Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0035720 | OGI:01100180 | 5/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:33600960-33606345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggtactttgacctagtaatctggtgggcggcagcatgcaagtcctcttaccaaaggtcgatgatatgtgtttgatgcggtggtcatcctaatcatatggatgatttggaaagaatagaacacctagttttttgacgggtgttgtgttcgcccaataaggtggtttggagtatcactgaggaatggtgaacataatgcatcggagggcttgaaggtgcattgcatggtgctgtacccggatgaagagctcggtggctgctctgctttgagcagaccagctatgcagctgtgttttgctctattctgtgtagactgtagagtgtagtgtagtacaccctttatcttagaaaaaaaactaactaatggagatgaatctaaacagttgcttctccatatttatccctagaaattatttttctagacgaaggaagaacatagcactttgcaccatagtggatggctgtggccgtgcttttccattcatgtaaaattgtaaaatgtaacattctatcccaatcataatattttggttgacgtcctttcgttatcaaatatgtaactaaaagaatctaaatattcctataaatacaatgatatttattgggaatagttttttatttttgaaatatcgtatttccatacctttggaattggacacttggaaagattggaaaaatgtttaagaaaaaaggaaaaaggctgtaattggccaaaaggcatcattttggccaaacaagcctatgttagagcatctccaatagtctctctaaattggactctccaaatacccatatagccaactctccatctgatttggccacttaaactagttactcgctccaacagcctctccatctacccactctgttttaagtctatgacactggttccccacatgtcagtcgttgcttttcttcctcctctccctcttctttctctttttcccacctagcaaaggagtagtagcaatccagcaaactcagagccactccaccttgtctccctcgtccaagtccacgacgagccgcggcggtggcggcggcggaggaggcatagcgagtgggggctgaaaatggtggtggtggacgcgtcggagttcggggaggaggggttcgacccgaagtggtggacgcgcgccacccgtcggagctgctcgaccgcttcctcgccgacgccgaggagcgcctccgctcggccgccgacgacgccgcggccgcgctcgagcaggacagcgccgacgcgctccaccgcatcccgctcgcctgccgcgacgcgctccgcctccgcgatgatgccgtctcgctccgttcccatctcgcctccgtcctccagttgctctcccaggtgccccacgctctcctgctagttggagaaaccggcggcggcaaatccgtgcacgcgaggcggcgtcggcgttgccctgctcggccgcccggtgccggcgccgctaccgaaccactggcgcctcggcttcaaccactccgcctgcgccgtgtccgcgcgcagaggagagagcacgtgaagagagagacaatgcgagggagaggatggcgagcgctcccgactgaccaaatttggccagcgatcccagtcatttggccagccgactgcgatagctagcgtgatagccagtccgttggaccctgttttttcccatcgatggccaaaatttggcttggccagccggataccgattccgttggagttgctcttacgctggaaatataacgctgcctcatgtgaggggaacgagcctctcagcctcgattattttcaaccggaatttcggtattttgaaatcaaaagtttaaattcaatttttgagcattgagttttgtctagtttttgacggttcatgacacaggcaaattgttagggaccactacaccatcaatcctaaaataaagcaaccttatacgtaaagtcctacgaatttgaatgtactaagttgatttaatttagaaacggagcaagtatatcgttaaaaggcttacacctgcaattaatggtataatcccggtccaaacacaattttttttatttctaattttttattaaaatatttacaaaactaatttgtgtttcaaaaatttacataactagtcgcccgccactctttgggagggtgatttgagagtgatttttaaaaattagttttgtaaattttgtaaaatttaaaaattatttttgtaaatttacaaaactagttgccctttgaaacacaaaattagttttgtaaatattttaataaaaaaaattcatccaaacacgacgagtgaggaagctgtctccggatagacctacaatttgaggcccagtgattagcacaacacaaagttggcccagtaacaaaggctcaagacttttggtgactattgagctgtttcttggaaaaagtacaccgaaggtccctcaacttgtcatcaggttacaaaatcgtccctcaaccgcaataccagatatatgacatcctttaacttacaaaaccattcactttagatccctcgatggttctgacatcatcctgtcttatttcttctcttctttttctcttttcttttatttcttcttttctcctctcttctcgatgcagccggcggcagatggggagaggtggcgtggagcgcatcccagtccaggcctccgagctgttgttcgacgtcgacgagtcggcgcggcggagcgcgccaccggggcggtcgccagggtccgggcgcttgcgagggacagcgagtggaaccggcgatgcttcgtgtctgtcggcacggggcgcatgctggccgcggcgttcgagtctctcgccgccgcggcattggtttgcatgatgccattggacaaggaagcggccagggtcttggcctcgtctagctcgatgggttctcgatctcgtcgcaattgccaagcacgggagcttgcccagaaggctgaacgttgtactggttgtgatcatcaaggctctgatctacccgcaggtcaccaaggccgccatggtcgccaccacccacctggtgagctccgacaagcgcgtcgcgacgagggtagcgtccacggggctcatcccaacactaatcgaggccctcgtagacgctgacaagagcgtgtccgagaaggccctggcggtgttcgacgcaatgctcacctcggaggaaggccgcgcgagcgcgcggggccacgccctcgcaatgccggtccttgtgaagaagatgttccgcgtgtccgatgtggccaccgagctttgccgccgccaccgctcattgggctcggtcaagggaggggccggtgagcccgttcggacggtgaggagaaagccgacgatgggcactggccggtgaggaggatagacgatgaaagccggcggggagaagctagatcgcccatcccgtctcccccacccaccccgaccggcacgcggagcagcgacgaccagcggcgatgtggaggagggtgtcggcgtaagtggcggcggcaaaggagggatggggatccggccgaggtcgtcgacaccctagatccgcaggcgctgcaccacctaggtgtggatgctggtgctcctgttcttcttcaccggcaagggcgccctggggcagctcaacattgagaccggcatccccatcagttagatcgagccgctcatcctcttcaatgtgcccaccgccatcgccacgctagtagccggctccacctaccggcgaaagcgagcgagaggccatggtcgtagccgtctccaccgcagccggcggagctcaccgtgtccaagtcatcggccctcggccctcctatccaccgcgctcttccctcgccaaccgccggccgaaccggccttgccctccgccacgccgcccgcgccaccatgcgtcgccgcctcaccccgacaacaacgcgcagccacgacaatggcgccgcacggccctcctctccgccgcgctccttccctgtcagccgccatccacgcccagaggaaaaaggatagacgaggggagaagaggggaaaaaaagagagagggcggtgacatggtctcccttacatatggggcccatgtggggcccatgtgggtctcacgttgactcagccgtcacgttggatataaccggagataaaaccaccgaggaacataaagtgaacagttttgtgagttgagggatgtcatatatctggttttgcgtttaggggacgattttgtaactcgatgacaaattgagggaccttcggtgtactttttccataagtgaacgtgacacccgagaatgggctggtgggtgttggaagagcgcccatctcatttctggttaacgtttgtgtagtcatgagttgattacctcccgtcacaactaaaatgctcaccctgctcgatgcgcgaaacagaaaaagaaaaggaacaattgccacatcaccctatgactacgaggaaacagcttctgagcttctttcgaactagaaacacgacattaacaattgtgcggaaaacatcccaacccacctcacggggcccacccaccatccaacccacacttttcagagcaaatataatagtaagttataagtctactataaacttatacgaagaagagaggcaacaaaaaaaataagagtattggttcttatgtaagaactagcttaacacaagcttcaagataaatacattaaatatataagtgagagatagagagaagaaaaaaattatagccaaattttatagctaatctattatatatctataatgttagcttcaagataagctaatatagtactaattgagctcttgagaagtttaatgatcgagctttgcttaaacaaaaagcgataaacccacggcatttatctcctttctcctgtactccgtccgctgtacgtgcgtgcgggcgtgagcggtgagccgtataatcaatcctcttgcttcgaatggacagaaggaagggggggggggggggggggtgattttcttgtccggttccgcgcgcgcgacacccacacacgtcgccgccacgtgtacgtgtcacgctcacacctcccgtgccgcctcgcccgcccgattttggtgagcggccgcggtccccccctccccatcctccatcgtccggccgtttcgtttcgtctccccgccgcgttcttaaatcccaagcccaagccgccctcgcacttcctcttcccccacctcgccgagctccacgccgccgccgcggcgccccgtctcccacgccgcttcgccccgtcgtctgcgggggagccgcttggagtcaagagcagcgaccggttcaagtctcgggggacgactcgactcctccacgcgggtcgcggactcagcggtgccgtactctgccacccgtgtgtgcctgatatatgtgagttcgtgccttttcccttgggtggcggcagcagcagctga
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| CDS seq | atggttcggggaggaggggttcgacccgaagtggtggacgcgcgccacccgtcggagctgctcgaccgcttcctcgccgacgccgaggagcgcctccgctcggccgccgacgacgccgcggccgcgctcgagcaggacagcgccgacgcgctccaccgcatcccgctcgcctgccgcgacgcgctccgcctccgcgatgatgccgtctcgctccgttcccatctcgcctccgtcctccagttgctctcccaggtcaccaaggccgccatggtcgccaccacccacctggtgagctccgacaagcgcgtcgcgacgagggtagcgtccacggggctcatcccaacactaatcgaggccctcgtagacgctgacaagagcgtgtccgagaaggccctggcggtgttcgacgcaatgctcacctcggaggaaggccgcgcgagcgcgcggggccacgccctcgcaatgccggtccttgtgaagaagatgttccgcgtgtccgatgtggccaccgagctttgccgccgccaccgctcattgggctcggtcaagggaggggccgaaggaagggggggggggggggggggtgattttcttgtccggttccgcgcgcgcgacacccacacacgtcgccgccacgtgtacgtgtcacgctcacacctcccgtgccgcctcgcccgcccgattttggtgagcggccgcggtccccccctccccatcctccatcgtccggccgtttcgtttcgtctccccgccgcgttcttaaatcccaagcccaagccgccctcgcacttcctcttcccccacctcgccgagctccacgccgccgccgcggcgccccgtctcccacgccgcttcgccccgtcgtctgcgggggagccgcttggagtcaagagcagcgaccggttcaagtctcgggggacgactcgactcctccacgcgggtcgcggactcagcggtgccgtactctgccacccgtgtgtgcctgatatatgtgagttcgtgccttttcccttgggtggcggcagcagcagctga
