Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0012370 | OGI:02028480 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:10166507-10168045 | ||||||||
| Gene Symbol | OsbHLH072 | ||||||||||
| DNA seq | ttaactgtagcttgagccggagagggttcttgggtcctggccttcttgaaagctgctccagatgctgtgctgatgcactaggagaaacacaaaaggatggagagcaaagttacaaaactttcatacataactaattaattatcaacatggctccctatcttaactgcttccaggaggagtgaaactttcatgcatggttatctacccacacaaagctattagtattgaatctctctttctaaccatccaaaaggtgatgatgagcttcctcaaagaaagactttttcacccaccctcactcctcagtaaatgataagcacctaaaataatctacacacaaacaaaaattaccagactgattatcttgaatgatgattgtccctacctcacgtggtgaagtgttgtttgagaactccagcacgccgttgcttccaagggaggtggtagaggtgatgcaagaagacctaggggaggaagcttgctgctgcaaggcgttgtggtgggggtgatggccatggatgccaccccatggagaagacgacggccttgcagccactgccaattgggaagcatcatcactcgtgctgctcccatggctagtcgtggtggtgctgtagatgttgttgtagctgttgctcccatgatcagcttctgcagcagctgcagctggtgtagttgggaacagcacctggccttcccagttcttgttgtacccctcttcaccactagccaatccaccactggatgatcacaatatatatgaccatgtaaagagggagagatgaggtttttagcacaatattatttcatgtagctgttcagaagaattctagaaacagaccatttccaagaataatatcaagttaatcaattacaaacatataaataaaaaaagagagaatgtgtgtgtgtgaattacagtaagatatggttccatgagtcctggagatgttggccgtggcggctgccggtgtcgtgccaaggcgcggcggcggtgcttgtcgtcgcagtagaaggaagaggatagtgattcgagagcagcagggaggagaaggaatggaggggagaggaggaggaggagggagtagtggaggtggtggtggaggatggcaagaaaagagaagccggattgtgaagctgctcaacaaaggggggcctcaaattattcacactccaccatccatggccttcccccatctcccccactagagctgatgatttgtggaggactcccctatccatattccctctcccttgatatgctgatatgatcttccacccaagcaagctagctatactagcaaccaagcaacaaggtagcactcacttgatctctctttctctcactcactctctctctctagcttttgctcactctctccacaggctctctctctcagctagctagtgatctccttttacaccttgaggtcaacctttagagagagagagagagaGggggggggagggagAaagcatatgagcctttggagggaagggaatctctcatgggcataagaacttattagtggaggagtg
More
|
||||||||||
| CDS seq | atggataggggagtcctccacaaatcatcagctctagtgggggagatgggggaaggccatggatggtggagtgtgaataatttgaggcccccctttgttgagcagcttcacaatccggcttctcttttcttgccatcctccaccaccacctccactactccctcctcctcctcctctcccctccattccttctcctccctgctgctctcgaatcactatcctcttccttctactgcgacgacaagcaccgccgccgcgccttggcacgacaccggcagccgccacggccaacatctccaggactcatggaaccatatcttacttggtggattggctagtggtgaagaggggtacaacaagaactgggaaggccaggtgctgttcccaactacaccagctgcagctgctgcagaagctgatcatgggagcaacagctacaacaacatctacagcaccaccacgactagccatgggagcagcacgagtgatgatgcttcccaattggcagtggctgcaaggccgtcgtcttctccatggggtggcatccatggccatcacccccaccacaacgccttgcagcagcaagcttcctcccctaggtcttcttgcatcacctctaccacctcccttggaagcaacggcgtgctggagttctcaaacaacacttcaccacgtgaggtagggacaatcatcattcaagataatcagtctgtgcatcagcacagcatctggagcagctttcaagaaggccaggacccaagaaccctctccggctcaagctacagttaa
More
|
||||||||||
| Protein seq | MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPASLFLPSSTTTSTTPSSSSSPLHSFSSLLLSNHYPLPSTATTSTAAAPWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNKNWEGQVLFPTTPAAAAAEADHGSNSYNNIYSTTTTSHGSSTSDDASQLAVAARPSSSPWGGIHGHHPHHNALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPREVGTIIIQDNQSVHQHSIWSSFQEGQDPRTLSGSSYS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0012370 | OsKeNa_02g0012370.01 | Chr02 | 10166507 | 10168045 | - | NAM | ||
| CDS seq | atggataggggagtcctccacaaatcatcagctctagtgggggagatgggggaaggccatggatggtggagtgtgaataatttgaggcccccctttgttgagcagcttcacaatccggcttctcttttcttgccatcctccaccaccacctccactactccctcctcctcctcctctcccctccattccttctcctccctgctgctctcgaatcactatcctcttccttctactgcgacgacaagcaccgccgccgcgccttggcacgacaccggcagccgccacggccaacatctccaggactcatggaaccatatcttacttggtggattggctagtggtgaagaggggtacaacaagaactgggaaggccaggtgctgttcccaactacaccagctgcagctgctgcagaagctgatcatgggagcaacagctacaacaacatctacagcaccaccacgactagccatgggagcagcacgagtgatgatgcttcccaattggcagtggctgcaaggccgtcgtcttctccatggggtggcatccatggccatcacccccaccacaacgccttgcagcagcaagcttcctcccctaggtcttcttgcatcacctctaccacctcccttggaagcaacggcgtgctggagttctcaaacaacacttcaccacgtgaggtagggacaatcatcattcaagataatcagtctgtgcatcagcacagcatctggagcagctttcaagaaggccaggacccaagaaccctctccggctcaagctacagttaa
More
|
|||||||
| Protein seq | MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPASLFLPSSTTTSTTPSSSSSPLHSFSSLLLSNHYPLPSTATTSTAAAPWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNKNWEGQVLFPTTPAAAAAEADHGSNSYNNIYSTTTTSHGSSTSDDASQLAVAARPSSSPWGGIHGHHPHHNALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPREVGTIIIQDNQSVHQHSIWSSFQEGQDPRTLSGSSYS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.986966 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0276900 | SBH | 0.887383 | 0.597445 | 1.016552 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g17680 | SBH | 0.498005 | 0.367497 | 0.217163 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0276900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012210 | RBH | 0.0 | 4.832655 | 4.377953 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012220 | RBH | 0.386512 | 17.415758 | 2.133834 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012050 | SBH | 0.037573 | 0.237198 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011970 | SBH | 0.000000 | 10.404568 | 7.044931 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0158300 | SBH | 2.9375785 | 15.2340285 | 6.0000535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011810 | RBH | 0.000000 | 0.848929 | 0.855140 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0170800 | SBH | 3.106822 | 9.8369245 | 8.7959915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012370 | SBH | 0.0 | 0.120324 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011970 | SBH | 0.0 | 13.781455 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012370 | SBH | 0.000000 | 31.038538 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012230 | SBH | 0.462674 | 1.841025 | 0.789931 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012010 | RBH | 0.114805 | 17.217443 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012390 | SBH | 0.0 | 2.876642 | 0.817494 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012180 | RBH | 0.000000 | 7.172366 | 2.619273 |
