Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0015210 | OGI:01059530 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:13455183-13459550 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tctggcatcgaaaagaaactacaagtcatagttgttttgagattaatttgaaagcaagatatatgttatcattatagaagtgtagtgcaacctttttggcgcataaaacaatctcatggcgtttattaaattataaaaagcaacatagatagaagacagctatgaaaatttgatgatgtcatacaaataaagcacaagcaaaaaatatggaacatccagcatttctagatacggtaattctaatggatgatcacctcaaattaaatcactccatatagttaaataactaccctaatgttgtgcattttttatacacttcagaaaatcttgtgcgccgttaggaatattgctttcacactcattttgttggtacatcagtagatttagcaaaaaaaagtttccttagctcgtcactatcctgcacatgtatttataataagttaaatattggtaaatataaaataatgtattatatgtataatcaatgcctatcacgacttacattaatagccgacaaatgtggttctttatttttccatgtacacatgaagagatgaacaacaaaacccgataaactcctaaggaaatttgatagttagctacccttgcactacagaattaaatttattggtttgaacgagtttttagaagataacttacctgtcgaaaaccggattattgacaaatacttgcctccacaagttgatgtcttcattccacctagagccagggcatgccttcctcatagctttgttaaagtggtcacaaatagttatcagttttctggtgtatctcatgtttgggttatttttatattctggcataagtggatttgggtctaatacatagagtgtttgactttattggtccactatgagcacgataaagcttcgagcatggcgtactggtataagaatctacaaaagatcaactgtcaagataatatataaaacacgaccatataggatcaaatcttagtgatcttaccgctttgcaatgtgaaagtttgtaatgaatttccgaccaactaccaatggtcttttcaagatgtacgttgtcatggtggaccgggtctttaccaaagccactagcgctctacatgatttaaaaaatggttcaattacataagcaataatcaatatattcgatattgtgattgtagataataacatgagcaatagagaatgacatgagcattagattttaagtacttacccaaaattgcaagtccaggcaatgattcgatattgcttctttagttttatgaattgtctggattttttcatacatgaactttcgtatagccatgttgaagcaatcactttccaatggctcatccttctttagtattgattgaagctgtttgagactcaagctaataaagtgcggccttgaactttgtacttatattttcttgtcaatcaaagaaaataagttaatgcatgtttgaattacgtttgtgtatacaatgcattgcagtggcttactccatggcttcggcacaattcatctgttggatgtactgcaaaaggccgctcatcaactcttgtttactcatcgtagataccacggagagtagtgaactatattttttgtttacttctttactttcattgatgtcccttttagagccgaatttctgttgatgactacccaatataacaacatcgtcatcactgtctttggtatcttcgatttgttccctggtcgtcatgaccgccttatttgttttccaacataataatacactcaccccatagtttggattaatctaatatatataatgtatgcacccaataaaattagagatcttggtggagagtttaaataataatattttagtggagaagatgtgttagttaatgacatacatgcatgtatgccttatattataaaacaattgtaaaaagtagttgtgccttatattatggaataaagggagtatgtgaaacaataatgtaccgcacatttctccactacaattaatcaatgttaacattacagtccatttagataaaatgctggctaaatgcatgagattgagtacattcttcaaaaagttgtccaacgtaagtactatttcaatgggtgaccatgtgtattcaacatatttatttattttttttgtttttgcattgttttacaatacatcaatttttttcttaaaaaatatttgcaacattagttatgatctgaatctcatacatttttaatcaagcatattgactactgttcgattggtaataataaccattagtatgaacacaaaatttcattcaggcaaaaactacgaatttacctgtatttgcaggtagtgtatggctgttttgtgttgcaccttgaagtatgcagctgaaaggggatccagtgtgatccacattatcatactgagctacattgttgatcactgtaaatggtagacaccgaggtgtgatcatgtgttgttgatcacttcctgttggaacgtagaacattactttcaaaacaactgtatcaccatattgtttgtgcaagataaatgtaagaatgaagatgttaccaggtccagtcctatcaacgggctgtaataatgcatggtttgatccttgctgcagtgtagaacaatcatttacgtggcatcttcttaaatcatcaacactaacatttgtaatatcaccaagtggagctgcccacatgcaacaatattaaaaactggtttggcatataattgtgattatgtaggaacctttgacataattagtagttgtttgagttaaacctgagtattcatcctccttcaattgcttgtacacacgggccttcattttcctcgcctcctttttctttgggctcattgatgcatacctctctctagcacgcttccttcttaattctaatgcgctgagtttagcaccatcttcttgcagttctgtgcacacatgcaaattatgttaatgttaactctagtaggtagaaaatggaaaatcataacttgcatattttacatttcggattcatactttgcatattttccttttgaggcacattgtttatacgtgattcccccgcgctcgtattagtaatatcggcaaacggggctgagggaggaaatattgcgaaatcaatatgcaagtcacatatgaatggactgaatattagtcacatatgtaaaccgataaaaaaactcacttgattttgttaacgatgttggtgtgaagaccccaatattgttacgttttttgggcgaatccccagcactcgcattattaatatcagcaaaagggcctgagggaggaaatcattcgaaatcagcatgcaaaacacatcttaatgcactgaataatttgcccttaaatagagcgataaaaaaactcacatgatcttcttaacgatgttggtgtggagcccccaatattgttatccatatcttaatgtgtgtaagccagctgtacagtataaaaggccacaatgtcatcatataaattagcaagtctaacaatgctaaggtttagctaactaaagaacctctcaacgaaaaccgattacagcagcctgcaggggatccatcagcaggaagaacaaataaaaaaaacataggatattccattgtgtttcccaatttgtactgaagaaatagcattacaaattgttctgttaaaggtgtttcccatatggatttttctgtacccttgtaactgtaaaagctccaaatatctgtactgcaaaatccatgcatgtttataaaataattaattagtggataaaagctcaaactggaggggtacatgtgcagctaaaatagctcatgcatggagtatccataagcatgtgcaaaacctattcagagttgcatggtaaacaggaatccaaatgctcttacggcatataatttgtacatccatctgttcatgttgaaaattcattactgaaaagtatataaccaattgctaaaggggagctcttagggtataataggtaatgaatcttttgttttgaaacgaggcattgatgagctgcaaagaatatgaagaaattggctcacaaaggcggcacgaaggcggcgcacaagcgcagttccaatccggcggcggtggatggaggcacgggcagtgtcggcgaagactggaatggtggaggagaaccccagaaccaaggcctggcggcaggcttgttacctgcaagaagaaattctctgattagtttgcttttgaacttttcatctgataacagaaagaaaatctgattcagacaaatgtaaatatgatctcagtttggtagatcaaaaagaaatgaagaaaaatcgcaagcagatttcacaatagtaaatccacatgaacagatgtatataaaaacagattgtacattaagctgcattgccgtcgacattat
