Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g47470 | OGI:06080870 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:28752549-28757410 | ||||||||
| Gene Symbol | RLCK214, OsRLCK214 | ||||||||||
| DNA seq | GCGTATAAATACACGTGAAGAACCATGTTATATCTTAATTTTTCTAGAGACTTCGGAAGGGTTACATATCCAACTTCTTCACAAGGGTCAGGCAAGGTGATTTATTGACTCCTGACTTTTCCTAAGAGTTCAGTGGACAGAAGAATGCAGTTTAATTATGTATAGGGGAGGACACGTGGCATAATTTCAGAGTAGCCCTAGAAAATTTTGTAGAGTGCCACGTGGCCCAATGGCAGCCTGGATGCTGCACCCTGAAATCGTTATTTAAGATGTGGGACTAGTAACTCAGAGAATCAGGAACATAAAAATAATGAGTGTTCGCTTACATCCCGTACAAGATCACCTATAGCATCCCTCTGCTTATAAAGTATGGAATTCTTTCGTCCACTAATGATCACTAGAACCAAGACACCGAAGCTAAACACATCCGTCTTCACTGAATAAACTCCTCGAGATGCATACTCCGGAGCTTTGAAACCACTGAATAAAGAAAGATTAAAACAGTCAAGTCAACACAAGTAAGGAAACTTATATTTATGACATGTCAGAAAACTCATACCTAGTGCCCACAACCCTTCTTGTATGTTCTTCTGCAACTTCTGAACTCAGTGAACTGGATGATCCAAAATCGGAAATCTTTGGGTTCATGTTATAATCTAAGAGGATGTTATCTGGTTTCAAATCCCTATGGACAATCCATAACATGGAAAGCTTGTGTAGATAAACAAGACCCTCTGCAACACCTTTGATTATATTCACTCGCTGAGGCCAGTCTAACAATGATTTTCTCATTTTGTCTGAAAAAAATTGAAACAATAAATGTCATTTTTTATGTAAAATAAGTGCAATTTCTATGCTTATCTAAATGAAATTAAATTTTCTTTAAAACAAATTATTGGAAGAAAAACCAACTCAGTGAAATGGGAGTTGTTCCACTGTGCAAACATACCAAAGATGTAATGTTGCAAGCTACCCCTGTCCGCAAACTCATACACCAGAATCCTTTCTTTCCCATGGATGCACCAACCCAGTAACTTAACCAGATTATTGTGCTGAACCCTTGCAAGCTGCAATTCATTGTTGAAATCAAAGTTTACTGCACATTCATCGAGTCTTTTGATGGCAACCACAAGTCCATTGGGCAACTGACCCTGCCATATTTACTTAAGAGTTTAGACAATATTCTCTCAAAAGATATCAGCAATTCAGCATGCATCTCGTTGGGAATACAAGGACGATAGGCATTCACATGTTAATTTCATAATGTTGAGCCTGTACAGTTCTCTCCTTTCTTAATATAAAACCAGCAAAGCTGGCATAGGTTTCAAAAAAAATTTCATAATGTTGAGGGGTTATAATTACCTTGTAAACTGTAGCAAATCCACCCCGTCCAATATTGCTATTCTCTGAGAAATTATCTGTAGCATGCACAATCTGAGAGAAGTCGAACTTTGAGAATCCTGGGCAGCTCTCTTCTGTACGAGTACAAAGCTCCACCAGTTCTTCGATGTCAAGGATTTTCTGTTCTTGCAGGTACACTGTTCCTAAGCCATTGAAAATCCATCCTTATCACCAATGGAATATCAATCAACATTAATATAACTTAAAAATATCAAATATCATGATAATGCTTGAGCTTCTTTGTATGATGATCAGGGATCACCAGTTCATCATAATTGGTAGATTCCAAATGCAAGAGTGCTCACTTTGATAATAAATGGACTTCTAATAAAGGATATCATGCATTATATATAATCATGTTGTTGTATCACTTTAATAATGTGATTACAAAACAAGCTAAAATTTTAAAATAATTTAGAAAACCAGAACTGCATTTGATGTTCATTATTTCTATCTTAACATATGTTTGTCCCGCTATCTAGGTCCCTTCCAACTAGGGGTGGGCGTTCGGTTTCCTCAGATGTTGCGGTTCAGTTTCTTTGGTTTTTTGGAAATTTGGTTCTCAACAAAACCAAGCCGAAGAGTTTGTAACAAAAACAATAAACCGCGCCGAACAAACCAAAGTTATTCGGTTTGGTTTGTCGGTTTACCGAGTAAGCCAAAAAAAGTACATACATGTTGTGCCATGCCGCAGGCTGAAGTCCTGCAAGCAGCATTGCAAGGCCACGGTGGTAGTCAGATGGGCTGGATAGGATAGGGTATGGACTGTAGGGTTAATGAGAGATGGATGGTATTAAACTATTAATGGACTTTTCCATTGGTCAAAGGCCTGGACATTGTGGTTTTCAAGTAGGGGAATGGGATCATAGAGATTGATCGGTTTGTACGGATTCTTCGGTTGTTAGAGATGAGGAACCGATGGAAAAGCCGAAGACCGATCTACGGGAGAAATAAAACCGAAGGAGAAACCGACTACCGAGAAAACTGATAGTTCGGTTCGGTTCGGCCTTCGGTTTTCAGTGATTTTATGCCCACCCCTACTTCCAACTGTGTGTGGTGGCCCATGATACCAATGTCAAAAATATAATATGCAGTATTTTATTCTATCTGGTTGAGATATATCAAAATAATGGATAAGCAAAAGAGTACTGGTACAAGCACATATGCACATATAAACAGTTTGGACATCGTTGATTCAAATAGGATTGAAAAGAAACCTCTGCCTATTGATTTTGATATTTGAGTAACTACTTACAAGGAATTCATAAAATAATTACATAGATACCTAAAGGTTGTTCCCCAGCATTGCAAAGTTTAGTATCTCCTTGAACATGTATTTCGGTGAACCCCGAAACTCTTGCTGGAAACCTAAAGGTAGAAAATTTTTGCCATTATTGTACTAAAACCATAAATGATTTTAGCAAAGGAAAAGAAGGGACAATTTCATATGATAGGGGTGAATAAATGAAGACCTGATGGTAGGGCAACATGACTAGAGGAGCTTCAATCATTTCGTTTTCAAGAAGATACAAAAAAAAAAGAGTCATGCTACTGTGCGTAAAAATGTTAGAAATTTATTGAAACATCAATGCTGAAACTTAAATAAACTCGTGTTTTCATTTCAAGTTGACTGAATTATTTTTTTGGCGAGATGGAGAGCAGGAAAGAAGGGCTAGTTTACAGAAGTTCTCTGTCTGCTTTATCTTTATCTCAAAAAATCCCCCTTATTATTGAAGAAAACTTCTTTTGGAGATAGAATTTTGGTCATGAAATAATATTGTATTCTTCTCCTTCCAAATATTTGGAGAGATGTAGATCACAAACCAAGCCACTGAATTGTCTCTCTCATAGTCCAATTGCACCTTGCAGTAAGCTATGTCAACATTCTGTGAGATTATTATCGAAATCACGAGGCTTGTCTGCTGACCTGACAGTGCAAGTTAGGATGACGGACCAAGCTTCCTAGGTTGATCTTCCACGTCTTAAATTTCAGAGGACATGTGAGGACATCACAGGTCAGTCCAAATGGCCCACCATATAGTTTTGTCCATGATTTGGTCATAGCAGAATAACTGGTAGACAAGTTGGCCTGGGCATTCAAAGTTCAAACACAACATATCTGAAGGGTACACTTTATCTAAAGTTTGTAGCAACACGTGTCACATAGCTCCCAACACTGATCTGCTTGAACTGCTTCTATTCTATGCCTCTATGGTCTAAAATCAAACTTTAGTCATTAGTCAACCAAATTAATCCAGCTGTTAGCATCAACAATACAACCGTGCTTCACCTTCCATACTGCCATTTTGTCAAAATAACATGATAAAATGTTGGAACCAATATATGAGAATGGTACGTTATGTAAACAGCTGCGTATTGAAAATTGTCTTACCTGATGTGACGATTTGAACTGTATTTGATTGCAGTAGCCGCCCCATCCATAGCCTGCTAAACAAAGATATGGAAAACGATGGGTATCATTTTGATATACAGTTGATCAGGACAATGCAAGTTCCATGGTTCATATTAGCCTTCTTCTTGAGCAGTTTTTTTTTTTAATTTTTGTTCAACAAGGAGCAGATTTGTTGTATCACCTTGCACAAATATAAGTTTGATACTACGAATGGAAACTGAATTTTAAATTGGCCGTAGCTAACTGCAGTTGGATTACAGTTTCAGAATTTCAGACACCAGGTTCACCTTAACAGACTTGTTCAATCGGACCACTGCTTCTACCTACTACCGCTAAGAATTTTTCTCAAACACGCCACGGGCTTCGATTCCTTATTCTAACGAGCGTCAATATTGAGAATTGAGATGAACACAACCGTACAAACAACAGGATTTCACCGAAGTACTACTACTTTTTTCGCGGGCTGAATCACTGAATTAGTACTACTAGTACTAACTACTAAGAACTGTAAATCTGTACTAATCATCAAGGCGAAACAATGTTTACCTTGTCTCGATGATTGCTGCTGCTGTCGACGAGGGCGATGAGAGGGATGAGGCGGATGTACATGTCGATCTCGTGCTGCGCGGCGCGGAGCTCGTCGGCCATCCGGGCGCCGAGGAGCAGGCGGTGGAGGTAGCCGCCGTCCTCCTGGCACGCCGTGGCGAGCGCGTAGCACCGCCGCAGCGCGCCCTGGAGCTGCTCGAGGGGCCGCCTGGTGGCCTCCCGCCGCATCAGCTCGGCGAGCTCCAGCTCCCGTAGCAGGCCGCCGACGAGCTCCGCGTGCTGCCCCAGCCGCCGGCACGCGTCCCGGTGGCGGCGCGCCGCCAGCGCCGCCTGCGCCACCATGGAGACCAGCCCGAGCGCGTCGACGCCGACCAGCTGCGCCACGTTCGACGCCTGCCCGAGCACGCCCCACAGGCTGCTGCTCTCCATGGCGTTGCGCTCCCCGCGCAACGCCGCCGCGGCCGCAACTACCCGATGTCTCGCCGCTTCGGCCGTTGCCGCC
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| CDS seq | ATGGAGAGCAGCAGCCTGTGGGGCGTGCTCGGGCAGGCGTCGAACGTGGCGCAGCTGGTCGGCGTCGACGCGCTCGGGCTGGTCTCCATGGTGGCGCAGGCGGCGCTGGCGGCGCGCCGCCACCGGGACGCGTGCCGGCGGCTGGGGCAGCACGCGGAGCTCGTCGGCGGCCTGCTACGGGAGCTGGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCAGCTCCAGGGCGCGCTGCGGCGGTGCTACGCGCTCGCCACGGCGTGCCAGGAGGACGGCGGCTACCTCCACCGCCTGCTCCTCGGCGCCCGGATGGCCGACGAGCTCCGCGCCGCGCAGCACGAGATCGACATGTACATCCGCCTCATCCCTCTCATCGCCCTCGTCGACAGCAGCAGCAATCATCGAGACAAGGCTATGGATGGGGCGGCTACTGCAATCAAATACAGTTCAAATCGTCACATCAGGTTTCCAGCAAGAGTTTCGGGGTTCACCGAAATACATGTTCAAGGAGATACTAAACTTTGCAATGCTGGGGAACAACCTTTAGGAACAGTGTACCTGCAAGAACAGAAAATCCTTGACATCGAAGAACTGGTGGAGCTTTGTACTCGTACAGAAGAGAGCTGCCCAGGATTCTCAAAGTTCGACTTCTCTCAGATTGTGCATGCTACAGATAATTTCTCAGAGAATAGCAATATTGGACGGGGTGGATTTGCTACAGTTTACAAGGGTCAGTTGCCCAATGGACTTGTGGTTGCCATCAAAAGACTCGATGAATGTGCAGTAAACTTTGATTTCAACAATGAATTGCAGCTTGCAAGGGTTCAGCACAATAATCTGGTTAAGTTACTGGGTTGGTGCATCCATGGGAAAGAAAGGATTCTGGTGTATGAGTTTGCGGACAGGGGTAGCTTGCAACATTACATCTTTGACAAAATGAGAAAATCATTGTTAGACTGGCCTCAGCGAGTGAATATAATCAAAGGTGTTGCAGAGGGTCTTGTTTATCTACACAAGCTTTCCATGTTATGGATTGTCCATAGGGATTTGAAACCAGATAACATCCTCTTAGATTATAACATGAACCCAAAGATTTCCGATTTTGGATCATCCAGTTCACTGAGTTCAGAAGTTGCAGAAGAACATACAAGAAGGGTTGTGGGCACTAGTGGTTTCAAAGCTCCGGAGTATGCATCTCGAGGAGTTTATTCAGTGAAGACGGATGTGTTTAGCTTCGGTGTCTTGGTTCTAGTGATCATTAGTGGACGAAAGAATTCCATACTTTATAAGCAGAGGGATGCTATAGGTGATCTTGTACGGGATGTAAGCGAACACTCATTATTTTTATGTTCCTGA
