Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_08g0011000 | OGI:01011440 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr08:13993995-13995066 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGGAGAATATGAGTCGTCACCTTCGTAAGCCAAAACTCGACGAGCTAAGAAAATTAATTTATGAGAGTATGGATGAAGAGGAGTTCGAGAGACGTTGGGCTGATTTTAAGGAGAATGGAGGCACGGGAAATGGACAATGGATCGCTCTGATGTACCGACTAAGGGAGAAATGGGCAGCTGCCTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTGAACTCAAAGCTTCACACCCTTCTAAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAAGGCCTGCGTAAGAAGGAGGCTCAGTTGGACGCTAAGTCTACCAATTCGGTCCCTTTTTGTAGAATAGACGCCGACCCATTGGAGAAAGACGCTGCCCGTATATACACCGCAGTCGTGTTCAAGAAAGTCCGTGCATAGATACGGCTAATTGCAGGACTTGAAGTCATCAGTGGGACTAATCAAGATGGTTCGTCATTGTATGTTGTTGGTTTGAAGGACGATAATGAGGTGTGGGATGAAGTGAGGGTTTCTTTTAAAGGCCAGGCTTTGGAAGGTGTGGAATGTCACTGTCGGAAGATGGAGTGCGAAGACATCCCTTGCTCACACATTTTTGTTGTAGTCAAGTTCCTTGGTTTTGACACCATCCCTCGTTGTTGTGTCGTGGATAGGTGGACAATGGGAGCAAAGGCGGCATTTAGGTCAGACAGGAATGCCGATCCTAATGTGTGGTCTGAACACATGGTTCGGTACCGTAGCCTCCAAAATCTAGGTAGTGATGCTTTCTTCGAGGCCGCTAGGAACCCTGAGCAGACAAAAAAGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCGTCATCTGATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCATTTTTCGTCTAGTAACCAGCCATTAGAGAAGAGAGTACTTGATCCTGAAGAGATTAGGGCAAAAGGAGCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACACAAATAACCAATAA
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| CDS seq | ATGAGTCGTCACCTTCGTAAGCCAAAACTCGACGAGCTAAGAAAATTAATTTATGAGAGTATGGATGAAGAGGAGTTCGAGAGACGTTGGGCTGATTTTAAGGAGAATGGAGGCACGGGAAATGGACAATGGATCGCTCTGATGTACCGACTAAGGGAGAAATGGGCAGCTGCCTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTGAACTCAAAGCTTCACACCCTTCTAAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAAGGCCTGCGTAAGAAGGAGGCTCAGTTGGACGCTAAGTCTACCAATTCGGTCCCTTTTTGTAGAATAGACGCCGACCCATTGGAGAAAGACGCTGCCCGTATATACACCGCAGTCGTGTTCAAGAAAGTCCGACTTGAAGTCATCAGTGGGACTAATCAAGATGGTTCGTCATTGTATGTTGTTGGTTTGAAGGACGATAATGAGGTGTGGGATGAAGTGAGGGCCGCTAGGAACCCTGAGCAGACAAAAAAGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCGTCATCTGATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCATTTTTCGTCTAGTAACCAGCCATTAGAGAAGAGAGTACTTGATCCTGAAGAGATTAGGGCAAAAGGAGCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACACAAATAACCAATAA
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| Protein seq | MSRHLRKPKLDELRKLIYESMDEEEFERRWADFKENGGTGNGQWIALMYRLREKWAAAYTDGKYLLGMRSNQRSESLNSKLHTLLKRNMSLMCLVKHVKLCIQGLRKKEAQLDAKSTNSVPFCRIDADPLEKDAARIYTAVVFKKVRLEVISGTNQDGSSLYVVGLKDDNEVWDEVRAARNPEQTKKAMDFLKGILDKGSSSDENIVAGDFGPMPTHFSSSNQPLEKRVLDPEEIRAKGAPSKRRRPFRETLHTNNQ |
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| Function | Protein FAR-RED ELONGATED HYPOCOTYL 3 [UniProtKB/Swiss-Prot:Q9LIE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_08g0011000 | OsKYG_08g0011000.01 | Chr08 | 13993995 | 13995066 | + | NAM | ||
| CDS seq | ATGAGTCGTCACCTTCGTAAGCCAAAACTCGACGAGCTAAGAAAATTAATTTATGAGAGTATGGATGAAGAGGAGTTCGAGAGACGTTGGGCTGATTTTAAGGAGAATGGAGGCACGGGAAATGGACAATGGATCGCTCTGATGTACCGACTAAGGGAGAAATGGGCAGCTGCCTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTGAACTCAAAGCTTCACACCCTTCTAAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAAGGCCTGCGTAAGAAGGAGGCTCAGTTGGACGCTAAGTCTACCAATTCGGTCCCTTTTTGTAGAATAGACGCCGACCCATTGGAGAAAGACGCTGCCCGTATATACACCGCAGTCGTGTTCAAGAAAGTCCGACTTGAAGTCATCAGTGGGACTAATCAAGATGGTTCGTCATTGTATGTTGTTGGTTTGAAGGACGATAATGAGGTGTGGGATGAAGTGAGGGCCGCTAGGAACCCTGAGCAGACAAAAAAGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCGTCATCTGATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCATTTTTCGTCTAGTAACCAGCCATTAGAGAAGAGAGTACTTGATCCTGAAGAGATTAGGGCAAAAGGAGCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACACAAATAACCAATAA
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| Protein seq | MSRHLRKPKLDELRKLIYESMDEEEFERRWADFKENGGTGNGQWIALMYRLREKWAAAYTDGKYLLGMRSNQRSESLNSKLHTLLKRNMSLMCLVKHVKLCIQGLRKKEAQLDAKSTNSVPFCRIDADPLEKDAARIYTAVVFKKVRLEVISGTNQDGSSLYVVGLKDDNEVWDEVRAARNPEQTKKAMDFLKGILDKGSSSDENIVAGDFGPMPTHFSSSNQPLEKRVLDPEEIRAKGAPSKRRRPFRETLHTNNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0166400 | SBH | 0.575565 | 0.658086 | 1.650285 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25260 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012020 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012380 | SBH | 0.297801 | 0.326272 | 0.477722 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012450 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011230 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0236300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012300 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0221000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011850 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013750 | RBH | 0.0 | 0.0 | 0.0 |
