Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0006910 | OGI:02014990 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:4960228-4966995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaactacctcagccccgacctcaagcgcggcaacttcaccgacgacgacgacgagctcaccatcaggctccacgcccttctcgggaacaagtaagcaaaacaaatttcaacatgttgccatctgcttcggttagctcttcttgtgttcttggtgctgattgattggttttgcaggtggaacacgcgcatcaagctcaagctcttgagccagggcatcgatccgcagaagcatcagccagttagtgcccggaccagcgttgctgcggcaagcgagctaaccacgacggccagcactgtcagctttccgcccctagcaccggcgccggtgcgagggagctcaaggaggaaggagggaaggctgggaggggtcttcctcgtagtcgtcgctggcggcagaagggtcgccgcgtgctcgcccattgccgctctgccaccgcgctcgccctccgcttctctgCccgctgtcgcgctcgcgctccactgctcggcccgccgccgctccgctgccgcgctcgccctccgttgcgccacccgcatcctggctcgcactccgccgctccacccgccgccgcgctcgcccatcgccgctccgtcgccacgctcgccctccgcttctttgcccgccgctgcgctcgcactccactgctcggcccgcctcgctcgcgcccgcggccgctccgctgccgcgctcgtcctccgctgcaccacttgcatccgcgcgcgcttctccgcctaccgccggcctccctcactaaagtttagaaagagagaagagagaaaagaggagaaggagaagaaaaagagaaacaatgtgctgctgacatgtgggccccacgtactttttaatttttttttctgactagaatgccacgtcagcaaaaccacccatatatattgcctagggaccttgagtgaacggttttgtatattttagggatgaagatttctggttttgtgattaagggaccacaaaaaatctcgctgttaagttaagggacctccgatgaacttattccttagaaacttgtgccaactgctgaacggtccaatactaggtctcaccgggagcgtgaagcccgaaacggcacgcggaagcgcgaagcggcggccgccgccgccggtcgagcgggacggcggcggcgctgcgcggcgcgcccaaccccccatctcctagatcgtgtcgtgcgccactcctcccctcctggctccgccgccgcggcgcccggtgaactcgtcgtgtgtctgggacctcacctctagggatccgacgagcgacgatggctactcctcccctccgccgcggcgcccccAccaGGTgataaactcgaaactacaccgtactggcctgaatcatctcgttacggaattccactaatttgttttgctgcaagatgttggttgttgttgtatgAaattctcgccattagtctatggtggatcggagaagtggcattatttagcagtagtaacttagaaatccgctttagttcatacgagtatttcatactccttagttgcgagtgttgatatgagaaaaaaaaagtgttggggtattggctattcctgaaaaaaaaaaccgtgtccctacttgttgaaccacacatcaaaagttacagaaggaagttttctgcattgttcatggctcattaggttcttagaaaaaagaagtgctaactggaagcagttgcataaataaattaataaacacatatctgaaagccaagaattttgaattacaagccgatactaggtaaaattgattattcctgccctaatgtttttgctttgtgattctattactcctcgactataaggaggagcatcattctgaatttctaccgaaccttacatcttcttaaagtccatatgggctataattctgtcaatatATAataccgttatgaacatcatttctgccactgatcatgtcatcatggtgttacatttgtactagtctgcgtgtgctgtgttcaatagctatggaggtttccaatatatatagcacaaaagaAGaaagaaatgcaacctaatatcatcattacaatataatatcatcattacagtatagtcccaacagataatgcaagaaaagaaactacaagcttcatacatttctatatactgatagagcaatgtgaggaaaaacaacccattgtcatagaaaacaactcatttgaaccgtgtgttgtttggaaatgggtgctgtcttgccatgcaaaacctcagagctggacctgctggttgcctgcttgttgcaaactaaccaagctacaatatgttccagagaagcccttcgccatgagggatgtgtgtgtgcccttctctacaattgttcctttttcaagcatagtgataaggtcacacttttgtataatgctaagcctatgtgccaccaccacacttgttctgccaaccatcactctgtccagtgcctcttgtaccaccttctcggattggctgtccagtgcacttgtagcttcatccagtagcaagatagctgggttcttcaggatggcacgggcaattgcaatgcgttgtttctgccctcctgacagctgaactcctctctcaccacacaacgtgtcatatccatcctttaggttgctgatgaagtcatgtgcattagcagaccttgctgcatcctcaatttccacctcgctagctatgtctatgccatacacaatattctctctgattgtaccagcgaatagtgttggctcttggctgaccagtccaatatgccgccgtagatatctaagattatatgctttgatatcccttccatcaatcttcaccgaCcccctaattgggtcgtagaacctctctatgagcccgatgatagttgatttgccggagccacTtttcccaactatggcagttgacttgcctggttggatgctcaatgtgaatcctttgaaaattattacatctggccttgatgggtatgaaaaatcgactcctctgatgtccacctcgcctttgagcttctctggcttgtatccatgagggttgttaggatcgatttCtgtttcccgatcaagaatagaaaatactgaagcgactgcatctgcacccttggctaggtctgttgtcatgcttcctgcctcttcagttacacgacatgtatttattagaatataaaaggtttggaagagctccgtgttagtaatttggtggtcagccacaagcctgccacaataccaaagttcaagggcccatgtgcatatcatgaggctcatgggggtaccaaggccgagccctgcaaaccatgattgacggatgctttccttgcgtgctccatcttgtgcttggttaaagaggcgtaagatgcgctcttgggatgagAaaAGCGGTAACCGTTTGGAGATTGGAGACTGCCTCAGCAGCTAGCTTGCTACTTTTAGCTTGTGCATATTTTGATTTCTCGGACATGCTCTTAAATAAGACACGACGAACATAAAAGCAAACAATGATGGGAGGCTGCATCACTATCATGAAAAGGGCCAAACGCCAGGCAATGATCAGTCCCATGGTGTATCCAATAAGTATTGTTGAAATTGTTTCGATCATAAGAGCCATTTGGTCACCCACGAGAGACCTCACCTACAATAATAGGATAGCAGGTCACTTACTATtatgttttaatcatatacatacatatttttatatatgcacttactatgttggcgtccttagctagctgtgagcataaggcgccactggagttcttgtcatggtcaaaccacccaatttcgaaggtgaggatctttgcaagcatctgttctttgattctcttggtgaggtattcccccattgcaccaaagttataatgctgcccaatatttagaaaaaatgacagcactgcaagacctaggaagatgagtgcgttggtccttgttttgtccttgatttctgcatgatctgtcaagaagtaggctgagatcatgcttcccaaggtgtatgaatacgtaggttggatgcctccaaacaaaattgcactaaaaccccccattagtgattgcttccattctggtgcattaagcataaatagccttctgaaggatggcactggaagcttttgcttcttagtgttgtcagcatctcttgcatcacccaatgaccttgcggagtttgacctgctaactgtagagaacctcctggtcatgatgtggatattggactgctctacagcagatgtactacctgttacacAaatttgatcaatctcatttgaatctctggtctgttgaaggtgcacaagagatgaatagaggccattctcattagcaatgagctcatcatggggtcccagctccataacctcaccggactgcatgacaacaattatgtcagcattgcggatagtggatagacgatgtgcaattatgatagtagtccggcccatagatgccatgtctagggcctcctgtacaatgcgctctgactcagtgtccaatgcactagtggcttcatcaaggagtaggatcttgggtgacttcaggattgctctggcaatagcaattctctgcttctgccctccagacatttggacaccgcgctctcccacctgttgttttatttcaaactaggttatcactagggttggaatgcttataagctaaacattcttgaaattcttaacgatatgtgcaagatattgacatgaacactaaattgatgggttgtatagacaatatgaaagcgtcattatggtaagtatattattatcttgtttcagctcatttgattgttagaagtgagcattctaccctttattgctaaccacaaacaaacataatcatggacaattgattagatcgcacttcttaaactgtgagataatgttggcttgccatgtctccttgttgtttcataaagatctctaaaatctttgtgcaacattaaatacttccctagattattgagttacaaggcagcagattgctattatcctcctacagatataatccagaattccagatcatactcttacttgtaataataccctgttcctttacccacgtcaaaaccctgctttacaactgattgaaaacacttgagaatcagtagtaaacaaatactagtaaccactctttaggggggatgtgcacatcaggttatcttgattcctacgtgtcacaccttcaaaaatcaaacgcggtaacttttggctaataattacactaataatatctatgttagtattatatattatgtatgttatatagttagattcgtattttaaaatactttcaagtgatactaatattatagttgttgatgacataatatgaaataaattaataattaaagtatatcatcaaaacttgtgtagaaaaaaatatgccttataatttgggacagtgggaatagttcattaacacgttatttttttttctgcagcagattacatgcatgtgcaaattgctggaatgttcggtgtataactaattaatgatcaattaaacacgataaaatagtggaggtggctatattttggatgacaatattaatgagagccggtttatattttcggggttagtactatttttatccatgcatcatcttcaccccttgcctctacttttctggaatactatagtctcctatctttaattatttgatggtattgtttatagtaccgtagattaactaaggcctttttaatgctttgatttgaaattgggcagttgtacgtagcagcaatattgatagaggcatgtacaatataatgtggccattccgttctgttgttgtacttgggacaattacgttaattcttgcctaaatataattgcgattctctataattttttagacgtgtaataattttaagcgaatttttttctgaattgcaaattaacttttgtgcacttgctctgtcctaaaatatatttatttttcatttatcacaaaattaaaaaaactataatatccttactttatcaaatctcaatacaactattttctattttatctactctcagtacaatttttccctattccacaaacttcgatctaaggattactttataaataaacttattttaaaacaaatgtaaaagatgagcttatatgctctaagagcggccacgagcccacgacgtgagatagtcttccctctctgctagctgtacgagacgcaggccggtggctgtacctgcctccggcaccaccatcgagctgaagttcttcaccacctgctcgtattggcaaaactatgtcttaggtggagtggtaattagctggtttggatgaatatataatgtggaaaatatccatgaatcatagattaggccagacccatgcatattcaccccaatcatatgcaatatatgcaggtcctgaccctatcttactttacttatgttcagtgcagatcctaacgtcgaagtggtaagccgaaacgataaggtggacaagatccgctcctttccatcctctcgtgcatgaccatgtggtcggtggctccccgtccgtccctagattacccttatgctcacggctatgctttaattggaagatatacaaaatagttaaccctctccggctcttccatatagttttaaacaaactaattaaaaacaaatttagaaaagaaaaaaagaagtctacttagacatattcgtgtatataaattttatacatagtgtatacgcctttactttatacactttttttacaaattttatgcatattcgtgtaatgtaaacttatattaacccagttaataaaaataaacatatgaaatttttttattggtata
