Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0048310 | OGI:01126210 | 2/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:43448709-43449166 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaatcgtctcgtttctcccgaccagttggattccttctgcctcatccctcattgtcgtccacgccgccatctccttggtcatccgcaacaatgaggagctcaggaagctgctgtctgggggtgaccatcgcccatggcggagtgctgcccaacatcaacctggtgctcctccaaaagagggccgcggagaaggccaacaaggaggccaagtcgccgaagaagaagcccgccaccgccaagtcccccaagaaggccgccgccgccgccgagtagagtagagtagctgccttccttccgtggtctagccatgaatggctagatctggatcgggtttcttcttcttctgctcaatgtaatgctgccgttagatctgatagtggtggggtggtattggtactagctttgtactccttgcattccttggctaatggaagttccttccttacttttgctcc
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| CDS seq | atggaatcgtctcgtttctcccgaccagttggattccttctgcctcatccctcattgtcgtccacgccgccatctccttggtcatccgcaacaatgaggagctcaggaagctgctgtctgggggtgaccatcgcccatggcggagtgctgcccaacatcaacctggtgctcctccaaaagagggccgcggagaaggccaacaaggaggccaagtcgccgaagaagaagcccgccaccgccaagtcccccaagaaggccgccgccgccgccgagtag |
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| Protein seq | MESSRFSRPVGFLLPHPSLSSTPPSPWSSATMRSSGSCCLGVTIAHGGVLPNINLVLLQKRAAEKANKEAKSPKKKPATAKSPKKAAAAAE |
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| Function | Protein H2A.6 [UniProtKB/Swiss-Prot:Q43214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0048310 | OsARC_01g0048310.01 | Chr01 | 43448709 | 43449166 | + | NAM | ||
| CDS seq | atggaatcgtctcgtttctcccgaccagttggattccttctgcctcatccctcattgtcgtccacgccgccatctccttggtcatccgcaacaatgaggagctcaggaagctgctgtctgggggtgaccatcgcccatggcggagtgctgcccaacatcaacctggtgctcctccaaaagagggccgcggagaaggccaacaaggaggccaagtcgccgaagaagaagcccgccaccgccaagtcccccaagaaggccgccgccgccgccgagtag
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| Protein seq | MESSRFSRPVGFLLPHPSLSSTPPSPWSSATMRSSGSCCLGVTIAHGGVLPNINLVLLQKRAAEKANKEAKSPKKKPATAKSPKKAAAAAE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.385522 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0502700 | SBH | 0.0 | 0.0 | 5.677299 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0113900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0018640 | SBH | 0.237276 | 22.920723 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048390 | RBH | 0.0 | 0.0 | 1.720303 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0018550 | SBH | 0.0 | 13.737780 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000980 | RBH | 0.0 | 1.473124 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0709000 | SBH | 1.9812585 | 0.7676535 | 19.3437105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0001030 | SBH | 0.0 | 0.842984 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000950 | SBH | 0.0 | 11.250377 | 5.285928 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0001050 | SBH | 0.0 | 19.511801 | 0.979919 |
