Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKYG_06g0027040		OGI:06080870 \| 16/16			KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)			Chr06:29990026-29995348		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK206, OsRLCK206, RLCK214, OsRLCK214
DNA seq		aagaaaaaagttaaacgacttataattataatatgaattagagggagtacaaattagacatgttattatagtgcgTtttatatatactgtacatatcaacattgacgggcttcattgtcattgggtgatccatgagcaatccagatggaatgtgcatttcaactacttgctagagtattgaattattttccagctggcatcaaattacctcttggcctataacgatccgaaccctagttgacactggagctgaacttgtaatggttatatctattgtctggcttgattgatccatacatgtagatgtctcgtcaccacctttttcgacttcattacttagatcagaaggcttcttaggatcatctaataagatcacgcttccagaacgcagcattgcggcgacatccggcatggtgggccgaactgttggatcttcctgggtacagagcaatgccacttgagtgcaccgcattatctgatcaagttcatacccatgtcctaatgatggatctacaagctcatgtaaccttccgtccctccacatatgccaagcctgaaaaatatgtatatatatcctttaatataattcacaCatatatttgaatatatttagcatcaaatgttgcaatttagatttataatgtgggattagtaactcagagaatcaggaacataaaaataatgcgtgttcacttacatcccgtacaagatcacctatagcatccctctgcttataaagtatggaattctttcgtccactaatgatcactagaaccaagataccgaagctaaacacatccgtcttcactgaataaactcctcgagatgcatactccggagctttgaaaccactgaataaagaaagattaaaacagtcaagtcaacacaagtaaggaaacttatatttatgacatgtcagaaaactcatacctagtgcccacaacccttcttgtatgctcttctgcaacttctgaactcagtgaactggatgatccaaaatcggaaatctttgggttcatgttataatctaagaggatgttatctggtttcaaatccctatggacaatccataacatggaaagcttgtgtagataaacaagaccctctgcaaCacctttgattatattcaatcgctgaggccagtctaacaatgattttctcattttgtctgcaaaaaattgaaacaacaaatgtcatttttatgtaaaataagtgcaatttctatgcttatctaaatgaaattagattttctttaaaacaaattattggaagaaaaaccaactcagtgacatgggagttgttccactgtgcaaacataccaaagatgtaatggtgcaagctacccctgtccgcaaactcatacaccagaatcctttctttcccatggatgcaccaacccagtaacttaaccagattattgtgctgaacccttgcaagctgcaattcattgttgaaatcaaagtttactgcacattcatcgagtcttttgatggcaaccacaagtccattgggcaactgaccctgccatatttacttatgagtttagacaatattctctcaaaagatatcagcaattcagcatgcatctcgttgggaatacaaggacggtaggcattcacatgttaatttcataatgttgaggggttataattaccttgtaaactgtagcaaatccaccccgtccaatattgctattctctgagaaattatctgtagcatgcaaaatctgagagaagtcgaactttgagaatcctgggcagctctcttctgtacgagtacaaagctccaccagttcttcgatgtcaaggattttctgttcttgcaggtacactgttcctaagccattgaaaatccatccttatcaccaatGgaatagcaaccaacattaatataacttaaaaatatcaaatatcatgataatgcttgagcttctttgtatgatgatcagggatcaccagttcatcataattggtagattccaaatgcaagagtgctcactttgataataaatggacttctaataaaggatatcatgcattataatcatgttgtattatcactttaataatgtgattacaaaacaagctaaaattttaaaataatttagaaaatcagaactgcatttgatgttcattatttctatcttaacatatgtttgtcccgctatctaggccccttccaactaggggtgggcgttcggtttcctcagatgttgcggttcagtttctttggTtttttagaaattcggttctcaataaaaccaagctgaagagtttgtaacaaaaacaataaaccacgccgaacaaaccgaagttattcggtttggtttgtcggtttaccgagtaagccaaaaaaaagtacatacatgttgtgccatgCcccaggctgaagtcctgcaagcagcattgcaaggccacggtggtagtcagatgggctggataggatagggtatggactgtagggttaatgagagatggatggtattaatggacttttccattggtcaaaggcctggacattgtggttttcaagtaggggaatgggatcatagagattgatcggtttgtacggattcttcggttgttagagatgaggaaccgatggaaaagccgaagaccgatctacgggagaaataaaaccgaaggagaaaccgactaccgagaaaactgatagttcggttcggccttcggttttcggtgattttatgcccacccctacttccaactgtgtgtggtggcccatgataccaatgtcaaaaatataatatgcagtattttattctatctggttgagatatatcaaaataatggataagcaaaagagtactggtacaagcacatatgcacatataaacagtttggacatcgttgattcaaataggattgaaaagaaacctctgcctattgattttgatatttgagtaactacttacaaggaattcataaagtaattacatagatacctaaaggttgttccccagctttgcaaaatttagtatctccttgaacatgtatttcggtgaaccccgaaactcttgctggaaacctaaaggtagaaaatttttgccattattgtactaaaaccataaatgattttagcaaaggaaaagaagggacaatttcatatgataggggtgaataaatgaagacctgatggtagggcaacatgactagaggagcttcaatcaattcgttttcaagaagataaaaaaaaaagagtcatgctactgtgtgtaaaaatgttagaaatttattgaaacatcaatgctgaaacttaaataaactcgtgttttcatttcaagttggctgaattatttttttggcgaaatggagagcaggaaagaagggctagtttacagaagttctttgtctgctttatctttatctaaaaaaatcccccttattattgaagaaaacttcttttggagatagaattttggtcatgaaataatattgtattcttctccttccaaatatttggagagatgtagatcacaaaccaagccactgaattgtctctctcatagtccaattgcaccttgcagtaagctatgtcaacattctgtgagattgttatcgaaatcacgaggcttgtctgctgacctgacagtgcaagttaggatgacggaccaagcttcctaggttgatcttccacgtcttaaatttcagaggacatgtgaggacattacaggtcagtccaaatggcccaccatatagttttgtccatgatttggtcatagcagaatagctggtagacaagttggcctgggcattcaaagttcaaacacaacatatctgaagggtacactttatctaaagtttgtagcaacacgtgtcacatagctcccaacactgatctgcttgaactgcttctattctatatatggtctaaaatcaaactttagtcattagtcaaccaaattaatccagcggttagtttcaacaagacaaccgtgcttcaccttccatactgccattttgtcaaaataacatgataaaatgctggaatcaatatatgagaatggtacgttatgtaaacaactgcgtattgaaaattgtcttacctgatgtgacgatttgaactgtatttgactgcagtagccgccccctccatagcctgctaaacaaagatatggaaaacgatgggtatcattttgatatacagttgatcagcacaatgcaagttccatggttcatattatacagttcattagccttcttcttgagcggatttttttttggtttaacaaggagcagatttgttatatcaccatgcacaaatataagtttgatactacgaatcaaaactgaattttaaattggccgtagctaactgcagttggattacagtttcagaatttcagacaccaggttcactttaacagacttgttcaatcggaccactgcttctacctactaccactaagaatttttctcaaacacgccacgggctttgattacttattctaagtttctaacaagcgtcaatattgagaattgaacacaaccatacaaagagcaggatttcaccgaattactactactgttttcgcgggccgaatcactgaattagtactaactactaagaactgtaaatctgtactaatcatcagtgcaaaacaatgtttaccttgactcgacgattgctgctgctatcgacgagggcgatgagagggatgaggcggatgtacatgtcgatctcgtgctgcgcggcgcggagctcgtcggccatccgggcgccgaggagcaggcggtggaggtagccgcggtcctcctggcacgccgtgacgagcgcgtagcaccgccgcagcgcgccctggagctgctcgaggggccgcctggtggcctcccgccgcatcagctcggcgagctccagctcccgcagcaggccgccgacgagctccacgtgctgccccagccgccggcacgcgtcccggtggcggcgcgccgccagcgccgcctgcgccaccatggagaccagcccaagcgcgtcgacgccgaccagctgcgccacgttcgacgcctgcccgagaacgccccacaggctgctgctctccatggccgctccccgcgaaacgccgccgcggccgcaaccgcaactaccggatgtctcgccgcttcggccgttgccgccattgacgggtgagaggtgaggccggcctatattcgtggcgactcgcgagtgcgcacgtcagcacgtggaagacgactttgaccaagcgcgctgctgtggtcagtgtatacgtggactctgcgactgcggtggcaaaaggccggtctccatcgagatggagttgaggcccaggcattatcacatcccggcc More
