Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_02g0021200 OGI:02060460 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr02:21155876-21162171
Gene Symbol -
DNA seq

tttagaaaaacttccttcgggtgtgtagcggccgggatattttattccattttctaaaaatttacaagttctgcaactggtccaagcctccactccacatttctagtcctacagatttacagaacatcagagatcatcctaatgccctcctttttcctatggtatacaatgaatgatgaatcagatcagagtaagccatatatagttacaaatgatctgtcaacaaaaaacatatgcgactccctctctatcttgtgtcagatatcaacacatatcatctacaacaactctgcagatcagatcagacggcctagaatctcttttgaggagccatgctacaagaaactctgcaggtcagaaggcctagaatctctttggagagccatatgggcttggaggtctcggctggctcaactccagccagggatctggaactgcggcgcttcgcctcgactggttctgcaagggattgtttgggtaggctgctgctgataatccaggggagagcgccggatgcgttggtgaagggaggcagctccagtttgattgcttgaactgccgcagcgggcttgagcatggcgacaccggtaaagacatgtttgctctcactgcagttgggctgctgcacgtgcacggccatgttgagaagtaggttacaagatgaacttggaaacaaaggatgggcaggaggtagaatggtatacctggaggtattgtgaggagaaggataggctgtggaaaatccagcgaattcccttgcgcttagtcctgcgataccatgcagaggagcaatgtttctccttgacgaggattctctgtttggctgcaaaaggggaaaaaattgaagacatgacaaggatgtccggacatgggaattacgtcgtgtaatccagtctttaaacctggtttcacgtaattaatttatcaacaacagatatgtaaagcaagcttcctaaaaagaattatgtgcaacacatgaatcagccctactgccccccatcatctgatgcgatgatacaaataaaatggacagtcacaaaggtcttctgatcttgtaaacatctagaaatatataatctactatgtcctgttggtacttcaaaagagtaaaagagctcgacattgactctgaaaaaaacaaatgagcagaaatctcacctttctatgacttgctgcaggggaagaaattccatttctcaactgagtaccattgcatgttggtgctcttacagcctgatggtcatggacaaaagggtgacccagcaacgaagctgcagaaggcctctgtactggatcacgctttaagcacaaacttaggaaatctttcccttctttggaaaaacaatctggaatttctggtatatctttactgtttgcaattttaaatattgctgccacctgcaagaccaagaatctgacatgaggctcaccaactataaaagaagtatcaagagtcctccagttattttcactaaaagaggcagaatagcatctccaagtggaacaaagcattttggtaaatattaaacgaagtagcatacatcttcatacggataccagggatgcttcgcggttgccatctcaataattgtacatccaaggctccatatatcaaccgcaagattatatcctttgttattcattacaacctgcacgttttacatttagttggacaaaccgttcttggtgaagtaaattacataacatatgacacagtgctccaagtgttgtaaacaggaaaccgtatacctcaggagccatccagtatgggcttcctctgaaagagcgtatttcggcgaaagatgtcacctgtttcaacataagcattgaaatgagataaaagagacaaccaaagctcaaaaggaattcattttgttgttgaattgaagaagcccttccatagccatcagagacatcttttttaaatcatgtagaaatgacatcaccagcccacaacataaagggaagtttatagacatagtacagatctttatcactcccaagtctcaaacttagaggaagccagtgtttatgctcaatgttaaagacattttactgagttgcatctagcattctgtcagaggaggaacttaatactccctccgtacttgtaaaggaagtcgtttaggacagcgacacggtctccaaaatacaattttgacttcttgtttctataaaaatatttattgaaaagtgatatatgtatacttttatgaaagtatttttcaagacaaatctatacatataatttttatattttcaaactcaacaacttgagagttattcatgatttatatttccaaggtttgacttaaacattgtcctaaacgacttcctttacgagtatggagagagtattcagttagatgactactaaatgctttctgtggtctcagtgaggttttaatgatgcttctacacaaccaaacaagcaaaaccccgggaagaacgaaaatataactgcatacatgtttagccatgccaaagtccgcaagtttgacttcaccattagggcccacaagtatgtttgctcctttaatgtctctgtccacaaaaataaaatttacaaagtgatcattgtattcagtgcctaccatgaaaatcactaacagtgtaggataatttacattacctgtgtacagtattcctaccatgcaagtaggcaagccctgaaagaatctgccgagtataattacgaatcacaggttccttaaatggaccgtactctctaagtaatttatgaattgaacctccagaaacatattccagatagatggacagagcttcatcagcctgctcaaaattgtttaaattaggcaagccaaagcttaatgagaactttcagaaaataagtgaacaatcacacaaaattagtaaaactgatggtgtctcctttcttggtggaaactggaaccagggcgtataccctctgattttagaaaagaggaaaaggacaaagcatgcacgattaagcattagaaccaaaattgatgcataaatttatgctctgtgcaccagagagtgagtctatgcatcatcagattagttcccaccaaaaaaaatgttataattttccctcacagatccatcttgtaatgagcaacgcacaatacaaatatgctaagatgagaaagaataaaattatgtggctgcatgacatgcttattgaacaattagtcaataatcatattgaacctaccagttcacttccataatattgcacgatattttggtgcgagagctgcttaagcatatctatttcctgtcattacaagatggacaagttaataaaccaaaacaggatgtagtcagagacaggttggaaaagtgttttgtgttacaataaaaataaattgttcaaaatgacacacagcctatcaattgtatagggcaatcaaatgacctgattcaattgcctaaggcgttcctttgaatgtgaatcgtccaaaaaaacctgcacctccttgattgcacaaaactgcccattttcactgtacaacgccaattaagatcaatcacaagatggcaacaataagagtcaagagtgaaatagattcatagaaatagttctaagattttctttcatgctctcatgtgatgccaaaaaagtgtgttgtgtagcaacttttgtttaaggaaattaaatagaaccatgtatacatgtgataattatgacttcacataccccctctcctcctttttctatgttctagcctaccgaattgaacatgtgggtccacataaatatcaaacttttgtgcatgtacgtaatcaaattacacatagcaacattttgggtatacagccttagacagaaaaacaaaggatttagctgcgatctagccatagaactaaaattctatataaacttcaaagatgaacctgcatggatgcaaagtacatgaaaaaatgagtcacattcatagtaacttctttgggtgaacttcgaaaccatattattcttttaatgttctataagataaacctccatacctgttgaaaccaagataaacctgaccaaatgtgccgctacctaatagcttcccccttttccactgtgattggaattgactagaagtaatggaagatgaaggaatggatgagctagcaacaggaactggagggagaggcaagggttgagatggactcctaggatcatccatccttttcactggtgaccttggggtaaacccaaaatctcttgcgcagcaagcagaataagcatgccctctcggaccaggggaatgacttcttggtcttacagcaaatgtatcctcaggcaacattctgccccgagaataactagattcacttgttgaaggttcaaagatttgcatgtgatgaacttcgttcacatttgcaataggaacctcaaagaatttttgatgctcctggagaataccacatgatacaaaacgcttctcttctaccatgccattatgaccatcaggtagcacagtccttccgctagtgtggacaactggatctgtatacctacagattccaacaacaaacaggaaatatcagaggacttccaggactgtaggaacagattgtcgaaaaacaaaataggtcatctttcaatagaaaacaaaatagagccaaacagggacactatcagaaagggcaaaggcatgaaacacgcactataactacaggcagaaagaaaagaaccatcaatgtgttgaaatttagcttgacgccataaaaagatgcattcttttatgctctggcatcattcttgaaggaacagataatgctactcctagcatagaaacacctcggcgtcatttccatagaatgatcgtgaggaaaacagtagatattctatttatctataagtagccaccgtatttgttctacgccaagaaattcccacgctaatcaaagatgagaaagatttgcgtctccaagtggaacaaagcattcatttccatagaatgattgttaggaatacattagacattctatctatctataagtagccgccatgtttgttctatgcctaaaaaatttccacgttaacgaaagatgagaaagatttgcgctgttttagattacaacggtgcagatttattgataaaggtttacataagacaaacttgttcttatcaaagcaggaatagttgtatatcaaatccaattctatctgggcaaaattgcgcgggaattccacgcaaacaaattacgcgggaaattctgttagttaacaatatcataaatatcctagcataaaatatcttaaatacaattgaatgaataaaaaagaaggatgggttgaacttttgacgcgctttggtagcctgactccccaagtccaccgaattatactagtaataaacaaaggaatacggttttgtacgctataggcggtgagagaagagacgaggtcaacggccgtatggcagttgttgcgaagcctcagtctccacacagtttggtcttttagaagtcaactcaagacccctaaatcacactatcactcggcacacttcgtgattactactaacgaactggaaaaagggtaatcgcgtcgaattcgttgcgatcacggtttggagttgtagcagctacgcccataattggagtacccgaccaaaccgaaacaaaaacaaaaacaaaaatgaaaaaaaaatagcaggtcggtagctgtaaaacggagcagccagtacgaagcaaatcacctgtaattccggtgatccgcctcgtcgtccgacgagctcccgcccgagaccgactcggccgccgacgcgcacgccggcggcgacggcgacggcggcgccgcggcgggggacgccaggggcatcggcgccgacttggacaccggccgcgggagcggcagcccgtggtgctggtcctgtggccccgggcatcgcgggggcacggcgctggcgccggcgccccaccgcgtcggcgtcggcgtggtggaggatggagacgcgcaggcggacgggtacgcggacgttccccccaggtcgacggagtccctcggcgaggtcgccgtggtagaggcggcggcggcgtcccccgcgggcttgtcgcgcctccgcctccacttcctccgcagccaccccagcggcatcccctccgctcgttcctccctattcccgaacgagcctttcccccctcctccgccgccggagcagcagcagcagccgccgccgccgcagccgcacgagacgaggcgcggcgaggcgaagcgcgcgtgaggtggagctggaggagaaggccgctttctttttttttacttccttttttttctttttttttttgttttggttctctcctgctgcttg

