Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_12g0012020 | OGI:01011440 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr12:15495805-15496806 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATGAGGAGGAGTTCGAGAGACGTTGGGCTGATTTTAAGGAGAATGGAGGCACGGGAAATGGTCAATGGATCACTCTGATGTACCGACTAAGGGAGAAGTGGGCAGCTGACTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTAAACTCAAAGCTTCACACCCTTCTGAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAACGCCTGTGTAAGAAGGAGGCTCAGTTGGACGCTAAGTCTACCAATTCGGTCCCTTTTTGTAGAAAAGATGCCGACCCATTGGAGAAAGACGTTGCCCGTATATACACAGCAGTCGTGTTCAAGAAAGTCCGTGCACAGATACGGCTAATTGCTAGACTTGAAGTCATCAGTGGAACTAATCAAGATGGTTCGTCACTTTATATTGTTGGTTTGAAGGACGATAATGAGGTGTGGGATGAAGTGAGGGTTACTTTTAGAGGCCAATCTTTGGAAGGTGTGGAGTGTCACTGTCGGAAGATGGAGTGCGAAGACATCTCTTGCTCACACATTTTTGTTGTACTCAAGTTCCTTGGTCTTGACACCATCCCTCGATGTTGTGTCGTGGATAGGTGGACAATGGAAGCAAAGGCGGCATTTAGGTCATACAGGAATACCGATCCTAATGTGTGGTCTGAACACATGGTTCGTTATCGTAGCCTCCGAAATGTGGGTAGTGATGCTTTCTTTGAGGCCGCTAGGAACCCTGAGCAGACAGAACGGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCGTCATCCTATGAGAACATCGTGGCCGGAGAATTTGGTCCTGTGCCAACTCACTTTTTGTCTAGTAACCAGCCATTAGAGAAGAGAGTCCTTGATCCTGATGAGATTGGGGGAAAAGGATCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACTCAAATAACAAATAA
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| CDS seq | ATGGATGAGGAGGAGTTCGAGAGACGTTGGGCTGATTTTAAGGAGAATGGAGGCACGGGAAATGGTCAATGGATCACTCTGATGTACCGACTAAGGGAGAAGTGGGCAGCTGACTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTAAACTCAAAGCTTCACACCCTTCTGAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAACGCCTGTGTAAGAAGGAGGCTCAGTTGGACGCTAAGTCTACCAATTCGGTCCCTTTTTGTAGAAAAGATGCCGACCCATTGGAGAAAGACGTTGCCCGTATATACACAGCAGTCGTGTTCAAGAAAGTCCGTGCACAGATACGGCTAATTGCTAGACTTGAAGTCATCAGTGGAACTAATCAAGATGGTTCGTCACTTTATATTGTTGGTTTGAAGGACGATAATGAGGTGTGGGATGAAGTGAGGGCCGCTAGGAACCCTGAGCAGACAGAACGGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCGTCATCCTATGAGAACATCGTGGCCGGAGAATTTGGTCCTGTGCCAACTCACTTTTTGTCTAGTAACCAGCCATTAGAGAAGAGAGTCCTTGATCCTGATGAGATTGGGGGAAAAGGATCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACTCAAATAACAAATAA
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| Protein seq | MDEEEFERRWADFKENGGTGNGQWITLMYRLREKWAADYTDGKYLLGMRSNQRSESLNSKLHTLLKRNMSLMCLVKHVKLCIQRLCKKEAQLDAKSTNSVPFCRKDADPLEKDVARIYTAVVFKKVRAQIRLIARLEVISGTNQDGSSLYIVGLKDDNEVWDEVRAARNPEQTERAMDFLKGILDKGSSSYENIVAGEFGPVPTHFLSSNQPLEKRVLDPDEIGGKGSPSKRRRPFRETLHSNNK |
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| Function | Protein FAR-RED ELONGATED HYPOCOTYL 3 [UniProtKB/Swiss-Prot:Q9LIE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_12g0012020 | OsAzu_12g0012020.01 | Chr12 | 15495805 | 15496806 | + | NAM | ||
| CDS seq | ATGGATGAGGAGGAGTTCGAGAGACGTTGGGCTGATTTTAAGGAGAATGGAGGCACGGGAAATGGTCAATGGATCACTCTGATGTACCGACTAAGGGAGAAGTGGGCAGCTGACTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTAAACTCAAAGCTTCACACCCTTCTGAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAACGCCTGTGTAAGAAGGAGGCTCAGTTGGACGCTAAGTCTACCAATTCGGTCCCTTTTTGTAGAAAAGATGCCGACCCATTGGAGAAAGACGTTGCCCGTATATACACAGCAGTCGTGTTCAAGAAAGTCCGTGCACAGATACGGCTAATTGCTAGACTTGAAGTCATCAGTGGAACTAATCAAGATGGTTCGTCACTTTATATTGTTGGTTTGAAGGACGATAATGAGGTGTGGGATGAAGTGAGGGCCGCTAGGAACCCTGAGCAGACAGAACGGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCGTCATCCTATGAGAACATCGTGGCCGGAGAATTTGGTCCTGTGCCAACTCACTTTTTGTCTAGTAACCAGCCATTAGAGAAGAGAGTCCTTGATCCTGATGAGATTGGGGGAAAAGGATCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACTCAAATAACAAATAA
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| Protein seq | MDEEEFERRWADFKENGGTGNGQWITLMYRLREKWAADYTDGKYLLGMRSNQRSESLNSKLHTLLKRNMSLMCLVKHVKLCIQRLCKKEAQLDAKSTNSVPFCRKDADPLEKDVARIYTAVVFKKVRAQIRLIARLEVISGTNQDGSSLYIVGLKDDNEVWDEVRAARNPEQTERAMDFLKGILDKGSSSYENIVAGEFGPVPTHFLSSNQPLEKRVLDPDEIGGKGSPSKRRRPFRETLHSNNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0225300 | SBH | 0.362048 | 0.743072 | 1.648821 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0225300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0011790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012160 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004310 | SBH | 0.716346 | 2.676292 | 3.569123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011900 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011230 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0213800 | SBH | 0 | 0.002271 | 0.1468895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0237700 | SBH | 0 | 0.155567 | 0.080735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010860 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012060 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008650 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011620 | SBH | 0.0 | 0.0 | 0.0 |
