Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g22590 | OGI:01059530 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:13467710-13470242 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATGAGCACGATAAAGCTTCGAGCATGGCGTACTGGTATAAGAATCTACAAAAGATCAACTGTCAAGATAATATATAAAACACGACCATATAGGATCAAATCTTAGTGATCTTACCGCTTTGCAATGTGAAAGTTTGTAATGAATTTCCGACCAACTACCAATGGTCTTTTCAAGATGTACGTTGTCATGGTGGACCGGGTCTTTACCAAAGCCACTAGCGCTCTACATGATTTAAAAAATGGTTCAATTACATAAGCAATAATCAATATATTCGATATTGTGATTGTAGATAATAACATGAGCAATAGAGAATGACATGAGCATTAGATTTTAAGTACTTACCCAAAATTGCAAGTCCAGGCAATGATTCGATATTGCTTCTTTAGTTTTATGAATTGTCTGGATTTTTTCATACATGAACTTTCGTATAGCCATGTTGAAGCAATCACTTTCCAATGGCTCATCCTTCTTTAGTATTGATTGAAGCTGTTTGAGACTCAAGCTAATAAAGTGCGGCCTTGAACTTTGTACTTATATTTTCTTGTCAATCAAAGAAAATAAGTTAATGCATGTTTGAATTACGTTTGTGTATACAATGCATTGCAGTGGCTTACTCCATGGCTTCGGCACAATTCATCTGTTGGATGTACTGCAAAAGGCCGCTCATCAACTCTTGTTTACTCATCGTAGATACCACGGAGAGTAGTGAACTATATTTTTTGTTTACTTCTTTACTTTCATTGATGTCCCTTTTAGAGCCGAATTTCTGTTGATGACTACCCAATATAACAACATCGTCATCACTGTCTTTGGTATCTTCGATTTGTTCCCTGGTCGTCATGACCGCCTTATTTGTTTTCCAACATAATAATACACTCACCCCATAGTTTGGATTAATCTAATATATATAATGTATGCACCCAATAAAATTAGAGATCTTGGTGGAGAGTTTAAATAATAATATTTTAGTGGAGAAGATGTGTTAGTTAATGACATACATGCATGTATGCCTTATATTATAAAACAATTGTAAAAAGTAGTTGTGCCTTATATTATGGAATAAAGGGAGTATGTGAAACAATAATGTACCGCACATTTCTCCACTACAATTAATCAATGTTAACATTACAGTCCATTTAGATAAAATGCTGGCTAAATGCATGAGATTGAGTACATTCTTCAAAAAGTTGTCCAACGTAAGTACTATTTCAATGGGTGACCATGTGTATTCAACATATTTATTTATTTTTTTTGTTTTTGCATTGTTTTACAATACATCAATTTTTTTCTTAAAAAATATTTGCAACATTAGTTATGATCTGAATCTCATACATTTTTAATCAAGCATATTGACTACTGTTCGATTGGTAATAATAACCATTAGTATGAACACAAAATTTCATTCAGGCAAAAACTACGAATTTACCTGTATTTGCAGGTAGTGTATGGCTGTTTTGTGTTGCACCTTGAAGTATGCAGCTGAAAGGGGATCCAGTGTGATCCACATTATCATACTGAGCTACATTGTTGATCACTGTAAATGGTAGACACCGAGGTGTGATCATGTGTTGTTGATCACTTCCTGTTGGAACGTAGAACATTACTTTCAAAACAACTGTATCACCATATTGTTTGTGCAAGATAAATGTAAGAATGAAGATGTTACCAGGTCCAGTCCTATCAACGGGCTGTAATAATGCATGGTTTGATCCTTGCTGCAGTGTAGAACAATCATTTACGTGGCATCTTCTTAAATCATCAACACTAACATTTGTAATATCACCAAGTGGAGCTGCCCACATGCAACAATATTAAAAACTGGTTTGGCATATAATTGTGATTATGTAGGAACCTTTGACATAATTAGTAGTTGTTTGAGTTAAACCTGAGTATTCATCCTCCTTCAATTGCTTGTACACACGGGCCTTCATTTTCCTCGCCTCCTTTTTCTTTGGGCTCATTGATGCATACCTCTCTCTAGCACGCTTCCTTCTTAATTCTAATGCGCTGAGTTTAGCACCATCTTCTTGCAGTTCTGTGCACACATGCAAATTATGTTAATGTTAACTCTAGTAGGTAGAAAATGGAAAATCATAACTTGCATATTTTACATTTCGGATTCATACTTTGCATATTTTCCTTTTGAGGCACATTGTTTATACGTGATTCCCCCGCGCTCGTATTAGTAATATCGGCAAACGGGGCTGAGGGAGGAAATATTGCGAAATCAATATGCAAGTCACATATGAATGGACTGAATATTAGTCACATATGTAAACCGATAAAAAAACTCACTTGATTTTGTTAACGATGTTGGTGTGAAGACCCCAATATTGTTACGTTTTTTGGGCGAATCCCCAGCACTCGCATTATTAATATCAGCAAAAGGGCCTGAGGGAGGAAATCATTCGAAATCAGCATGCAAAACACATCTTAATGCACTGAATAATTTGCCCTTAAATAGAGCGATAAAAAAACTCACATGATCTTCTTAACGATGTTGGTGTGGAGCCCCCAATATTGTTATCCAT
More
|
||||||||||