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CDS seq

atgccgctggggtggctgcggaggaagtggaggcggaggcgcgacaagcccgcgggggacgccgccgccgcctctaccacggcgacctcgccgagggactccgtcgacctggggggaacgtccgcgtacccgtccgcctgcgcgtctccatcctccaccacgccgacgccgacgcggtggggcgccggcgccagcgccgtgcccccgcgatgcccggggccacaggaccagcaccacgggctgccgctcccgcggccggtgtccaagtcggcgccgatgcccctggcgtcccccgccgcggcgccgccgtcgccgtcgccgccggcgtgcgcgtcggcggccgagtcggtctcgggcgggagctcgtcggacgacgaggcggatcaccggaattacaggtatacagatccagttgtccacactagcggaaggactgtgctacctgatggtcataatggcatggtagaagagaagcgttttgtatcatgtggtattctccaggagcatcaaaaattctttgaggttcctattgcaaatgtgaacgaagttcatcacatgcaaatctttgaaccttcaacaagtgaatctagttattctcggggcagaatgttgcctgaggatacatttgctgtaagaccaagaagtcattcccctggtccgagagggcatgcttattctgcttgctgcgcaagagattttgggtttaccccaaggtcaccagtgaaaaggatggatgatcctaggagtccatctcaacccttgcctctccctccagttcctgttgctagctcatccattccttcatcttccattacttctagtcaattccaatcacagtggaaaagggggaagctattaggtagcggcacatttggtcaggtttatcttggtttcaacagtgaaaatgggcagttttgtgcaatcaaggaggtgcaggtttttttggacgattcacattcaaaggaacgccttaggcaattgaatcaggaaatagatatgcttaagcagctctcgcaccaaaatatcgtgcaatattatggaagtgaactggctgatgaagctctgtccatctatctggaatatgtttctggaggttcaattcataaattacttagagagtacggtccatttaaggaacctgtgattcgtaattatactcggcagattctttcagggcttgcctacttgcatggtaggaatactgtacacagagacattaaaggagcaaacatacttgtgggccctaatggtgaagtcaaacttgcggactttggcatggctaaacatgtgacatctttcgccgaaatacgctctttcagaggaagcccatactggatggctcctgaggttgtaatgaataacaaaggatataatcttgcggttgatatatggagccttggatgtacaattattgagatggcaaccgcgaagcatccctggtatccgtatgaagatgtggcagcaatatttaaaattgcaaacagtaaagatataccagaaattccagattgtttttccaaagaagggaaagatttcctaagtttgtgcttaaagcgtgatccagtacagaggccttctgcagcttcgttgctgggtcacccttttgtccatgaccatcaggctgtaagagcaccaacatgcaatggtactcagttgagaaatggaatttcttcccctgcagcaagtcatagaaagccaaacagagaatcctcgtcaaggagaaacattgctcctctgcatggtatcgcaggactaagcgcaagggaattcgctggattttccacagcctatccttctcctcacaatacctccagcagcccaactgcagtgagagcaaacatgtctttaccggtgtcgccatgctcaagcccgctgcggcagttcaagcaatcaaactggagctgcctcccttcaccaacgcatccggcgctctcccctggattatcagcagcagcctacccaaacaatcccttgcagaaccagtcgaggcgaagcgccgcagttccagatccctggctggagttgagccagccgagacctccaagcccatatggctctccaaagagattctag

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Protein seq

MPLGWLRRKWRRRRDKPAGDAAAASTTATSPRDSVDLGGTSAYPSACASPSSTTPTPTRWGAGASAVPPRCPGPQDQHHGLPLPRPVSKSAPMPLASPAAAPPSPSPPACASAAESVSGGSSSDDEADHRNYRYTDPVVHTSGRTVLPDGHNGMVEEKRFVSCGILQEHQKFFEVPIANVNEVHHMQIFEPSTSESSYSRGRMLPEDTFAVRPRSHSPGPRGHAYSACCARDFGFTPRSPVKRMDDPRSPSQPLPLPPVPVASSSIPSSSITSSQFQSQWKRGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVFLDDSHSKERLRQLNQEIDMLKQLSHQNIVQYYGSELADEALSIYLEYVSGGSIHKLLREYGPFKEPVIRNYTRQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHVTSFAEIRSFRGSPYWMAPEVVMNNKGYNLAVDIWSLGCTIIEMATAKHPWYPYEDVAAIFKIANSKDIPEIPDCFSKEGKDFLSLCLKRDPVQRPSAASLLGHPFVHDHQAVRAPTCNGTQLRNGISSPAASHRKPNRESSSRRNIAPLHGIAGLSAREFAGFSTAYPSPHNTSSSPTAVRANMSLPVSPCSSPLRQFKQSNWSCLPSPTHPALSPGLSAAAYPNNPLQNQSRRSAAVPDPWLELSQPRPPSPYGSPKRF

