Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0021190 | OGI:02060460 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:21250632-21256417 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaaaaacttccttcgggtgtgtagcggccgggatattttattccattttctaaaaatttacaagttctgcaactggtccaagcctccactccacatttctagtcctacagatttacagaacatcagagatcatcctaatgccctcctttttcctatggtatacaatgaatgatgaatcagatcagagtaagccatatatagttacaaatgatctgtcaacaaaaaacatatgcgactccctctctatcttgtgtcagatatcaacacatatcatctacaacaactctgcagatcagatcagacggcctagaatctcttttgaggagccatgctacaagaaactctgcaggtcagaaggcctagaatctctttggagagccatatgggcttggaggtctcggctggctcaactccagccagggatctggaactgcggcgcttcgcctcgactggttctgcaagggattgtttgggtaggctgctgctgataatccaggggagagcgccggatgcgttggtgaagggaggcagctccagtttgattgcttgaactgccgcagcgggcttgagcatggcgacaccggtaaagacatgtttgctctcactgcagttgggctgctgcacgtgcacggccatgttgagaagtaggttacaagatgaacttggaaacaaaggatgggcaggaggtagaatggtatacctggaggtattgtgaggagaaggataggctgtggaaaatccagcgaattcccttgcgcttagtcctgcgataccatgcagaggagcaatgtttctccttgacgaggattctctgtttggctgcaaaaggggaaaaaattgaagacatgacaaggatgtccggacatgggaattacgtcgtgtaatccagtctttaaacctggtttcacgtaattaatttatcaacaacagatatgtaaagcaagcttcctaaaaagaattatgtgcaacacatgaatcagccctactgccccccatcatctgatgcgatgatacaaataaaatggacagtcacaaaggtcttctgatcttgtaaacatctagaaatatataatctactatgtcctgttggtacttcaaaagagtaaaagagctcgacattgactctgaaaaaaacaaatgagcagaaatctcacctttctatgacttgctgcaggggaagaaattccatttctcaactgagtaccattgcatgttggtgctcttacagcctgatggtcatggacaaaagggtgacccagcaacgaagctgcagaaggcctctgtactggatcacgctttaagcacaaacttaggaaatctttcccttctttggaaaaacaatctggaatttctggtatatctttactgtttgcaattttaaatattgctgccacctgcaagaccaagaatctgacatgaggctcaccaactataaaagaagtatcaagagtcctccagttattttcactaaaagaggcagaatagcatctccaagtggaacaaagcattttggtaaatattaaacgaagtagcatacatcttcatacggataccagggatgcttcgcggttgccatctcaataattgtacatccaaggctccatatatcaaccgcaagattatatcctttgttattcattacaacctgcacgttttacatttagttggacaaaccgttcttggtgaagtaaattacataacatatgacacagtgctccaagtgttgtaaacaggaaaccgtatacctcaggagccatccagtatgggcttcctctgaaagagcgtatttcggcgaaagatgtcacctgtttcaacataagcattgaaatgagataaaagagacaaccaaagctcaaaaggaattcattttgttgttgaattgaagaagcccttccatagccatcagagacatcttttttaaatcatgtagaaatgacatcaccagcccacaacataaagggaagtttatagacatagtacagatctttatcactcccaagtctcaaacttagaggaagccagtgtttatgctcaatgttaaagacattttactgagttgcatctagcattctgtcagaggaggaacttaatactccctccgtacttgtaaaggaagtcgtttaggacagcgacacggtctccaaaatacaattttgacttcttgtttctataaaaatatttattgaaaagtgatatatgtatacttttatgaaagtatttttcaagacaaatctatacatataatttttatattttcaaactcaacaacttgagagttattcatgatttatatttccaaggtttgacttaaacattgtcctaaacgacttcctttacgagtatggagagagtattcagttagatgactactaaatgctttctgtggtctcagtgaggttttaatgatgcttctacacaaccaaacaagcaaaaccccgggaagaacgaaaatataactgcatacatgtttagccatgccaaagtccgcaagtttgacttcaccattagggcccacaagtatgtttgctcctttaatgtctctgtccacaaaaataaaatttacaaagtgatcattgtattcagtgcctaccatgaaaatcactaacagtgtaggataatttacattacctgtgtacagtattcctaccatgcaagtaggcaagccctgaaagaatctgccgagtataattacgaatcacaggttccttaaatggaccgtactctctaagtaatttatgaattgaacctccagaaacatattccagatagatggacagagcttcatcagcctgctcaaaattgtttaaattaggcaagccaaagcttaatgagaactttcagaaaataagtgaacaatcacacaaaattagtaaaactgatggtgtctcctttcttggtggaaactggaaccagggcgtataccctctgattttagaaaagaggaaaaggacaaagcatgcacgattaagcattagaaccaaaattgatgcataaatttatgctctgtgcaccagagagtgagtctatgcatcatcagattagttcccaccaaaaaaaatgttataattttccctcacagatccatcttgtaatgagcaacgcacaatacaaatatgctaagatgagaaagaataaaattatgtggctgcatgacatgcttattgaacaattagtcaataatcatattgaacctaccagttcacttccataatattgcacgatattttggtgcgagagctgcttaagcatatctatttcctgtcattacaagatggacaagttaataaaccaaaacaggatgtagtcagagacaggttggaaaagtgtttgtgttacaataaaaataaattgttcaaaatgacacacagcctatcaattgtatagggcaatcaaatgacctgattcaattgcctaaggcgttcctttgaatgtgaatcgtccaaaaaaacctgcacctccttgattgcacaaaactgcccattttcactgtacaacgccaattaagatcaatcacaagatggcaacaataagagtcaagagtgaaatagattcatagaaatagttctaagattttctttcatgctctcatgtgatgccaaaaaagtgtgttgtgtagcaacttttgtttaaggaaattaaatagaaccatgtatacatgtgataattatgacttcacataccccctctcctcctttttctatgttctagcctaccgaattgaacatgtgggtccacataaatatcaaacttttgtgcatgtacgtaatcaaattacacatagcaacattttgggtatacagccttagacagaaaaacaaaggatttagctgcgatctagccatagaactaaaattctatataaacttcaaagatgaacctgcatggatgcaaagtacatgaaaaaatgagtcacattcatagtaacttctttgggtgaacttcgaaaccatattattcttttaatgttctataagataaacctccatacctgttgaaaccaagataaacctgaccaaatgtgccgctacctaatagcttcccccttttccactgtgattggaattgactagaagtaatggaagatgaaggaatggatgagctagcaacaggaactggagggagaggcaagggttgagatggactcctaggatcatccatccttttcactggtgaccttggggtaaacccaaaatctcttgcgcagcaagcagaataagcatgccctctcggaccaggggaatgacttcttggtcttacagcaaatgtatcctcaggcaacattctgccccgagaataactagattcacttgttgaaggttcaaagatttgcatgtgatgaacttcgttcacatttgcaataggaacctcaaagaatttttgatgctcctggagaataccacatgatacaaaacgcttctcttctaccatgccattatgaccatcaggtagcacagtccttccgctagtgtggacaactggatctgtatacctacagattccaacaacaaacaggaaatatcagaggacttccaggactgtaggaacagattgtcgaaaaacaaaataggtcatctttcaatagaaaacaaaatagagccaaacagggacactatcagaaagggcaaaggcatgaaacacgcactataactacaggcagaaagaaaagaaccatcaatgtgttgaaatttagcttgacgccataaaaagatgcattcttttatgctctggcatcattcttgaaggaacagataatgctactcctagcatagaaacacctcggcgtcatttccatagaatgatcgtgaggaaaacagtagatattctatttatctataagtagccaccgtatttgttctacgccaagaaattcccacgctaatcaaagatgagaaagatttgcgtctccaagtggaacaaagcattcatttccatagaatgattgttaggaatacattagacattctatctatctataagtagccgccatgtttgttctatgcctaaaaaatttccacgttaacgaaagatgagaaagatttgcgctgttttagattacaacggtgcagatttattgataaaggtttacataagacaaacttgttcttatcaaagcaggaatagttgtatatcaaatccaattctatctgggcaaaattgcgcgggaattccacgcaaacaaattacgcgggaaattctgttagttaacaatatcataaatatcctagcataaaatatcttaaatacaattgaatgaataaaaaagaaggatgggttgaacttttgacgcgctttggtagcctgactccccaagtccaccgaattatactagtaataaacaaaggaatacggttttgtacgctataggcggtgagagaagagacgaggtcaacggccgtatggcagttgttgcgaagcctcagtctccacacagtttggtcttttagaagtcaactcaagacccctaaatcacactatcactcggcacacttcgtgattactactaacgaactggaaaaagggtaatcgcgtcgaattcgttgcgatcacggtttggagttgtagcagctacgcccataattggagtacccgaccaaaccgaaacaaaaacaaaaacaaaaatgaaaaaaaaatagcaggtcggtagctgtaaaacggagcagccagtacgaagcaaatcacctgtaattccggtgatccgcctcgtcgtccgacgagctcccgcccgagaccgactcggccgccgacgcgcacgccggcggcgacggcgacggcggcgccgcggcgg
