Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0012370 | OGI:02028480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:10508245-10516318 | ||||||||
| Gene Symbol | OsbHLH072, - | ||||||||||
| DNA seq | agatgaaaccatttagactttattacagcaagcaataaattaaaacgtagatacacatgcatgcattacacattcatgaccattattttcgtgaacaagcaaggtgacatgcatgcattcaccaagataaaagacttaaattacaagggtgttactgatgtttgatgatcaacaccaagctatagcaagcataggtgcgctctggcagctgtctacaacttaacccttcttcattcttccagtgcataataatccattaatccacccaaagagatcaatctctagctagacaagagccacacacacacacacacacactaccagttatatactctgttgctgcacccatcaaaccatgagcatacacgtgcatagcatcaagaggaaccagccttttcagcaggatggctgctcctgatgttatgcagctaattaacccaaatgcaagcatgcatgcatgtgatgtaatatgtaagatatgatctctatatttccattgattcttcagctagcttaattagccagccgagccagccatttcattggccatggcgcccacagagatcaccggaccatgcgtcgatctagcggccgaaccctatgccgaaagccggcggcgccgcccagtagtccgccgggccggcgtcgacgccgacgtccaccgtgcagctcaccggaaccaggcacaggcccctgctcctcagatccatcgtcttcgcttcctcacagctttcatcctgattaattaattaattaatcgagttaattattgtcacacaaaattatcgtaggcaccatttagtattttacaattattttgctaaattatgtatacttgtaatttacatgaaatttaaatcgatgagagtacatgtatcgttctaagggatgaggactcacttgatcaggctgtcctctctttttcacggcattgtcatgtaggagctgctcgtacaatggaaccacacataaagagggtgttgtattagttattaagtgattaatcaaagctaagtttgcagtgatagttattaaaggtgtaaagctagagacaaagtactggccccatgattaactttccaggatgcttttatggaccaattaaagcaaagctttagacaaactaaaagcccctttgggaacaaaaggatcatcttttgtgctttacttaactgatcagctgggtatagatcccataaaggaaaaatgactaattgatcgaataattcattagttacttaatacctggccagggtcttctggaaatatgctgttcctttctccttgcacctataaaattaaacagcaattaaagggaatcaaacagctagcttttttatcgaccagcatatatatactcatttggttcgtcaggcataaagtttctgtcaatacttttatcgaaagatctcacagagatacgatgctctgaataaaatcataagcacaagctttttattcttgattattgtgtgcaaagtttgttctgccattacgtaacctaatctaaactaatctagctaacccatgcatatggtagttttgttgttctttttgcagtgtgcagagatcagtgcatgtgtcaatccatggatcggaagaatagtctattgagaccagtacaataaaattgcaatgattagattaattaattatagcaagtgtactccctgttctgcagtgtgcagactcaatgcatgtgtcaatgtggatcagaataatattatattgagcagtacatgaagaagtaacgtaaccctacaattaacaaaatgtactgacgcaacacctgtgcaggcaacatagtttggaataaaaccataattttagataaaatatttcaagtgtatgtgctacatgaaaatagttgtgaggttgaagttgtgggcacattttataaacttatactagctaaaatttgtgaggttgaagtttggtctaaaatttgtgtatgaccgtctaatgtagccttttcctaaaagagaattcttgttggaaaaaaaataaaaggttttatgcgtggtgtgtggttatttaattacaaaacaacctactatatgtacgaatatgttttttctatcagtatatatttttcccaacaacttagcctagctgccaaaaacatacaacaaatatgtgcgcaccactgtactatagttgacatatgaacagatagatgcatgctaaatagtaattgacaacgtacttggaacacaatcacttgacattaccctttgtatttattgtggacaagctctgtgaggggatttcaatattatttgtgtgtactacgggtcatgcttcctaaataaagttaactagaataaattgcagtagtactgatagaattatattttgtgcacataaaaaaggtagagatactttattaatcgtgaggtggttgcaggaaaccaacaatttttcatcggtttcaaccgaccaaatcattgtcgtgtttctgtcatgacaaagccttatgtcacctactgttgtacatagctagaggactaaatgtttttgttaatcctctacaaagtggctagtgttaataaccaatatatatagagagtgtttttttttcgaatataaagtgaattgtctgctttttctaatcagttgtggcttttagtttgaattgattggtgcacaacttaatatgcaatcagatccaaagatctcgagatcaaatcctagttagcgctctatttcatgcttaagggcttgaggaggcctcgcgtaagggtgcatgcaactcaatattccactatagtagtctccaatgacattttatgtgttttaccccccccccccccctccatcattatgcattccctactccccatgcgttgtatgtgtgccggcttaatttgaatgtgtctatttttcacacgataattatttaaaaaccattgaaatgatatgatttaaaaacaacaagaaacaaacgatagactgcaccatatggtaaaataatgtgtttgggcttaatttgaagcgtgatcgatctgagttcgatcgacgaccccccaacgtaccaacaaccatatatatcgatatatatgagccagaaaataatgctacaacaactaagtaaggacgaaaacggttttcctatatatatggaccgcggttacgtttggaccacgccaacaaagtaacaacaacgaccaacgaccattcgttccgatgatctacttactcctatctatcagccgccacccaataatgaagctgcctgcatctgcatctgcatgccttgcccacggtaaaaaagaccaggctgctgctattgcagatttgcagcagatgcaacgacgacccaatgcaaattaagcctggatattttctgccaatacttacgctccctttcacccttgttgacccagctagctgccaattcaaagccattccaaacgcaaaaggatacagatgcgatgcgatgtgatgcgatgcgaaccgcggatggaaggcgtgcagatggatatgacacgcacggtgatgatgagaaaaaaaaaaaaaccctgctgctgctgcagccaacgtcgggaattgtgcacatcgatctctcgcgcgtgggggggcgttcgcagtgcaggcatgcatgcacagtggctataagctacagtagatattgtatagctatatactcaccctgctggcttctggctgatgctggagcttgctgttggagccacctccaccattgctgctgctgccgccattgccaaggtacggcgagctcagagcctggagatccatgaccatgagatgggtcgtcggagattatttatattaactagagtgagaaatttcgttaattaggtttaatgtaagtgtgtagttatatggtagtagtattaggtggtactcccctccgttctaaaaaaaacttgacctcgtattatgatgtgacgcattctactaatacaataaatctagacataaagattttagtactaggttgattttttttaagacgggggagtatcgtactgaagctaattaagaggggcaaaaaaagaaaaaaaagaaaagaaaaggtgtgtgatggcttgtggcagcacaggggaggacaacgtgtggctgcttttgcgaaaaggcaaagcaagcgagagcaagcactgtttacatgagatgagcagcaggcaggctaaaaagattgcatcctggctctctctctctctctctctctgaccatctgcatgcatgcatatgctgctgcatcgatcagatcgacaagccagtataaacataaacacacatgcacggatcgaccgggattatataggtctagctatggcaacgcatgcacatatactacggtggtgtttagatacagggacttaactttagtccctgtctttagacactaatttagaatattaaatatagactacttacaaaactaattacataaataaaagctaattcacgagacaaattttttaagcctaattaatctataattagagaatgtttactgtagcatcacataggctaatcatagattaattaggctcattagattcgtctcgcaaattagtccaagattatggatgggttttattaatagtctacgtttaatatttataattaattttcaaacattcgatatgatagggacttaaaagttttagtcccatctaaacagggccgtagtactctgaagatactaaagctgcagctttagtatctgtaatatgcaagagagagcatgcattggtgcatagtagagccctgcctctttttgtttcaacctgtctagctccttccttggcacatcaaatcactgtataatattatttactctatcaatctagtatatatgcatcatttcatggagctaagctaagctaagctaatctctgcatgcttgtaaccctagctatgaaatgtttcaattaagatgttattatgtcaaagtatgtatacttgcaattaatggagctgtctccagaaagtatgtatatatgttgtgtcaaaagtgaacaacgacctgccgcatgtacgaatgacaataaccaagaaacaaacactttatgattcatggatactacttcctccgtttcacaatgtaagttattttagcatttttcatattcataataatgttaatgaatctatatagatatatatatatatatatatatatatatatgtctagattcattaatatcaatataaatgtggaaaatggtagaatgacttacattgtgaaaaagagggagtagcattatttgagagagctagctgctctgcaggtatgggcacgcatgcatggaggagagagatgatggagagaaatgagagggagagagaaagagctggacctcaatttgaccgtgtaggaatctgatgtacccaatggcttcaaggagtacagacgcagtgtcagtctggcataaaagagaggttagcccatgtcaggatctcttttttgtatttttctctggaatattggatcttcttttactactacatgactggtcatcacccatcaggggttaaaaacaaagatacaaaagtactactatcaccacaagatactcctattctatagagagtttcattcattcccctatatatattgatatatataacttccttcttcggtaaagtagctaaagataactaattaggagtatatatgatcatcaacgcatcagataattctcagtagagttttccctcaaatttcattaacttctattttgtcttttccttttgtttcactgAaatatatatttgtaattttatgaacaaaataaatgagacttaattatatatgtaggaacagatcttactacttagaaataagaataatttacattaatctaaatttatatatacattgatgtattggactatagtaataattaagccggtgtgccatactcatgggcacatacgtactctttccgttttcatatccattaggtacaaggtctaatcattttctggataattacagctcatctcagaagaggctaaatgaggaactacttgacattgtatatatgtggtcatagcaccttataatattgtcttatccattgtctttccaactggtttttcttgtatatattccttacagaaataaccatctgttcgttgaacacttagcatttgtataattaagaaactttaccagatcaacgaactcagttgttatattctactagcctagtgacaattattctcttcccattgctgaaatctaaaagctaaagactaataacatgcatgtagtgatatatatgtaccttcccaaatggggagacaagctggtgaagggcagttattctatcacctagcttctccttcctcacctgaagaaaaagcacaagcaaaacatactaattaagaacgccatcatttccatctccaaccccatctcaccttatctcttaacctacaatgattccatgcctgtccgtttcagcaagcaaactattgcttcagtgctagcttagattgctctgattgattgggccatgctcattgagagatctagagagagagagagagagagagagtaccttaactgtagcttgagccggagagggttcttgggtcctggccttcttgaaagctgctccagatgctgtgctgatgcactaggagaaacacaaaaggatgtagagcaaagttacaaaactttcatacataactaattaattatcaacatggctccctatcttaactgcttccaggaggagtgaaactttcatgcatggttatctacccacacaaagctattagtattgaatctctctttctaaccatccaaaaggtgatgatgagcttcctcaaagaaagactttttcacccaccctcactcctcagtaaatgataagcacctaaaataatctacacacaaacaaaaattaccagactgattatcttgaatgatgattgtccctacctcacgtggtgaagtgttgtttgagaactccagcacgccgttgcttccaagggaggtggtagaggtgatgcaagaagacctaggggaggaagcttgctgctgcaaggcgttgtggtgggggtgatggccatggatgccaccccatggagaagacgacggccttgcagccactgccaattgggaagcatcatcactcgtgctgctcccatggctagtcgtggtggtgctgtagatgttgttgtagctgttgctcccatgatcagcttctgcagcagctgcagctggtgtagttgggaacagcacctggccttcccagttcttgttgtacccctcttcaccactagccaatccaccactggatgatcacaatatatatgaccatgtaaagagggagagatgaggtttttagcacaatattatttcatgtagctgttcagaagaattctagaaacagaccatttccaagaacaatatcaagttaatcaattacaaacatataaataaaaaaagagagaatgtgtgtgtgtgaattacagtaagatatggttccatgagtcctggagatgttggccgtggcggctgccggtgtcgtgccaaggcgcggcggcggtgcttgtcgtcgcagtagaaggaagaggatagtgattcgagagcagcagggaggagaaggaatggaggggagaggaggaggaggaggagggagtagtggaggtggtggtggaggatggcaagaaaagagaagccggattgtgaagctgctcaacaaaggggggcctcaaattattcacactccaccatccatggccttcccccatctcccccactagagctgatgatttgtggaggactcccctatccatattccctctcccttgatatgctgatatgatcttccacccaagcaagctagctatactagcaaccaagcaacaaggtagcactcacttgatctctctttctctcactcactctctctctctagcttttgctcactctctccacaggctctctctctcagctagctagtgatctccttttacaccttgaggtcaacctttagagagagagaggggggagaggagaaagcatatgagcctttggagggaaggggatctctcatgggcataagaacttattagtggaggagtg
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| CDS seq | atggataggggagtcctccacaaatcatcagctctagtgggggagatgggggaaggccatggatggtggagtgtgaataatttgaggcccccctttgttgagcagcttcacaatccggcttctcttttcttgccatcctccaccaccacctccactactccctcctcctcctcctcctctcccctccattccttctcctccctgctgctctcgaatcactatcctcttccttctactgcgacgacaagcaccgccgccgcgccttggcacgacaccggcagccgccacggccaacatctccaggactcatggaaccatatcttacttggtggattggctagtggtgaagaggggtacaacaagaactgggaaggccaggtgctgttcccaactacaccagctgcagctgctgcagaagctgatcatgggagcaacagctacaacaacatctacagcaccaccacgactagccatgggagcagcacgagtgatgatgcttcccaattggcagtggctgcaaggccgtcgtcttctccatggggtggcatccatggccatcacccccaccacaacgccttgcagcagcaagcttcctcccctaggtcttcttgcatcacctctaccacctcccttggaagcaacggcgtgctggagttctcaaacaacacttcaccacgtgagcatctggagcagctttcaagaaggccaggacccaagaaccctctccggctcaagctacagttaagactgacactgcgtctgtactccttgaagccattgggtacatcagattcctacacggctctgagctcgccgtaccttggcaatggcggcagcagcagcaatggtggaggtggctccaacagcaagctccagcatcagccagaagccagcagggtgcaaggagaaaggaacagcatatttccagaagaccctggccagctcctacatgacaatgccgtgaaaaagagaggacagcctgatcaagatgaaagctgtgaggaagcgaagacgatggatctgaggagcaggggcctgtgcctggttccggtgagctgcacggtggacgtcggcgtcgacgccggcccggcggactactgggcggcgccgccggctttcggcatagggttcggccgctag
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| Protein seq | MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPASLFLPSSTTTSTTPSSSSSSPLHSFSSLLLSNHYPLPSTATTSTAAAPWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNKNWEGQVLFPTTPAAAAAEADHGSNSYNNIYSTTTTSHGSSTSDDASQLAVAARPSSSPWGGIHGHHPHHNALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPREHLEQLSRRPGPKNPLRLKLQLRLTLRLYSLKPLGTSDSYTALSSPYLGNGGSSSNGGGGSNSKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR |
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| Function | Transcription factor bHLH68 [UniProtKB/Swiss-Prot:Q8S3D1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0012370 | OsLima_02g0012370.01 | Chr02 | 10508245 | 10516318 | - | NAM | ||
| CDS seq | atggataggggagtcctccacaaatcatcagctctagtgggggagatgggggaaggccatggatggtggagtgtgaataatttgaggcccccctttgttgagcagcttcacaatccggcttctcttttcttgccatcctccaccaccacctccactactccctcctcctcctcctcctctcccctccattccttctcctccctgctgctctcgaatcactatcctcttccttctactgcgacgacaagcaccgccgccgcgccttggcacgacaccggcagccgccacggccaacatctccaggactcatggaaccatatcttacttggtggattggctagtggtgaagaggggtacaacaagaactgggaaggccaggtgctgttcccaactacaccagctgcagctgctgcagaagctgatcatgggagcaacagctacaacaacatctacagcaccaccacgactagccatgggagcagcacgagtgatgatgcttcccaattggcagtggctgcaaggccgtcgtcttctccatggggtggcatccatggccatcacccccaccacaacgccttgcagcagcaagcttcctcccctaggtcttcttgcatcacctctaccacctcccttggaagcaacggcgtgctggagttctcaaacaacacttcaccacgtgagcatctggagcagctttcaagaaggccaggacccaagaaccctctccggctcaagctacagttaagactgacactgcgtctgtactccttgaagccattgggtacatcagattcctacacggctctgagctcgccgtaccttggcaatggcggcagcagcagcaatggtggaggtggctccaacagcaagctccagcatcagccagaagccagcagggtgcaaggagaaaggaacagcatatttccagaagaccctggccagctcctacatgacaatgccgtgaaaaagagaggacagcctgatcaagatgaaagctgtgaggaagcgaagacgatggatctgaggagcaggggcctgtgcctggttccggtgagctgcacggtggacgtcggcgtcgacgccggcccggcggactactgggcggcgccgccggctttcggcatagggttcggccgctag
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| Protein seq | MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPASLFLPSSTTTSTTPSSSSSSPLHSFSSLLLSNHYPLPSTATTSTAAAPWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNKNWEGQVLFPTTPAAAAAEADHGSNSYNNIYSTTTTSHGSSTSDDASQLAVAARPSSSPWGGIHGHHPHHNALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPREHLEQLSRRPGPKNPLRLKLQLRLTLRLYSLKPLGTSDSYTALSSPYLGNGGSSSNGGGGSNSKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.120324 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0276900 | RBH | 0.887383 | 0.597445 | 1.016552 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g17680 | RBH | 0.498005 | 0.367497 | 0.217163 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0276900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012200 | RBH | 0.000000 | 10.799544 | 2.017975 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012360 | RBH | 0.108704 | 1.143114 | 2.848006 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012210 | RBH | 0.0 | 0.000000 | 4.634780 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012050 | RBH | 0.037573 | 0.237198 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011970 | RBH | 0.000000 | 10.404568 | 7.044931 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0158300 | RBH | 2.9375785 | 15.2340285 | 6.0000535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011810 | RBH | 0.000000 | 0.848929 | 0.855140 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0170800 | RBH | 3.106822 | 9.8369245 | 8.7959915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011970 | RBH | 0.0 | 13.781455 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012370 | RBH | 0.000000 | 31.038538 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012230 | RBH | 0.462674 | 1.841025 | 0.789931 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012010 | RBH | 0.114805 | 17.217443 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012390 | RBH | 0.0 | 2.876642 | 0.817494 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012170 | RBH | 0.310200 | 65.074936 | 0.000000 |