Function Mitogen-activated protein kinase kinase kinase 3 [UniProtKB/Swiss-Prot:F4HRJ4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0021200 OsKeNa_02g0021200.01 Chr02 21155876 21162157 - NAM
CDS seq

atgccgctggggtggctgcggaggaagtggaggcggaggcgcgacaagcccgcgggggacgccgccgccgcctctaccacggcgacctcgccgagggactccgtcgacctggggggaacgtccgcgtacccgtccgcctgcgcgtctccatcctccaccacgccgacgccgacgcggtggggcgccggcgccagcgccgtgcccccgcgatgcccggggccacaggaccagcaccacgggctgccgctcccgcggccggtgtccaagtcggcgccgatgcccctggcgtcccccgccgcggcgccgccgtcgccgtcgccgccggcgtgcgcgtcggcggccgagtcggtctcgggcgggagctcgtcggacgacgaggcggatcaccggaattacaggtatacagatccagttgtccacactagcggaaggactgtgctacctgatggtcataatggcatggtagaagagaagcgttttgtatcatgtggtattctccaggagcatcaaaaattctttgaggttcctattgcaaatgtgaacgaagttcatcacatgcaaatctttgaaccttcaacaagtgaatctagttattctcggggcagaatgttgcctgaggatacatttgctgtaagaccaagaagtcattcccctggtccgagagggcatgcttattctgcttgctgcgcaagagattttgggtttaccccaaggtcaccagtgaaaaggatggatgatcctaggagtccatctcaacccttgcctctccctccagttcctgttgctagctcatccattccttcatcttccattacttctagtcaattccaatcacagtggaaaagggggaagctattaggtagcggcacatttggtcaggtttatcttggtttcaacagtgaaaatgggcagttttgtgcaatcaaggaggtgcaggtttttttggacgattcacattcaaaggaacgccttaggcaattgaatcaggaaatagatatgcttaagcagctctcgcaccaaaatatcgtgcaatattatggaagtgaactggctgatgaagctctgtccatctatctggaatatgtttctggaggttcaattcataaattacttagagagtacggtccatttaaggaacctgtgattcgtaattatactcggcagattctttcagggcttgcctacttgcatggtaggaatactgtacacagagacattaaaggagcaaacatacttgtgggccctaatggtgaagtcaaacttgcggactttggcatggctaaacatgtgacatctttcgccgaaatacgctctttcagaggaagcccatactggatggctcctgaggttgtaatgaataacaaaggatataatcttgcggttgatatatggagccttggatgtacaattattgagatggcaaccgcgaagcatccctggtatccgtatgaagatgtggcagcaatatttaaaattgcaaacagtaaagatataccagaaattccagattgtttttccaaagaagggaaagatttcctaagtttgtgcttaaagcgtgatccagtacagaggccttctgcagcttcgttgctgggtcacccttttgtccatgaccatcaggctgtaagagcaccaacatgcaatggtactcagttgagaaatggaatttcttcccctgcagcaagtcatagaaagccaaacagagaatcctcgtcaaggagaaacattgctcctctgcatggtatcgcaggactaagcgcaagggaattcgctggattttccacagcctatccttctcctcacaatacctccagcagcccaactgcagtgagagcaaacatgtctttaccggtgtcgccatgctcaagcccgctgcggcagttcaagcaatcaaactggagctgcctcccttcaccaacgcatccggcgctctcccctggattatcagcagcagcctacccaaacaatcccttgcagaaccagtcgaggcgaagcgccgcagttccagatccctggctggagttgagccagccgagacctccaagcccatatggctctccaaagagattctag