| CDS seq | ATGGATAACAATATTGGGGGCTCCACACCAACATCGTTAAGAAGATCATGCCCTTTTGCTGATATTAATAATGCGAGTGCTGGGGATTCGCCCAAAAAACGTAACAATATTGGGGTCTTCACACCAACATCGTTAACAAAATCAAAACTGCAAGAAGATGGTGCTAAACTCAGCGCATTAGAATTAAGAAGGAAGCGTGCTAGAGAGAGGTATGCATCAATGAGCCCAAAGAAAAAGGAGGCGAGGAAAATGAAGGCCCGTGTGTACAAGCAATTGAAGGAGGATGAATACTCAGGTTTAACTCAAACAACTACTAATTATGTCAAAGCTCCACTTGGTGATATTACAAATGTTAGTGTTGATGATTTAAGAAGATGCCACGTAAATGATTGTTCTACACTGCAGCAAGGATCAAACCATGCATTATTACAGCCCGTTGATAGGACTGGACCTGGAAGTGATCAACAACACATGATCACACCTCGGTGTCTACCATTTACAGTGATCAACAATGTAGCTCAGTATGATAATGTGGATCACACTGGATCCCCTTTCAGCTGCATACTTCAAGGTGCAACACAAAACAGCCATACACTACCTGCAAATACAGTGGAGAAATGTGCGAGCGCTAGTGGCTTTGGTAAAGACCCGGTCCACCATGACAACGTACATCTTGAAAAGACCATTGGTAGTTGGTCGGAAATTCATTACAAACTTTCACATTGCAAAGCGTTGATCTTTTGTAGATTCTTATACCAGTACGCCATGCTCGAAGCTTTATCGTGCTCATAG
More
|
||||||||||
| Protein seq | MDNNIGGSTPTSLRRSCPFADINNASAGDSPKKRNNIGVFTPTSLTKSKLQEDGAKLSALELRRKRARERYASMSPKKKEARKMKARVYKQLKEDEYSGLTQTTTNYVKAPLGDITNVSVDDLRRCHVNDCSTLQQGSNHALLQPVDRTGPGSDQQHMITPRCLPFTVINNVAQYDNVDHTGSPFSCILQGATQNSHTLPANTVEKCASASGFGKDPVHHDNVHLEKTIGSWSEIHYKLSHCKALIFCRFLYQYAMLEALSCS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g22590 | LOC_Os02g22590.1 | Chr02 | 13467710 | 13470242 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATAACAATATTGGGGGCTCCACACCAACATCGTTAAGAAGATCATGCCCTTTTGCTGATATTAATAATGCGAGTGCTGGGGATTCGCCCAAAAAACGTAACAATATTGGGGTCTTCACACCAACATCGTTAACAAAATCAAAACTGCAAGAAGATGGTGCTAAACTCAGCGCATTAGAATTAAGAAGGAAGCGTGCTAGAGAGAGGTATGCATCAATGAGCCCAAAGAAAAAGGAGGCGAGGAAAATGAAGGCCCGTGTGTACAAGCAATTGAAGGAGGATGAATACTCAGGTTTAACTCAAACAACTACTAATTATGTCAAAGCTCCACTTGGTGATATTACAAATGTTAGTGTTGATGATTTAAGAAGATGCCACGTAAATGATTGTTCTACACTGCAGCAAGGATCAAACCATGCATTATTACAGCCCGTTGATAGGACTGGACCTGGAAGTGATCAACAACACATGATCACACCTCGGTGTCTACCATTTACAGTGATCAACAATGTAGCTCAGTATGATAATGTGGATCACACTGGATCCCCTTTCAGCTGCATACTTCAAGGTGCAACACAAAACAGCCATACACTACCTGCAAATACAGTGGAGAAATGTGCGAGCGCTAGTGGCTTTGGTAAAGACCCGGTCCACCATGACAACGTACATCTTGAAAAGACCATTGGTAGTTGGTCGGAAATTCATTACAAACTTTCACATTGCAAAGCGTTGATCTTTTGTAGATTCTTATACCAGTACGCCATGCTCGAAGCTTTATCGTGCTCATAG
More
|
|||||||
| Protein seq | MDNNIGGSTPTSLRRSCPFADINNASAGDSPKKRNNIGVFTPTSLTKSKLQEDGAKLSALELRRKRARERYASMSPKKKEARKMKARVYKQLKEDEYSGLTQTTTNYVKAPLGDITNVSVDDLRRCHVNDCSTLQQGSNHALLQPVDRTGPGSDQQHMITPRCLPFTVINNVAQYDNVDHTGSPFSCILQGATQNSHTLPANTVEKCASASGFGKDPVHHDNVHLEKTIGSWSEIHYKLSHCKALIFCRFLYQYAMLEALSCS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.303131 | 1.100120 | 0.096318 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015030 | RBH | 0.527182 | 2.942228 | 5.936432 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015210 | RBH | 0.386249 | 0.757399 | 4.026882 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015100 | RBH | 1.646762 | 3.298887 | 21.614738 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014960 | RBH | 0.477070 | 0.045538 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018900 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015030 | RBH | 1.050407 | 0.000000 | 3.963372 |