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| Protein seq | MVRGGGVRPEVVDARHPSELLDRFLADAEERLRSAADDAAAALEQDSADALHRIPLACRDALRLRDDAVSLRSHLASVLQLLSQVTKAAMVATTHLVSSDKRVATRVASTGLIPTLIEALVDADKSVSEKALAVFDAMLTSEEGRASARGHALAMPVLVKKMFRVSDVATELCRRHRSLGSVKGGAEGRGGGGGGDFLVRFRARDTHTRRRHVYVSRSHLPCRLARPILVSGRGPPLPILHRPAVSFRLPAAFLNPKPKPPSHFLFPHLAELHAAAAAPRLPRRFAPSSAGEPLGVKSSDRFKSRGTTRLLHAGRGLSGAVLCHPCVPDICEFVPFPLGGGSSS |
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| Function | U-box domain-containing protein 21 [UniProtKB/Swiss-Prot:Q5PNY6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0035720 | OsKeNa_01g0035720.01 | Chr01 | 33600960 | 33606345 | + | NAM | ||
| CDS seq | atggttcggggaggaggggttcgacccgaagtggtggacgcgcgccacccgtcggagctgctcgaccgcttcctcgccgacgccgaggagcgcctccgctcggccgccgacgacgccgcggccgcgctcgagcaggacagcgccgacgcgctccaccgcatcccgctcgcctgccgcgacgcgctccgcctccgcgatgatgccgtctcgctccgttcccatctcgcctccgtcctccagttgctctcccaggtcaccaaggccgccatggtcgccaccacccacctggtgagctccgacaagcgcgtcgcgacgagggtagcgtccacggggctcatcccaacactaatcgaggccctcgtagacgctgacaagagcgtgtccgagaaggccctggcggtgttcgacgcaatgctcacctcggaggaaggccgcgcgagcgcgcggggccacgccctcgcaatgccggtccttgtgaagaagatgttccgcgtgtccgatgtggccaccgagctttgccgccgccaccgctcattgggctcggtcaagggaggggccgaaggaagggggggggggggggggggtgattttcttgtccggttccgcgcgcgcgacacccacacacgtcgccgccacgtgtacgtgtcacgctcacacctcccgtgccgcctcgcccgcccgattttggtgagcggccgcggtccccccctccccatcctccatcgtccggccgtttcgtttcgtctccccgccgcgttcttaaatcccaagcccaagccgccctcgcacttcctcttcccccacctcgccgagctccacgccgccgccgcggcgccccgtctcccacgccgcttcgccccgtcgtctgcgggggagccgcttggagtcaagagcagcgaccggttcaagtctcgggggacgactcgactcctccacgcgggtcgcggactcagcggtgccgtactctgccacccgtgtgtgcctgatatatgtgagttcgtgccttttcccttgggtggcggcagcagcagctga
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| Protein seq | MVRGGGVRPEVVDARHPSELLDRFLADAEERLRSAADDAAAALEQDSADALHRIPLACRDALRLRDDAVSLRSHLASVLQLLSQVTKAAMVATTHLVSSDKRVATRVASTGLIPTLIEALVDADKSVSEKALAVFDAMLTSEEGRASARGHALAMPVLVKKMFRVSDVATELCRRHRSLGSVKGGAEGRGGGGGGDFLVRFRARDTHTRRRHVYVSRSHLPCRLARPILVSGRGPPLPILHRPAVSFRLPAAFLNPKPKPPSHFLFPHLAELHAAAAAPRLPRRFAPSSAGEPLGVKSSDRFKSRGTTRLLHAGRGLSGAVLCHPCVPDICEFVPFPLGGGSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.624238 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0865700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64570 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036110 | RBH | 0.0 | 0.0 | 0.706656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035500 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035260 | RBH | 0.0 | 0.0 | 1.179481 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0551800 | RBH | 0.1259325 | 0.2026755 | 1.518293 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0547000 | RBH | 0.2695475 | 0.0651795 | 2.62681 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035310 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035460 | RBH | 0.495049 | 0.000000 | 1.675871 |
