPNSTSSEIVVIRQEDGAHPAAVVIDVVTEEDDEERRKEELELQAIGTQLRAMRSRSGLRPKTSAAKLPRSHSTGHSLAVRLDGDLERYTLRLPEHVHREMVAAGEQSVRRGRRLGEGVGMGARCSPRFSRSGRWSSFLSNSLSGKLSFLSPSSRRTPDSTQVEVSSSSSSSVTKVKGKRVAAVDVADDGSAHGTAQYPGCTVASSAAAAAVDVEKAATRRRMHK |
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| Function | E3 ubiquitin-protein ligase ATL6 [UniProtKB/Swiss-Prot:Q8RXX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0034510 | OsKeNa_02g0034510.02 | Chr02 | 32327490 | 32329719 | + | NAM | ||
| CDS seq | atgccaagttgccgagctaggatgcacgcgcaccagcaccagcacgcgctgctcgcggcgctcctcgcgtgcgcgctcgcggcgtcgtcgtcgacggccggagcgcagccggcggggcagcaggggtatgcctacggcgacgtgtccgggcagcaggtgcacgtcagcacgacgatgatcgtgctgctggccgccgtcgtcggggttttcctgttcatcgcgatctccaccatctacctccgccactgcaccggttacgaccccgcgacggagggcggcggcgtcggcgggagccgttccatgatcctccctgccaacagcttcgtctcgaggcggcagcggcggccgcgcgggctcgactcgtcggtggtccggatgttccccaccatgaagtacgccgaggcgaaggcgctgcgggtggggaaggtcgccggcgccgcgctggagtgcgcggtgtgcctcagcgagttcgaggacgacgagatgctcaggttcctgcccaagtgcagccacgccttccacccggactgcatcggccagtggctcgccagccacgtgacctgccccgtctgccgccgcaatctcgaccctaacaaggacaccaccgaagaggtgatcatcccggccgccgccgccgccgatccgaacagcacctccagtgaaatagttgtgatacggcaagaagacggggcgcacccagcagccgtggtgatcgacgtggtcaccgaggaggacgacgaggagcggaggaaggaggagctagagcttcaggcgataggcacccagctccgcgcgatgcggtcacggtcggggctgcggccaaagacgtcggcggcgaagcttccccggtcgcactccactggccactccctcgccgtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagggagatggtcgcggcgggggagcagagcgtgcgccgcgggaggagactcggggaaggggtcggcatgggcgctcggtgcagcccccggttttcgcggtcgggcagatggtcatcttttctctcaaattctttgtcaggaaagctgtctttcctctccccgtcgtcgaggagaacgccggatagcacccaggtggaagtgtcatcatcctcgtcgtcgtcggtgacgaaggtgaaagggaagcgcgtggccgccgtcgatgttgccgacgacggttctgctcatgggactgcacagtaccctggttgcactgtggccagctcggcggcggcggcggctgtggacgtggagaaggcagctaccaggcaagttcgaacatag
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| Protein seq | MPSCRARMHAHQHQHALLAALLACALAASSSTAGAQPAGQQGYAYGDVSGQQVHVSTTMIVLLAAVVGVFLFIAISTIYLRHCTGYDPATEGGGVGGSRSMILPANSFVSRRQRRPRGLDSSVVRMFPTMKYAEAKALRVGKVAGAALECAVCLSEFEDDEMLRFLPKCSHAFHPDCIGQWLASHVTCPVCRRNLDPNKDTTEEVIIPAAAAADPNSTSSEIVVIRQEDGAHPAAVVIDVVTEEDDEERRKEELELQAIGTQLRAMRSRSGLRPKTSAAKLPRSHSTGHSLAVRLDGDLERYTLRLPEHVHREMVAAGEQSVRRGRRLGEGVGMGARCSPRFSRSGRWSSFLSNSLSGKLSFLSPSSRRTPDSTQVEVSSSSSSSVTKVKGKRVAAVDVADDGSAHGTAQYPGCTVASSAAAAAVDVEKAATRQVRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0034510 | OsKeNa_02g0034510.01 | Chr02 | 32327490 | 32329720 | + | NAM | ||
| CDS seq | atgccaagttgccgagctaggatgcacgcgcaccagcaccagcacgcgctgctcgcggcgctcctcgcgtgcgcgctcgcggcgtcgtcgtcgacggccggagcgcagccggcggggcagcaggggtatgcctacggcgacgtgtccgggcagcaggtgcacgtcagcacgacgatgatcgtgctgctggccgccgtcgtcggggttttcctgttcatcgcgatctccaccatctacctccgccactgcaccggttacgaccccgcgacggagggcggcggcgtcggcgggagccgttccatgatcctccctgccaacagcttcgtctcgaggcggcagcggcggccgcgcgggctcgactcgtcggtggtccggatgttccccaccatgaagtacgccgaggcgaaggcgctgcgggtggggaaggtcgccggcgccgcgctggagtgcgcggtgtgcctcagcgagttcgaggacgacgagatgctcaggttcctgcccaagtgcagccacgccttccacccggactgcatcggccagtggctcgccagccacgtgacctgccccgtctgccgccgcaatctcgaccctaacaaggacaccaccgaagaggtgatcatcccggccgccgccgccgccgatccgaacagcacctccagtgaaatagttgtgatacggcaagaagacggggcgcacccagcagccgtggtgatcgacgtggtcaccgaggaggacgacgaggagcggaggaaggaggagctagagcttcaggcgataggcacccagctccgcgcgatgcggtcacggtcggggctgcggccaaagacgtcggcggcgaagcttccccggtcgcactccactggccactccctcgccgtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagggagatggtcgcggcgggggagcagagcgtgcgccgcgggaggagactcggggaaggggtcggcatgggcgctcggtgcagcccccggttttcgcggtcgggcagatggtcatcttttctctcaaattctttgtcaggaaagctgtctttcctctccccgtcgtcgaggagaacgccggatagcacccaggtggaagtgtcatcatcctcgtcgtcgtcggtgacgaaggtgaaagggaagcgcgtggccgccgtcgatgttgccgacgacggttctgctcatgggactgcacagtaccctggttgcactgtggccagctcggcggcggcggcggctgtggacgtggagaaggcagctaccaggagacgaatgcataaatga
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| Protein seq | MPSCRARMHAHQHQHALLAALLACALAASSSTAGAQPAGQQGYAYGDVSGQQVHVSTTMIVLLAAVVGVFLFIAISTIYLRHCTGYDPATEGGGVGGSRSMILPANSFVSRRQRRPRGLDSSVVRMFPTMKYAEAKALRVGKVAGAALECAVCLSEFEDDEMLRFLPKCSHAFHPDCIGQWLASHVTCPVCRRNLDPNKDTTEEVIIPAAAAADPNSTSSEIVVIRQEDGAHPAAVVIDVVTEEDDEERRKEELELQAIGTQLRAMRSRSGLRPKTSAAKLPRSHSTGHSLAVRLDGDLERYTLRLPEHVHREMVAAGEQSVRRGRRLGEGVGMGARCSPRFSRSGRWSSFLSNSLSGKLSFLSPSSRRTPDSTQVEVSSSSSSSVTKVKGKRVAAVDVADDGSAHGTAQYPGCTVASSAAAAAVDVEKAATRRRMHK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.057608 | 0.964490 | 0.246815 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0759400 | RBH | 0.273362 | 0.143518 | 0.343185 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52210 | RBH | 0.142956 | 0.074647 | 0.068317 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0759400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034420 | RBH | 0.0 | 1.390209 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0007980 | RBH | 0.070507 | 1.182405 | 0.642234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0034390 | RBH | 0.348013 | 0.0 | 0.859070 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033980 | RBH | 0.028436 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0034040 | RBH | 1.331984 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0449900 | SBH | 1.2192925 | 6.0871815 | 9.3304095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033860 | RBH | 0.0 | 0.103216 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0477600 | SBH | 1.2339095 | 3.0242745 | 19.2905455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0034120 | RBH | 0.103061 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033950 | RBH | 0.406630 | 1.944038 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034230 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034150 | RBH | 0.237227 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033730 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034430 | RBH | 0.101413 | 0.0 | 0.228763 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0034150 | RBH | 0.305822 | 0.0 | 1.010185 |