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| CDS seq | atgaactacctcagccccgacctcaagcgcggcaacttcaccgacgacgacgacgagctcaccatcaggctccacgcccttctcgggaacaagtggaacacgcgcatcaagctcaagctcttgagccagggcatcgatccgcagaagcatcagccagttagtgcccggaccagcgttgctgcggcaagcgagctaaccacgacggccagcactgtcagctttccgcccctagcaccggcgccgcgcgaagcggcggccgccgccgccggtcgagcgggacggcggcggcgctgcgcggcgcgcccaaccccccatctcctagatcgtgtcgtgcgccactcctcccctcctggctccgccgccgcggcgcccggtgaactcgtcgtgtgtctgggacctcacctctag
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| Protein seq | MNYLSPDLKRGNFTDDDDELTIRLHALLGNKWNTRIKLKLLSQGIDPQKHQPVSARTSVAAASELTTTASTVSFPPLAPAPREAAAAAAGRAGRRRRCAARPTPHLLDRVVRHSSPPGSAAAAPGELVVCLGPHL |
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| Function | Transcription repressor MYB6 [UniProtKB/Swiss-Prot:Q38851] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0006910 | OsKeNa_02g0006910.01 | Chr02 | 4960228 | 4961489 | + | NAM | ||
| CDS seq | atgaactacctcagccccgacctcaagcgcggcaacttcaccgacgacgacgacgagctcaccatcaggctccacgcccttctcgggaacaagtggaacacgcgcatcaagctcaagctcttgagccagggcatcgatccgcagaagcatcagccagttagtgcccggaccagcgttgctgcggcaagcgagctaaccacgacggccagcactgtcagctttccgcccctagcaccggcgccgcgcgaagcggcggccgccgccgccggtcgagcgggacggcggcggcgctgcgcggcgcgcccaaccccccatctcctagatcgtgtcgtgcgccactcctcccctcctggctccgccgccgcggcgcccggtgaactcgtcgtgtgtctgggacctcacctctag
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| Protein seq | MNYLSPDLKRGNFTDDDDELTIRLHALLGNKWNTRIKLKLLSQGIDPQKHQPVSARTSVAAASELTTTASTVSFPPLAPAPREAAAAAAGRAGRRRRCAARPTPHLLDRVVRHSSPPGSAAAAPGELVVCLGPHL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0006910 | OsKeNa_02g0006910.02 | Chr02 | 4961268 | 4966995 | + | IsoSeq | ||
| CDS seq | aacggtccaatactaggtctcaccgggagcgtgaagcccgaaacggcacgcggaagcgcgaagcggcggccgccgccgccggtcgagcgggacggcggcggcgctgcgcggcgcgcccaaccccccatc |
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| Protein seq | NGPILGLTGSVKPETARGSAKRRPPPPVERDGGGAARRAQPPI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.720726 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0189566 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09670 | RBH | 0.404502 | 0.445714 | 0.416415 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0189566 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006760 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001240 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006690 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006630 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006680 | RBH | 1.377414 | 0.000000 | 4.231245 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0084100 | RBH | 0 | 0.0746785 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006640 | RBH | 0.214545 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0087000 | RBH | 1.056736 | 2.3448795 | 3.0971225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007070 | RBH | 0.429440 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006790 | RBH | 0.000000 | 2.285599 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006760 | RBH | 0.000000 | 0.000000 | 4.158488 |