CDS seq		atggagagcagcagcctgtggggcgttctcgggcaggcgtcgaacgtggcgcagctggtcggcgtcgacgcgcttgggctggtctccatggtggcgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctggagctcgccgagctgatgcggcgggaggccaccaggcggcccctcgagcagctccagggcgcgctgcggcggtgctacgcgctcgtcacggcgtgccaggaggaccgcggctacctccaccgcctgctcctcggcgcccggatggccgacgagctccgcgccgcgcagcacgagatcgacatgtacatccgcctcatccctctcatcgccctcgtcgatagcagcagcaatcgtcgagtcaaggctatggagggggcggctactgcagtcaaatacagttcaaatcgtcacatcaggtttccagcaagagtttcggggttcaccgaaatacatgttcaaggagatactaaattttgcaaagctggggaacaacctttaggaacagtgtacctgcaagaacagaaaatccttgacatcgaagaactggtggagctttgtactcgtacagaagagagctgcccaggattctcaaagttcgacttctctcagattttgcatgctacagataatttctcagagaatagcaatattggacggggtggatttgctacagtttacaagggtcagttgcccaatggacttgtggttgccatcaaaagactcgatgaatgtgcagtaaactttgatttcaacaatgaattgcagcttgcaagggttcagcacaataatctggttaagttactgggttggtgcatccatgggaaagaaaggattctggtgtatgagtttgcggacaggggtagcttgcaccattacatctttgacaaaatgagaaaatcattgttagactggcctcagcgattgaatataatcaaaggtGttgcagagggtcttgtttatctacacaagctttccattggtttcaaagctccggagtatgcatctcgaggagtttattcagtgaagacggatgtgtttagcttcggtatcttggttctagtgatcattagtggacgaaagaattccatactttataagcagagggatgctataggtgatcttgtacgggatgcttggcatatgtggagggacggaaggttacatgagcttgtagatccatcattaggacatgggtatgaacttgatcagataatgcggtgcactcaagtggcattgctctgtacccaggaagatccaacagttcggcccaccatgccggatgtcgccgcaatgctgcgttctggaagcgtgatcttattagatgatcctaagaagccttctgatctaagtaatgaagtcgaaaaaggtggtgacgagacatctacatgtatggatcaatcaagccagacaatagatataaccattacaagttcagctccagtgtcaactagggttcggatcgttataggccaagaggtaatttga More
Protein seq		MESSSLWGVLGQASNVAQLVGVDALGLVSMVAQAALAARRHRDACRRLGQHVELVGGLLRELELAELMRREATRRPLEQLQGALRRCYALVTACQEDRGYLHRLLLGARMADELRAAQHEIDMYIRLIPLIALVDSSSNRRVKAMEGAATAVKYSSNRHIRFPARVSGFTEIHVQGDTKFCKAGEQPLGTVYLQEQKILDIEELVELCTRTEESCPGFSKFDFSQILHATDNFSENSNIGRGGFATVYKGQLPNGLVVAIKRLDECAVNFDFNNELQLARVQHNNLVKLLGWCIHGKERILVYEFADRGSLHHYIFDKMRKSLLDWPQRLNIIKGVAEGLVYLHKLSIGFKAPEYASRGVYSVKTDVFSFGILVLVIISGRKNSILYKQRDAIGDLVRDAWHMWRDGRLHELVDPSLGHGYELDQIMRCTQVALLCTQEDPTVRPTMPDVAAMLRSGSVILLDDPKKPSDLSNEVEKGGDETSTCMDQSSQTIDITITSSAPVSTRVRIVIGQEVI
Function		Cysteine-rich receptor-like protein kinase 19 [UniProtKB/Swiss-Prot:Q8GWJ7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_06g0027040	OsKYG_06g0027040.01	Chr06	29990225	29995112	-	NAM
CDS seq	atggagagcagcagcctgtggggcgttctcgggcaggcgtcgaacgtggcgcagctggtcggcgtcgacgcgcttgggctggtctccatggtggcgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctggagctcgccgagctgatgcggcgggaggccaccaggcggcccctcgagcagctccagggcgcgctgcggcggtgctacgcgctcgtcacggcgtgccaggaggaccgcggctacctccaccgcctgctcctcggcgcccggatggccgacgagctccgcgccgcgcagcacgagatcgacatgtacatccgcctcatccctctcatcgccctcgtcgatagcagcagcaatcgtcgagtcaaggctatggagggggcggctactgcagtcaaatacagttcaaatcgtcacatcaggtttccagcaagagtttcggggttcaccgaaatacatgttcaaggagatactaaattttgcaaagctggggaacaacctttaggaacagtgtacctgcaagaacagaaaatccttgacatcgaagaactggtggagctttgtactcgtacagaagagagctgcccaggattctcaaagttcgacttctctcagattttgcatgctacagataatttctcagagaatagcaatattggacggggtggatttgctacagtttacaagggtcagttgcccaatggacttgtggttgccatcaaaagactcgatgaatgtgcagtaaactttgatttcaacaatgaattgcagcttgcaagggttcagcacaataatctggttaagttactgggttggtgcatccatgggaaagaaaggattctggtgtatgagtttgcggacaggggtagcttgcaccattacatctttgacaaaatgagaaaatcattgttagactggcctcagcgattgaatataatcaaaggtGttgcagagggtcttgtttatctacacaagctttccattggtttcaaagctccggagtatgcatctcgaggagtttattcagtgaagacggatgtgtttagcttcggtatcttggttctagtgatcattagtggacgaaagaattccatactttataagcagagggatgctataggtgatcttgtacgggatgcttggcatatgtggagggacggaaggttacatgagcttgtagatccatcattaggacatgggtatgaacttgatcagataatgcggtgcactcaagtggcattgctctgtacccaggaagatccaacagttcggcccaccatgccggatgtcgccgcaatgctgcgttctggaagcgtgatcttattagatgatcctaagaagccttctgatctaagtaatgaagtcgaaaaaggtggtgacgagacatctacatgtatggatcaatcaagccagacaatagatataaccattacaagttcagctccagtgtcaactagggttcggatcgttataggccaagaggtaatttga More
Protein seq	MESSSLWGVLGQASNVAQLVGVDALGLVSMVAQAALAARRHRDACRRLGQHVELVGGLLRELELAELMRREATRRPLEQLQGALRRCYALVTACQEDRGYLHRLLLGARMADELRAAQHEIDMYIRLIPLIALVDSSSNRRVKAMEGAATAVKYSSNRHIRFPARVSGFTEIHVQGDTKFCKAGEQPLGTVYLQEQKILDIEELVELCTRTEESCPGFSKFDFSQILHATDNFSENSNIGRGGFATVYKGQLPNGLVVAIKRLDECAVNFDFNNELQLARVQHNNLVKLLGWCIHGKERILVYEFADRGSLHHYIFDKMRKSLLDWPQRLNIIKGVAEGLVYLHKLSIGFKAPEYASRGVYSVKTDVFSFGILVLVIISGRKNSILYKQRDAIGDLVRDAWHMWRDGRLHELVDPSLGHGYELDQIMRCTQVALLCTQEDPTVRPTMPDVAAMLRSGSVILLDDPKKPSDLSNEVEKGGDETSTCMDQSSQTIDITITSSAPVSTRVRIVIGQEVI More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_06g0027040	OsKYG_06g0027040.02	Chr06	29990225	29995083	-	NAM
CDS seq	atggagagcagcagcctgtggggcgttctcgggcaggcgtcgaacgtggcgcagctggtcggcgtcgacgcgcttgggctggtctccatggtggcgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctggagctcgccgagctgatgcggcgggaggccaccaggcggcccctcgagcagctccagggcgcgctgcggcggtgctacgcgctcgtcacggcgtgccaggaggaccgcggctacctccaccgcctgctcctcggcgcccggatggccgacgagctccgcgccgcgcagcacgagatcgacatgtacatccgcctcatccctctcatcgccctcgtcgatagcagcagcaatcgtcgagtcaaggctatggagggggcggctactgcagtcaaatacagttcaaatctgtacctgcaagaacagaaaatccttgacatcgaagaactggtggagctttgtactcgtacagaagagagctgcccaggattctcaaagttcgacttctctcagattttgcatgctacagataatttctcagagaatagcaatattggacggggtggatttgctacagtttacaagggtcagttgcccaatggacttgtggttgccatcaaaagactcgatgaatgtgcagtaaactttgatttcaacaatgaattgcagcttgcaagggttcagcacaataatctggttaagttactgggttggtgcatccatgggaaagaaaggattctggtgtatgagtttgcggacaggggtagcttgcaccattacatctttgacaaaatgagaaaatcattgttagactggcctcagcgattgaatataatcaaaggtGttgcagagggtcttgtttatctacacaagctttccattggtttcaaagctccggagtatgcatctcgaggagtttattcagtgaagacggatgtgtttagcttcggtatcttggttctagtgatcattagtggacgaaagaattccatactttataagcagagggatgctataggtgatcttgtacgggatgcttggcatatgtggagggacggaaggttacatgagcttgtagatccatcattaggacatgggtatgaacttgatcagataatgcggtgcactcaagtggcattgctctgtacccaggaagatccaacagttcggcccaccatgccggatgtcgccgcaatgctgcgttctggaagcgtgatcttattagatgatcctaagaagccttctgatctaagtaatgaagtcgaaaaaggtggtgacgagacatctacatgtatggatcaatcaagccagacaatagatataaccattacaagttcagctccagtgtcaactagggttcggatcgttataggccaagaggtaatttga More