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Protein seq

MPLGWLRRKWRRRRDKPAGDAAAASTTATSPRDSVDLGGTSAYPSACASPSSTTPTPTRWGAGASAVPPRCPGPQDQHHGLPLPRPVSKSAPMPLASPAAAPPSPSPPACASAAESVSGGSSSDDEADHRNYRYTDPVVHTSGRTVLPDGHNGMVEEKRFVSCGILQEHQKFFEVPIANVNEVHHMQIFEPSTSESSYSRGRMLPEDTFAVRPRSHSPGPRGHAYSACCARDFGFTPRSPVKRMDDPRSPSQPLPLPPVPVASSSIPSSSITSSQFQSQWKRGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVFLDDSHSKERLRQLNQEIDMLKQLSHQNIVQYYGSELADEALSIYLEYVSGGSIHKLLREYGPFKEPVIRNYTRQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHVTSFAEIRSFRGSPYWMAPEVVMNNKGYNLAVDIWSLGCTIIEMATAKHPWYPYEDVAAIFKIANSKDIPEIPDCFSKEGKDFLSLCLKRDPVQRPSAASLLGHPFVHDHQAVRAPTCNGTQLRNGISSPAASHRKPNRESSSRRNIAPLHGIAGLSAREFAGFSTAYPSPHNTSSSPTAVRANMSLPVSPCSSPLRQFKQSNWSCLPSPTHPALSPGLSAAAYPNNPLQNQSRRSAAVPDPWLELSQPRPPSPYGSPKRF

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0021200 OsKeNa_02g0021200.02 Chr02 21155878 21162171 - IsoSeq
CDS seq

agcagcaggagagaaccaaaacaaaaaaaaaaagaaaaaaaaggaagtaaaaaaaaagaaagcggccttctcctccagctccacctcacgcgcgcttcgcctcgccgcgcctcgtctcgtgcggctgcggcggcggcggctgctgctgctgctccggcggcggaggaggggggaaaggctcgttcgggaatagggaggaacgagcggaggggatgccgctggggtggctgcggaggaagtggaggcggaggcgcgacaagcccgcgggggacgccgccgccgcctctaccacggcgacctcgccgagggactccgtcgacctggggggaacgtccgcgtacccgtccgcctgcgcgtctccatcctccaccacgccgacgccgacgcggtggggcgccggcgccagcgccgtgcccccgcgatgcccggggccacaggaccagcaccacgggctgccgctcccgcggccggtgtccaagtcggcgccgatgcccctggcgtcccccgccgcggcgccgccgtcgccgtcgccgccggcgtgcgcgtcggcggccgagtcggtctcgggcgggagctcgtcggacgacgaggcggatcaccggaattacaggtatacagatccagttgtccacactagcggaaggactgtgctacctgatggtcataatggca

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Protein seq

SSRREPKQKKKEKKGSKKKESGLLLQLHLTRASPRRASSRAAAAAAAAAAAPAAEEGGKARSGIGRNERRGCRWGGCGGSGGGGATSPRGTPPPPLPRRPRRGTPSTWGERPRTRPPARLHPPPRRRRRGGAPAPAPCPRDARGHRTSTTGCRSRGRCPSRRRCPWRPPPRRRRRRRRRRARRRPSRSRAGARRTTRRITGITGIQIQLSTLAEGLCYLMVIMA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr02 21156494 21156580 - OsKeNa_02g0021200.01 OsKeNa_02g0021200.02,OsKeNa_02g0021200.01 All

Expression

Leaf Root Panicle
FPKM 0.172999 0.546246 0.933411

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0555900 RBH 2.092030 1.699361 0.998908
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g35010 RBH 1.635536 1.629437 0.457851
Nipponbare | IRGSP 1.0 | RAP-db Os02g0555900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0021120 RBH 0.250863 2.972961 1.437026
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0014930 RBH 1.508680 2.547067 7.020557
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0021190 RBH 0.393410 3.123955 4.521783
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0020930 RBH 0.136410 0.088398 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0020850 RBH 2.713859 0.000000 12.163851
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0346300 RBH 2.6469 22.907527 19.1187155
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0020580 RBH 0.073355 0.075097 1.041433
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0371700 RBH 7.544248 32.949284 7.30313
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0021060 RBH 0.480783 0.070837 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0020800 RBH 0.552245 2.999901 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0021250 RBH 1.768569 9.176357 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0020940 RBH 0.482701 0.584247 0.428217
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0020770 RBH 0.089377 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G021200 RBH 0.461417 0.000000 0.805571
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0020950 RBH 0.000000 3.388838 4.975317
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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