Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0002540 | OGI:05006000 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:2103414-2104893 | ||||||||
| Gene Symbol | PRX65, prx65, OsPRX65, prx67 | ||||||||||
| DNA seq | atccatccctccatcgattgatctctcacactcggatcttcttcttgattggttgcacacatcatcatcatcatcatcatcggagatggtgaagcttgtgtgctttgttgtggtggtgttcatggcggcggcggcggcgatggccggagccgatcgcgagctgaaggttgggtactacgagaagacgtgcaaggacgtggagaagatcgtgaactccatcgtcgtcaactccatcaaggacaaccgcggcaagggcgctggcctcgtccgcctcctcttccacgactgcttcgtcagggtaaggatcgatcgaactagtcatttgaccgaacgccatgcgtgcatgcaatgcaatgcacgtagagctcgctcgctcgctcgctaggcagcaatggcgggtttgatgattaatggagttgcttgcttcgtcgcgtgcaggggtgtgacgcctccgtgcttctggagaagagcgagatgaacaggcagccggagaaggaatctccggcgaacatcgggatccgggggatggacgtgatcgacgcgatcaaggcggtgctggaggcgcggtgccccaacacggtgtcgtgcgccgacatcatcgcgtacgcggcgcgcgacgcgtccaggtacctcagccacggcggcgtcgacttccccgtccctgccggccgcctcgacggcgtggtctcccgcagccgcgacgccgacgcgttcctcccggacgccgccgcaaacctcaccgacctcgtccgcaacttccgccgcaagaacttcaccgtggaggagctcgtcatcctctccggcgcgcactccatcggcgtcacccactgcacctccttcgccggccgcctcaccgccccggacgcccagatcaacccgggctaccgcagcctcctcgtctccaagtgcggcggcgtgtcgccgacgccggccaacaaccacgtcgtggtgaacaacgtgcgcgacgaggacggcgccgccgtggcgagggtcatgccggggtttgcggcgagggtgaggaaggcgagggactacctggacaacagctactaccacaacaacctcgccatggcggtgacgttccacgcggactgggcgctgctcaccgggaaggaggcgcgcgggcacgtcgtggagtacgccaagaacgcgacgctgtggaacgtggacttcggcgacgcgctggtgaagctgagcaagctgcccatgccggcggggagcaagggggagatcagggccaagtgcagcgccgtcaacggctaccaccattgacgtcgacgacgatccttccatcgatcgatcgatcgaacgatctcatggatatatgatgcagtagctttgaattaatgtttgactatgatatgatctctgtaactctattgtattttttgttccttcgcccgcgtgagtactagttcaaattcaattcgttgtactgcaaacttttcaaaataattatgatgcaaagtagttcaattgt
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| CDS seq | atggtgaagcttgtgtgctttgttgtggtggtgttcatggcggcggcggcggcgatggccggagccgatcgcgagctgaaggttgggtactacgagaagacgtgcaaggacgtggagaagatcgtgaactccatcgtcgtcaactccatcaaggacaaccgcggcaagggcgctggcctcgtccgcctcctcttccacgactgcttcgtcagggcgagggactacctggacaacagctactaccacaacaacctcgccatggcggtgacgttccacgcggactgggcgctgctcaccgggaaggaggcgcgcgggcacgtcgtggagtacgccaagaacgcgacgctgtggaacgtggacttcggcgacgcgctggtgaagctgagcaagctgcccatgccggcggggagcaagggggagatcagggccaagtgcagcgccgtcaacggctaccaccattga
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| Protein seq | MVKLVCFVVVVFMAAAAAMAGADRELKVGYYEKTCKDVEKIVNSIVVNSIKDNRGKGAGLVRLLFHDCFVRARDYLDNSYYHNNLAMAVTFHADWALLTGKEARGHVVEYAKNATLWNVDFGDALVKLSKLPMPAGSKGEIRAKCSAVNGYHH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0002540 | OsKeNa_05g0002540.01 | Chr05 | 2103499 | 2104685 | + | NAM | ||
| CDS seq | atggtgaagcttgtgtgctttgttgtggtggtgttcatggcggcggcggcggcgatggccggagccgatcgcgagctgaaggttgggtactacgagaagacgtgcaaggacgtggagaagatcgtgaactccatcgtcgtcaactccatcaaggacaaccgcggcaagggcgctggcctcgtccgcctcctcttccacgactgcttcgtcagggcgagggactacctggacaacagctactaccacaacaacctcgccatggcggtgacgttccacgcggactgggcgctgctcaccgggaaggaggcgcgcgggcacgtcgtggagtacgccaagaacgcgacgctgtggaacgtggacttcggcgacgcgctggtgaagctgagcaagctgcccatgccggcggggagcaagggggagatcagggccaagtgcagcgccgtcaacggctaccaccattga
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| Protein seq | MVKLVCFVVVVFMAAAAAMAGADRELKVGYYEKTCKDVEKIVNSIVVNSIKDNRGKGAGLVRLLFHDCFVRARDYLDNSYYHNNLAMAVTFHADWALLTGKEARGHVVEYAKNATLWNVDFGDALVKLSKLPMPAGSKGEIRAKCSAVNGYHH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0002540 | OsKeNa_05g0002540.02 | Chr05 | 2103414 | 2104893 | + | IsoSeq | ||
| CDS seq | ccatccctccatcgattgatctctcacactcggatcttcttcttgattggttgcacacatcatcatcatcatcatcatcggaga |
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| Protein seq | PSLHRLISHTRIFFLIGCTHHHHHHHRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 2103711 | 2104437 | + | OsKeNa_05g0002540.02 | OsKeNa_05g0002540.02,OsKeNa_05g0002540.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 47.219761 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0134800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0134800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002510 | RBH | 0.0 | 18.434811 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002540 | RBH | 0.000000 | 94.871918 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002490 | RBH | 0.0 | 4.704132 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002560 | RBH | 0.000000 | 86.117538 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0031100 | RBH | 0 | 1.391594 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002500 | RBH | 0.000000 | 10.882762 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0030000 | SBH | 22.812691 | 34.709117 | 1.7404315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002500 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002420 | RBH | 0.0 | 51.780743 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002530 | RBH | 0.0 | 65.718643 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002540 | RBH | 0.000000 | 7.313235 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002560 | RBH | 0.000000 | 78.747391 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002410 | RBH | 0.000000 | 64.324478 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002590 | RBH | 0.000000 | 189.144211 | 0.000000 |