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| CDS seq | atggtagaagagaagcgttttgtatcatgtggtattctccaggagcatcaaaaattctttgaggttcctattgcaaatgtgaacgaagttcatcacatgcaaatctttgaaccttcaacaagtgaatctagttattctcggggcagaatgttgcctgaggatacatttgctgtaagaccaagaagtcattcccctggtccgagagggcatgcttattctgcttgctgcgcaagagattttgggtttaccccaaggtcaccagtgaaaaggatggatgatcctaggagtccatctcaacccttgcctctccctccagttcctgttgctagctcatccattccttcatcttccattacttctagtcaattccaatcacagtggaaaagggggaagctattaggtagcggcacatttggtcaggtttatcttggtttcaacagtgaaaatgggcagttttgtgcaatcaaggaggtgcaggtttttttggacgattcacattcaaaggaacgccttaggcaattgaatcaggaaatagatatgcttaagcagctctcgcaccaaaatatcgtgcaatattatggaagtgaactggctgatgaagctctgtccatctatctggaatatgtttctggaggttcaattcataaattacttagagagtacggtccatttaaggaacctgtgattcgtaattatactcggcagattctttcagggcttgcctacttgcatggtaggaatactgtacacagagacattaaaggagcaaacatacttgtgggccctaatggtgaagtcaaacttgcggactttggcatggctaaacatgtgacatctttcgccgaaatacgctctttcagaggaagcccatactggatggctcctgaggttgtaatgaataacaaaggatataatcttgcggttgatatatggagccttggatgtacaattattgagatggcaaccgcgaagcatccctggtatccgtatgaagatgtggcagcaatatttaaaattgcaaacagtaaagatataccagaaattccagattgtttttccaaagaagggaaagatttcctaagtttgtgcttaaagcgtgatccagtacagaggccttctgcagcttcgttgctgggtcacccttttgtccatgaccatcaggctgtaagagcaccaacatgcaatggtactcagttgagaaatggaatttcttcccctgcagcaagtcatagaaagccaaacagagaatcctcgtcaaggagaaacattgctcctctgcatggtatcgcaggactaagcgcaagggaattcgctggattttccacagcctatccttctcctcacaatacctccagcagcccaactgcagtgagagcaaacatgtctttaccggtgtcgccatgctcaagcccgctgcggcagttcaagcaatcaaactggagctgcctcccttcaccaacgcatccggcgctctcccctggattatcagcagcagcctacccaaacaatcccttgcagaaccagtcgaggcgaagcgccgcagttccagatccctggctggagttgagccagccgagacctccaagcccatatggctctccaaagagattctag
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| Protein seq | MVEEKRFVSCGILQEHQKFFEVPIANVNEVHHMQIFEPSTSESSYSRGRMLPEDTFAVRPRSHSPGPRGHAYSACCARDFGFTPRSPVKRMDDPRSPSQPLPLPPVPVASSSIPSSSITSSQFQSQWKRGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVFLDDSHSKERLRQLNQEIDMLKQLSHQNIVQYYGSELADEALSIYLEYVSGGSIHKLLREYGPFKEPVIRNYTRQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHVTSFAEIRSFRGSPYWMAPEVVMNNKGYNLAVDIWSLGCTIIEMATAKHPWYPYEDVAAIFKIANSKDIPEIPDCFSKEGKDFLSLCLKRDPVQRPSAASLLGHPFVHDHQAVRAPTCNGTQLRNGISSPAASHRKPNRESSSRRNIAPLHGIAGLSAREFAGFSTAYPSPHNTSSSPTAVRANMSLPVSPCSSPLRQFKQSNWSCLPSPTHPALSPGLSAAAYPNNPLQNQSRRSAAVPDPWLELSQPRPPSPYGSPKRF |
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| Function | Mitogen-activated protein kinase kinase kinase 3 [UniProtKB/Swiss-Prot:F4HRJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0021190 | OsCMeo_02g0021190.01 | Chr02 | 21250632 | 21256417 | - | NAM | ||
| CDS seq | atggtagaagagaagcgttttgtatcatgtggtattctccaggagcatcaaaaattctttgaggttcctattgcaaatgtgaacgaagttcatcacatgcaaatctttgaaccttcaacaagtgaatctagttattctcggggcagaatgttgcctgaggatacatttgctgtaagaccaagaagtcattcccctggtccgagagggcatgcttattctgcttgctgcgcaagagattttgggtttaccccaaggtcaccagtgaaaaggatggatgatcctaggagtccatctcaacccttgcctctccctccagttcctgttgctagctcatccattccttcatcttccattacttctagtcaattccaatcacagtggaaaagggggaagctattaggtagcggcacatttggtcaggtttatcttggtttcaacagtgaaaatgggcagttttgtgcaatcaaggaggtgcaggtttttttggacgattcacattcaaaggaacgccttaggcaattgaatcaggaaatagatatgcttaagcagctctcgcaccaaaatatcgtgcaatattatggaagtgaactggctgatgaagctctgtccatctatctggaatatgtttctggaggttcaattcataaattacttagagagtacggtccatttaaggaacctgtgattcgtaattatactcggcagattctttcagggcttgcctacttgcatggtaggaatactgtacacagagacattaaaggagcaaacatacttgtgggccctaatggtgaagtcaaacttgcggactttggcatggctaaacatgtgacatctttcgccgaaatacgctctttcagaggaagcccatactggatggctcctgaggttgtaatgaataacaaaggatataatcttgcggttgatatatggagccttggatgtacaattattgagatggcaaccgcgaagcatccctggtatccgtatgaagatgtggcagcaatatttaaaattgcaaacagtaaagatataccagaaattccagattgtttttccaaagaagggaaagatttcctaagtttgtgcttaaagcgtgatccagtacagaggccttctgcagcttcgttgctgggtcacccttttgtccatgaccatcaggctgtaagagcaccaacatgcaatggtactcagttgagaaatggaatttcttcccctgcagcaagtcatagaaagccaaacagagaatcctcgtcaaggagaaacattgctcctctgcatggtatcgcaggactaagcgcaagggaattcgctggattttccacagcctatccttctcctcacaatacctccagcagcccaactgcagtgagagcaaacatgtctttaccggtgtcgccatgctcaagcccgctgcggcagttcaagcaatcaaactggagctgcctcccttcaccaacgcatccggcgctctcccctggattatcagcagcagcctacccaaacaatcccttgcagaaccagtcgaggcgaagcgccgcagttccagatccctggctggagttgagccagccgagacctccaagcccatatggctctccaaagagattctag
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| Protein seq | MVEEKRFVSCGILQEHQKFFEVPIANVNEVHHMQIFEPSTSESSYSRGRMLPEDTFAVRPRSHSPGPRGHAYSACCARDFGFTPRSPVKRMDDPRSPSQPLPLPPVPVASSSIPSSSITSSQFQSQWKRGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVFLDDSHSKERLRQLNQEIDMLKQLSHQNIVQYYGSELADEALSIYLEYVSGGSIHKLLREYGPFKEPVIRNYTRQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHVTSFAEIRSFRGSPYWMAPEVVMNNKGYNLAVDIWSLGCTIIEMATAKHPWYPYEDVAAIFKIANSKDIPEIPDCFSKEGKDFLSLCLKRDPVQRPSAASLLGHPFVHDHQAVRAPTCNGTQLRNGISSPAASHRKPNRESSSRRNIAPLHGIAGLSAREFAGFSTAYPSPHNTSSSPTAVRANMSLPVSPCSSPLRQFKQSNWSCLPSPTHPALSPGLSAAAYPNNPLQNQSRRSAAVPDPWLELSQPRPPSPYGSPKRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.393410 | 3.123955 | 4.521783 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0555900 | RBH | 2.092030 | 1.699361 | 0.998908 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35010 | RBH | 1.635536 | 1.629437 | 0.457851 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0555900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021120 | RBH | 0.250863 | 2.972961 | 1.437026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021200 | RBH | 0.172999 | 0.546246 | 0.933411 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014670 | RBH | 4.619674 | 16.656530 | 19.877020 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020930 | RBH | 0.136410 | 0.088398 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020850 | RBH | 2.713859 | 0.000000 | 12.163851 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0346300 | RBH | 2.6469 | 22.907527 | 19.1187155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020580 | RBH | 0.073355 | 0.075097 | 1.041433 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0371700 | RBH | 7.544248 | 32.949284 | 7.30313 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021060 | RBH | 0.480783 | 0.070837 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020800 | RBH | 0.552245 | 2.999901 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021250 | RBH | 1.768569 | 9.176357 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020940 | RBH | 0.482701 | 0.584247 | 0.428217 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020770 | RBH | 0.089377 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021200 | RBH | 0.461417 | 0.000000 | 0.805571 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020950 | RBH | 0.000000 | 3.388838 | 4.975317 |
