Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0048390 | OGI:01126210 | 2/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:43219112-43219294 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaggagctcaggaagctgctgtctgggggtgaccatcgcccatggcggagtgctgcccaacatcaacctggtgctcctccaaaagagggccgcggagaaggccaacaaggaggccaagtcgccgaagaagaagcccgccaccgccaagtcccccaagaaggccgccgccgccgccgagtag |
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| CDS seq | atgaggagctcaggaagctgctgtctgggggtgaccatcgcccatggcggagtgctgcccaacatcaacctggtgctcctccaaaagagggccgcggagaaggccaacaaggaggccaagtcgccgaagaagaagcccgccaccgccaagtcccccaagaaggccgccgccgccgccgagtag |
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| Protein seq | MRSSGSCCLGVTIAHGGVLPNINLVLLQKRAAEKANKEAKSPKKKPATAKSPKKAAAAAE |
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| Function | Protein H2A.6 [UniProtKB/Swiss-Prot:Q43214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0048390 | OsKeNa_01g0048390.01 | Chr01 | 43219112 | 43219294 | + | NAM | ||
| CDS seq | atgaggagctcaggaagctgctgtctgggggtgaccatcgcccatggcggagtgctgcccaacatcaacctggtgctcctccaaaagagggccgcggagaaggccaacaaggaggccaagtcgccgaagaagaagcccgccaccgccaagtcccccaagaaggccgccgccgccgccgagtag |
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| Protein seq | MRSSGSCCLGVTIAHGGVLPNINLVLLQKRAAEKANKEAKSPKKKPATAKSPKKAAAAAE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.720303 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0502700 | SBH | 0.0 | 0.0 | 5.677299 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0018640 | SBH | 0.237276 | 22.920723 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0018550 | SBH | 0.0 | 13.737780 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048310 | RBH | 0.0 | 0.385522 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0001000 | SBH | 0.0 | 1.647084 | 0.214985 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0709000 | SBH | 1.9812585 | 0.7676535 | 19.3437105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