Protein seq	MESSSLWGVLGQASNVAQLVGVDALGLVSMVAQAALAARRHRDACRRLGQHVELVGGLLRELELAELMRREATRRPLEQLQGALRRCYALVTACQEDRGYLHRLLLGARMADELRAAQHEIDMYIRLIPLIALVDSSSNRRVKAMEGAATAVKYSSNLYLQEQKILDIEELVELCTRTEESCPGFSKFDFSQILHATDNFSENSNIGRGGFATVYKGQLPNGLVVAIKRLDECAVNFDFNNELQLARVQHNNLVKLLGWCIHGKERILVYEFADRGSLHHYIFDKMRKSLLDWPQRLNIIKGVAEGLVYLHKLSIGFKAPEYASRGVYSVKTDVFSFGILVLVIISGRKNSILYKQRDAIGDLVRDAWHMWRDGRLHELVDPSLGHGYELDQIMRCTQVALLCTQEDPTVRPTMPDVAAMLRSGSVILLDDPKKPSDLSNEVEKGGDETSTCMDQSSQTIDITITSSAPVSTRVRIVIGQEVI More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_06g0027040	OsKYG_06g0027040.03	Chr06	29990026	29995348	-	IsoSeq
CDS seq	atggcggcaacggccgaagcggcgagacatccggtagttgcggttgcggccgcggcggcgtttcgcggggagcggccatggagagcagcagcctgtggggcgttctcgggcaggcgtcgaacgtggcgcagctggtcggcgtcgacgcgcttgggctggtctccatggtggcgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctggagctcgccg More
Protein seq	MAATAEAARHPVVAVAAAAAFRGERPWRAAACGAFSGRRRTWRSWSASTRLGWSPWWRRRRWRRAATGTRAGGWGSTWSSSAACCGSWSSP

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr06	29994141	29994655	-	OsKYG_06g0027040.03	OsKYG_06g0027040.03,OsKYG_06g0027040.02,OsKYG_06g0027040.01	All
A3	Chr06	29991462	29991680	-	OsKYG_06g0027040.02,OsKYG_06g0027040.01	OsKYG_06g0027040.01,OsKYG_06g0027040.03,OsKYG_06g0027040.02	All
SE	Chr06	29991861	29994089	-	OsKYG_06g0027040.01	OsKYG_06g0027040.01,OsKYG_06g0027040.03	All
A5	Chr06	29990876	29991100	-	OsKYG_06g0027040.03	OsKYG_06g0027040.03,OsKYG_06g0027040.02,OsKYG_06g0027040.01	All

Expression

	Leaf	Root	Panicle
FPKM	0.000000	1.514300	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0689600	RBH	0.000000	0.000000	0.688255
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os06g47470	RBH	0.000000	0.000000	0.176559
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0689600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0027060	RBH	0.000000	6.370415	1.134198
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0026860	RBH	0.0	17.270178	0.625385
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0027050	RBH	0.0	5.193649	0.494734
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0026620	RBH	0.000000	0.169841	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0027090	RBH	0.000000	0.000000	2.096012
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0452000	RBH	0.3723155	47.3856795	2.3624275
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0026500	RBH	0.0	0.136337	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0434000	RBH	1.09214	18.1953095	2.868045
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0026970	RBH	0.000000	0.649071	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0027330	SBH	0.112782	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0026660	RBH	1.708287	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0027310	RBH	0.243869	3.777114	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0026920	RBH	0.000000	1.888936	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G026820	RBH	0.336151	3.718149	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0026910	RBH	0.000000	15.637341	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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