Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0865700 | OGI:01111240 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37464074-37465567 | ||||||||
| Gene Symbol | OsPUB31 | ||||||||||
| DNA seq | AAAGAAATGGGATTATCCTCAAAAGAATAAATGAGCAACCTAAAAACAGCTCAGTTGAGATACACATATCTTTTCTCTAGGCACAATCATGTTCTCTCCTCTTGATCCAAGTAAATTTGGAAAAAGAAAAAAATGGCAGCAAAAAGAAAGAAAGGAGAAAAAAAAAGAAGAAGAATGAACAATGGAGTGGTGGTCGTCATGATGGGTAAAGCGCCAAGAAGCTGGGAGACAAGCATGGCGAGGCCCTCCAGACCCTGGAGTGCAGCTTGAGCACCTCGTGCGCCTTCTCCTTGGTCTTCACCCCGCACTGCTCCGACCGCAGCGCCAGGCACAGCTTCCCCACCACGCCGCACTGCGCCATCTCCTGCAGCACCGCCGGCGTCGCCGCGTGCCGCGCCACCGACCGCAGCACGCGCACCGCCCGCTCGCTCGCCGCCTCCGACACCCGCAGCACCTTCTTCCCCACCACGGCCACGCCCGCCGCGTGCGCCACCAGCTCCGCGCGCCCCTCCGCGCACGTGCACAGCCGGTCCAGCACGGCCAGCGCCAGCTCGCACACGCGCCGCTCGGGCTCGTCCAGCAGCAGCTCCACCAGCGCCGCCACCGCGCCGGCGCCCACGATCTTCACGCGGTGCCGGCCGTACGGGCAGAGCGCGGCGAGCGCGTGGAGGGACGCCTTGGTGGCCCGCGCCGAGACGCGGTCGCGGACCACGCCGACCACCTCGGCGAGGAGCTCCGCGTTGAGGCCGATCACCCACGCCGGGACCACCGCGTCGGCGAGCGTCCTCACGAGCTGCACCGCGTGCGCCCGCGACTGGAGATTCGACGAGCGGAGCACGGCCGTGAGGGACTCCGCCAGGTTGCCGTGCCTGGTCGAGACGCCGATCAGCTCCTGCTCCGGGATCCGGAGCGACGCGAGGACACCAACCGCCTCCTCCCGCGCCGTCGAGCAGGCGCTGCCGCTGGTCACGACGCGAGATAGCACGTCGAACACCCCGCCCTGGGACTCCAGCATTGCCCTGCTATCCTCGCACTCCGCCGCCAGCTCCCGCAGCCTCCTGAGCGCGCCCACCTGCGCCGCGGCGGCGTCGGACAGGAGCGACGCAACCTCGTCGCTCGAAACCGGTCGTAGCGCGGCCACCTCCTCGTCCACGGCCGACCCGGGGGAGACGGAGGCCGCCCACGACTGGATCAGGCGGCGCAGGGTGTGGTTGGGCGTGAGCTCCAGCCCGTGCTCGAGCGGCTGCCGCGTGACGGGACACGTCCGGCGGGCCCCCGGCGCGGCGAGCCACCGCGCGATCGCGGCGCGGTCGTACGAGATCCCCGTAGGGAGCGTGACGGGGTCGCGCATGAGCTGCAGCGAGATCGGGCAGACGAAGTAGGACGGCACCTCGGCCGCCGCGCTCGCCATCGCTGCCATATCCGTCACCAGTAGTAGGAGTGCACCAGCCGATCGCCACGCCACGCACTTGTTCACCGGAATGCGCGCGAGGG
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| CDS seq | ATGGCAGCGATGGCGAGCGCGGCGGCCGAGGTGCCGTCCTACTTCGTCTGCCCGATCTCGCTGCAGCTCATGCGCGACCCCGTCACGCTCCCTACGGGGATCTCGTACGACCGCGCCGCGATCGCGCGGTGGCTCGCCGCGCCGGGGGCCCGCCGGACGTGTCCCGTCACGCGGCAGCCGCTCGAGCACGGGCTGGAGCTCACGCCCAACCACACCCTGCGCCGCCTGATCCAGTCGTGGGCGGCCTCCGTCTCCCCCGGGTCGGCCGTGGACGAGGAGGTGGCCGCGCTACGACCGGTTTCGAGCGACGAGGTTGCGTCGCTCCTGTCCGACGCCGCCGCGGCGCAGGTGGGCGCGCTCAGGAGGCTGCGGGAGCTGGCGGCGGAGTGCGAGGATAGCAGGGCAATGCTGGAGTCCCAGGGCGGGGTGTTCGACGTGCTATCTCGCGTCGTGACCAGCGGCAGCGCCTGCTCGACGGCGCGGGAGGAGGCGGTTGGTGTCCTCGCGTCGCTCCGGATCCCGGAGCAGGAGCTGATCGGCGTCTCGACCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGCTCCGCTCGTCGAATCTCCAGTCGCGGGCGCACGCGGTGCAGCTCGTGAGGACGCTCGCCGACGCGGTGGTCCCGGCGTGGGTGATCGGCCTCAACGCGGAGCTCCTCGCCGAGGTGGTCGGCGTGGTCCGCGACCGCGTCTCGGCGCGGGCCACCAAGGCGTCCCTCCACGCGCTCGCCGCGCTCTGCCCGTACGGCCGGCACCGCGTGAAGATCGTGGGCGCCGGCGCGGTGGCGGCGCTGGTGGAGCTGCTGCTGGACGAGCCCGAGCGGCGCGTGTGCGAGCTGGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCGGAGGGGCGCGCGGAGCTGGTGGCGCACGCGGCGGGCGTGGCCGTGGTGGGGAAGAAGGTGCTGCGGGTGTCGGAGGCGGCGAGCGAGCGGGCGGTGCGCGTGCTGCGGTCGGTGGCGCGGCACGCGGCGACGCCGGCGGTGCTGCAGGAGATGGCGCAGTGCGGCGTGGTGGGGAAGCTGTGCCTGGCGCTGCGGTCGGAGCAGTGCGGGGTGAAGACCAAGGAGAAGGCGCACGAGGTGCTCAAGCTGCACTCCAGGGTCTGGAGGGCCTCGCCATGCTTGTCTCCCAGCTTCTTGGCGCTTTACCCATCATGA
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| Protein seq | MAAMASAAAEVPSYFVCPISLQLMRDPVTLPTGISYDRAAIARWLAAPGARRTCPVTRQPLEHGLELTPNHTLRRLIQSWAASVSPGSAVDEEVAALRPVSSDEVASLLSDAAAAQVGALRRLRELAAECEDSRAMLESQGGVFDVLSRVVTSGSACSTAREEAVGVLASLRIPEQELIGVSTRHGNLAESLTAVLRSSNLQSRAHAVQLVRTLADAVVPAWVIGLNAELLAEVVGVVRDRVSARATKASLHALAALCPYGRHRVKIVGAGAVAALVELLLDEPERRVCELALAVLDRLCTCAEGRAELVAHAAGVAVVGKKVLRVSEAASERAVRVLRSVARHAATPAVLQEMAQCGVVGKLCLALRSEQCGVKTKEKAHEVLKLHSRVWRASPCLSPSFLALYPS |
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| Function | E3 ubiquitin-protein ligase PUB23 [UniProtKB/Swiss-Prot:Q84TG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0865700 | OsNip_01t0865700-00 | Chr01 | 37464074 | 37465567 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCGATGGCGAGCGCGGCGGCCGAGGTGCCGTCCTACTTCGTCTGCCCGATCTCGCTGCAGCTCATGCGCGACCCCGTCACGCTCCCTACGGGGATCTCGTACGACCGCGCCGCGATCGCGCGGTGGCTCGCCGCGCCGGGGGCCCGCCGGACGTGTCCCGTCACGCGGCAGCCGCTCGAGCACGGGCTGGAGCTCACGCCCAACCACACCCTGCGCCGCCTGATCCAGTCGTGGGCGGCCTCCGTCTCCCCCGGGTCGGCCGTGGACGAGGAGGTGGCCGCGCTACGACCGGTTTCGAGCGACGAGGTTGCGTCGCTCCTGTCCGACGCCGCCGCGGCGCAGGTGGGCGCGCTCAGGAGGCTGCGGGAGCTGGCGGCGGAGTGCGAGGATAGCAGGGCAATGCTGGAGTCCCAGGGCGGGGTGTTCGACGTGCTATCTCGCGTCGTGACCAGCGGCAGCGCCTGCTCGACGGCGCGGGAGGAGGCGGTTGGTGTCCTCGCGTCGCTCCGGATCCCGGAGCAGGAGCTGATCGGCGTCTCGACCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGCTCCGCTCGTCGAATCTCCAGTCGCGGGCGCACGCGGTGCAGCTCGTGAGGACGCTCGCCGACGCGGTGGTCCCGGCGTGGGTGATCGGCCTCAACGCGGAGCTCCTCGCCGAGGTGGTCGGCGTGGTCCGCGACCGCGTCTCGGCGCGGGCCACCAAGGCGTCCCTCCACGCGCTCGCCGCGCTCTGCCCGTACGGCCGGCACCGCGTGAAGATCGTGGGCGCCGGCGCGGTGGCGGCGCTGGTGGAGCTGCTGCTGGACGAGCCCGAGCGGCGCGTGTGCGAGCTGGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCGGAGGGGCGCGCGGAGCTGGTGGCGCACGCGGCGGGCGTGGCCGTGGTGGGGAAGAAGGTGCTGCGGGTGTCGGAGGCGGCGAGCGAGCGGGCGGTGCGCGTGCTGCGGTCGGTGGCGCGGCACGCGGCGACGCCGGCGGTGCTGCAGGAGATGGCGCAGTGCGGCGTGGTGGGGAAGCTGTGCCTGGCGCTGCGGTCGGAGCAGTGCGGGGTGAAGACCAAGGAGAAGGCGCACGAGGTGCTCAAGCTGCACTCCAGGGTCTGGAGGGCCTCGCCATGCTTGTCTCCCAGCTTCTTGGCGCTTTACCCATCATGA
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| Protein seq | MAAMASAAAEVPSYFVCPISLQLMRDPVTLPTGISYDRAAIARWLAAPGARRTCPVTRQPLEHGLELTPNHTLRRLIQSWAASVSPGSAVDEEVAALRPVSSDEVASLLSDAAAAQVGALRRLRELAAECEDSRAMLESQGGVFDVLSRVVTSGSACSTAREEAVGVLASLRIPEQELIGVSTRHGNLAESLTAVLRSSNLQSRAHAVQLVRTLADAVVPAWVIGLNAELLAEVVGVVRDRVSARATKASLHALAALCPYGRHRVKIVGAGAVAALVELLLDEPERRVCELALAVLDRLCTCAEGRAELVAHAAGVAVVGKKVLRVSEAASERAVRVLRSVARHAATPAVLQEMAQCGVVGKLCLALRSEQCGVKTKEKAHEVLKLHSRVWRASPCLSPSFLALYPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0439400 | RBH | 2.009923 | 1.762213 | 1.130342 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0865700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040830 | RBH | 0.0 | 0.026809 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040380 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0582400 | SBH | 6.9198655 | 66.684132 | 5.490916 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040050 | RBH | 0.000000 | 0.0 | 0.005668 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0616000 | RBH | 0.2671505 | 4.4344525 | 0.0612185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040360 | RBH | 0.0 | 4.936337 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040610 | RBH | 0.0 | 3.228462 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040560 | RBH | 0.0 | 0.081374 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040420 | RBH | 0.0 | 2.130749 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040870 | RBH | 0.0 | 1.164576 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040540 | RBH | 0.0 | 0.534709 | 0.0 |
