Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0013180 | OGI:01032550 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:10859842-10861399 | ||||||||
| Gene Symbol | PRX11, OsPOD, prx11, Osprx11, OsPRX11 | ||||||||||
| DNA seq | aattaacatcgcagttaattatatttttattatatccagatttgtatgattaacttatgtaacagattaacatggctgagaaattacagagaacaaattacaacaaatggaaatcaaaagaatggatgtgtgaaagccaaatcaatctactacaagcatagtcgtcgttgatcatcgtctctgtgtggtcgtcttgtgtccatgcatgcaatgcatttagtacaagtggttgatggcgctgcacttcttcctgatctcccccttgctcccctccggcatgggcagctggctgagcttgagcagcgagtcggagaagtcggagtcccaaagggtggcattgtcggcgtactcgtggaccttggagagcgacgtggcgtccgtgagcagctgccagtcggagtggaaggtgacgatcttggcgaggttgttgtggtagtaggtgttgtcgaggaagtcgctgatcttgcggacgcggctgacgaagcccggcatgaacctggcgacgacggaggcgtcctcgtcgcggacgttgttgacgacgtccgggttggcggcctgggagcacttgtagttgaggaggtcgcggtacgccggggtgatctgctgcggcggctcggagaggcggccggtgaaggaggagcagtggccctggccgatggagtgcgcgccggagaggatgaccagctgctcggtgtcgaagcccttggcggcgaagttgtccttgagctgctgcacggtcatggtggagtccgggagctccgcctgggcctcgtcggccctggagacgacgccgtcgaggcggcccgcggggacgtcgaagtggacgtggccgttgctgaggatgctgccggcgtcgcgcgccgcgtagatgaggatgtcggagcaggacaccacgccggggcaccgcttctccacggccgccttgatctcctccaggaggtcgaacgccgccagcccgatgttcaccggcgcctccttctccgggtgtgggttctcgtacgacttgtccagcaggactgacccatcgcaaccctgcatacataaatacataattgcattaatccacaatgcttgaaagttggaactaagctatgtaagtagctagatcagttgagatgatcatctagcttctccacatgtacttcctccgtttcaaaatatatagctgaggttaatttatttttaactaacaaacgttacgaaaaagaaacagaaatagtagtagtaatgatattttatgtaccctgacgaagcagtcgtggaagaggaggcggactagggcagcgccggtgcggcggttctgcttgagagccttgatgacgtgccacttgatcacgttctcgacgcccttgcacttcttgtggtagtacccgaccttgagctcgctggccgcggccgccgatccggcgaggagcagcgccgccgcctgcacggcgacgagggcgcagaggatggccaccgacagcctcatgtttcccccaaaagcttatgtgaccaagcaaccggtcctgtagaggaaagcggcttgagagaggtgcttgagctgcgagctggtgat
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| CDS seq | atgaggctgtcggtggccatcctctgcgccctcgtcgccgtgcaggcggcggcgctgctcctcgccggatcggcggccgcggccagcgagctcaaggtcgggtactaccacaagaagtgcaagggcgtcgagaacgtgatcaagtggcacgtcatcaaggctctcaagcagaaccgccgcaccggcgctgccctagccgccaacccggacgtcgtcaacaacgtccgcgacgaggacgcctccgtcgtcgccaggttcatgccgggcttcgtcagccgcgtccgcaagatcagcgacttcctcgacaacacctactaccacaacaacctcgccaagatcgtcaccttccactccgactggcagctgctcacggacgccacgtcgctctccaaggtccacgagtacgccgacaatgccaccctttgggactccgacttctccgactcgctgctcaagctcagccagctgcccatgccggaggggagcaagggggagatcaggaagaagtgcagcgccatcaaccacttgtactaa
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| Protein seq | MRLSVAILCALVAVQAAALLLAGSAAAASELKVGYYHKKCKGVENVIKWHVIKALKQNRRTGAALAANPDVVNNVRDEDASVVARFMPGFVSRVRKISDFLDNTYYHNNLAKIVTFHSDWQLLTDATSLSKVHEYADNATLWDSDFSDSLLKLSQLPMPEGSKGEIRKKCSAINHLY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0013180 | OsKeNa_01g0013180.01 | Chr01 | 10860058 | 10861312 | - | NAM | ||
| CDS seq | atgaggctgtcggtggccatcctctgcgccctcgtcgccgtgcaggcggcggcgctgctcctcgccggatcggcggccgcggccagcgagctcaaggtcgggtactaccacaagaagtgcaagggcgtcgagaacgtgatcaagtggcacgtcatcaaggctctcaagcagaaccgccgcaccggcgctgccctagccgccaacccggacgtcgtcaacaacgtccgcgacgaggacgcctccgtcgtcgccaggttcatgccgggcttcgtcagccgcgtccgcaagatcagcgacttcctcgacaacacctactaccacaacaacctcgccaagatcgtcaccttccactccgactggcagctgctcacggacgccacgtcgctctccaaggtccacgagtacgccgacaatgccaccctttgggactccgacttctccgactcgctgctcaagctcagccagctgcccatgccggaggggagcaagggggagatcaggaagaagtgcagcgccatcaaccacttgtactaa
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| Protein seq | MRLSVAILCALVAVQAAALLLAGSAAAASELKVGYYHKKCKGVENVIKWHVIKALKQNRRTGAALAANPDVVNNVRDEDASVVARFMPGFVSRVRKISDFLDNTYYHNNLAKIVTFHSDWQLLTDATSLSKVHEYADNATLWDSDFSDSLLKLSQLPMPEGSKGEIRKKCSAINHLY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0013180 | OsKeNa_01g0013180.02 | Chr01 | 10859842 | 10861399 | - | IsoSeq | ||
| CDS seq | atgccaccctttgggactccgacttctccgactcgctgctcaagctcagccagctgcccatgccggaggggagcaagggggagatcaggaagaagtgcagcgccatcaaccacttgtactaaatgcattgcatgcatggacacaagacgaccacacagagacgatgatcaacgacgactatgc |
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| Protein seq | MPPFGTPTSPTRCSSSASCPCRRGARGRSGRSAAPSTTCTKCIACMDTRRPHRDDDQRRLC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 103.835854 | 0.236853 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0294700 | RBH | 2.100928 | 3.311872 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19020 | RBH | 1.330772 | 2.086429 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0294700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013420 | RBH | 0.0 | 186.451141 | 3.718535 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002540 | SBH | 0.0 | 47.219761 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013450 | RBH | 0.0 | 360.318817 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012930 | RBH | 0.000000 | 15.624075 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013040 | RBH | 2.262493 | 410.602509 | 3.193094 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0177900 | RBH | 31.4077655 | 22.9268415 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012980 | RBH | 0.0 | 36.944351 | 0.089050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0177100 | RBH | 28.068312 | 0.2205585 | 0.147538 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012970 | RBH | 0.183962 | 2.434933 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013070 | RBH | 0.0 | 108.300026 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013030 | RBH | 0.0 | 269.874359 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013130 | RBH | 1.555552 | 24.249838 | 1.023734 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012820 | RBH | 0.634557 | 240.183304 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013060 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012820 | SBH | 0.0 | 0.0 | 0.0 |