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| CDS seq | atgagcccaaagaaaaaggaggcgaggaaaatgaaggcccgtgtgtacaagcaattgaaggaggatgaatactcaggtttaactcaaacaactactaattatgtcaaagctccacttggtgatattacaaatgttagtgttgatgatttaagaagatgccacgtaaatgattgttctacactgcagcaaggatcaaaccatgcattattacagcccgttgataggactggacctggaagtgatcaacaacacatgatcacacctcggtgtctaccatttacagtgatcaacaatgtagctcagtatgataatgtggatcacactggatcccctttcagctgcatacttcaaggtgcaacacaaaacagccatacactacctgcaaatacagtacaaagttcaaggccgcactttattagcttgagtctcaaacagcttcaatcaatactaaagaaggatgagccattggaaagtgattgcttcaacatggctatacgaaagttcatgtatgaaaaaatccagacaattcataaaactaaagaagcaatatcgaatcattgcctggacttgcaattttggagcgctagtggctttggtaaagacccggtccaccatgacaacgtacatcttgaaaagaccattggtagttggtcggaaattcattacaaactttcacattgcaaagcgattcttataccagtacgccatgctcgaagctttatcgtgctcatagtggaccaataa
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| Protein seq | MSPKKKEARKMKARVYKQLKEDEYSGLTQTTTNYVKAPLGDITNVSVDDLRRCHVNDCSTLQQGSNHALLQPVDRTGPGSDQQHMITPRCLPFTVINNVAQYDNVDHTGSPFSCILQGATQNSHTLPANTVQSSRPHFISLSLKQLQSILKKDEPLESDCFNMAIRKFMYEKIQTIHKTKEAISNHCLDLQFWSASGFGKDPVHHDNVHLEKTIGSWSEIHYKLSHCKAILIPVRHARSFIVLIVDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0015210 | OsKeNa_02g0015210.01 | Chr02 | 13455183 | 13459550 | - | NAM | ||
| CDS seq | atgagcccaaagaaaaaggaggcgaggaaaatgaaggcccgtgtgtacaagcaattgaaggaggatgaatactcaggtttaactcaaacaactactaattatgtcaaagctccacttggtgatattacaaatgttagtgttgatgatttaagaagatgccacgtaaatgattgttctacactgcagcaaggatcaaaccatgcattattacagcccgttgataggactggacctggaagtgatcaacaacacatgatcacacctcggtgtctaccatttacagtgatcaacaatgtagctcagtatgataatgtggatcacactggatcccctttcagctgcatacttcaaggtgcaacacaaaacagccatacactacctgcaaatacagtacaaagttcaaggccgcactttattagcttgagtctcaaacagcttcaatcaatactaaagaaggatgagccattggaaagtgattgcttcaacatggctatacgaaagttcatgtatgaaaaaatccagacaattcataaaactaaagaagcaatatcgaatcattgcctggacttgcaattttggagcgctagtggctttggtaaagacccggtccaccatgacaacgtacatcttgaaaagaccattggtagttggtcggaaattcattacaaactttcacattgcaaagcgattcttataccagtacgccatgctcgaagctttatcgtgctcatagtggaccaataa
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| Protein seq | MSPKKKEARKMKARVYKQLKEDEYSGLTQTTTNYVKAPLGDITNVSVDDLRRCHVNDCSTLQQGSNHALLQPVDRTGPGSDQQHMITPRCLPFTVINNVAQYDNVDHTGSPFSCILQGATQNSHTLPANTVQSSRPHFISLSLKQLQSILKKDEPLESDCFNMAIRKFMYEKIQTIHKTKEAISNHCLDLQFWSASGFGKDPVHHDNVHLEKTIGSWSEIHYKLSHCKAILIPVRHARSFIVLIVDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.386249 | 0.757399 | 4.026882 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0480200 | SBH | 1.289702 | 1.089188 | 2.803492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g22590 | RBH | 1.303131 | 1.100120 | 0.096318 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0480200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015030 | RBH | 0.527182 | 2.942228 | 5.936432 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0012470 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015100 | RBH | 1.646762 | 3.298887 | 21.614738 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014960 | RBH | 0.477070 | 0.045538 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016940 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016720 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017250 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016820 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017370 | SBH | 0.167881 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017160 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020790 | RBH | 0.000000 | 6.963462 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017310 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015030 | RBH | 1.050407 | 0.000000 | 3.963372 |