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| Protein seq | MESSSLWGVLGQASNVAQLVGVDALGLVSMVAQAALAARRHRDACRRLGQHAELVGGLLRELELAELMRREATRRPLEQLQGALRRCYALATACQEDGGYLHRLLLGARMADELRAAQHEIDMYIRLIPLIALVDSSSNHRDKAMDGAATAIKYSSNRHIRFPARVSGFTEIHVQGDTKLCNAGEQPLGTVYLQEQKILDIEELVELCTRTEESCPGFSKFDFSQIVHATDNFSENSNIGRGGFATVYKGQLPNGLVVAIKRLDECAVNFDFNNELQLARVQHNNLVKLLGWCIHGKERILVYEFADRGSLQHYIFDKMRKSLLDWPQRVNIIKGVAEGLVYLHKLSMLWIVHRDLKPDNILLDYNMNPKISDFGSSSSLSSEVAEEHTRRVVGTSGFKAPEYASRGVYSVKTDVFSFGVLVLVIISGRKNSILYKQRDAIGDLVRDVSEHSLFLCS |
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| Function | Cysteine-rich receptor-like protein kinase 5 [UniProtKB/Swiss-Prot:Q9C5S8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47470 | LOC_Os06g47470.1 | Chr06 | 28752549 | 28757410 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGCAGCAGCCTGTGGGGCGTGCTCGGGCAGGCGTCGAACGTGGCGCAGCTGGTCGGCGTCGACGCGCTCGGGCTGGTCTCCATGGTGGCGCAGGCGGCGCTGGCGGCGCGCCGCCACCGGGACGCGTGCCGGCGGCTGGGGCAGCACGCGGAGCTCGTCGGCGGCCTGCTACGGGAGCTGGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCAGCTCCAGGGCGCGCTGCGGCGGTGCTACGCGCTCGCCACGGCGTGCCAGGAGGACGGCGGCTACCTCCACCGCCTGCTCCTCGGCGCCCGGATGGCCGACGAGCTCCGCGCCGCGCAGCACGAGATCGACATGTACATCCGCCTCATCCCTCTCATCGCCCTCGTCGACAGCAGCAGCAATCATCGAGACAAGGCTATGGATGGGGCGGCTACTGCAATCAAATACAGTTCAAATCGTCACATCAGGTTTCCAGCAAGAGTTTCGGGGTTCACCGAAATACATGTTCAAGGAGATACTAAACTTTGCAATGCTGGGGAACAACCTTTAGGAACAGTGTACCTGCAAGAACAGAAAATCCTTGACATCGAAGAACTGGTGGAGCTTTGTACTCGTACAGAAGAGAGCTGCCCAGGATTCTCAAAGTTCGACTTCTCTCAGATTGTGCATGCTACAGATAATTTCTCAGAGAATAGCAATATTGGACGGGGTGGATTTGCTACAGTTTACAAGGGTCAGTTGCCCAATGGACTTGTGGTTGCCATCAAAAGACTCGATGAATGTGCAGTAAACTTTGATTTCAACAATGAATTGCAGCTTGCAAGGGTTCAGCACAATAATCTGGTTAAGTTACTGGGTTGGTGCATCCATGGGAAAGAAAGGATTCTGGTGTATGAGTTTGCGGACAGGGGTAGCTTGCAACATTACATCTTTGACAAAATGAGAAAATCATTGTTAGACTGGCCTCAGCGAGTGAATATAATCAAAGGTGTTGCAGAGGGTCTTGTTTATCTACACAAGCTTTCCATGTTATGGATTGTCCATAGGGATTTGAAACCAGATAACATCCTCTTAGATTATAACATGAACCCAAAGATTTCCGATTTTGGATCATCCAGTTCACTGAGTTCAGAAGTTGCAGAAGAACATACAAGAAGGGTTGTGGGCACTAGTGGTTTCAAAGCTCCGGAGTATGCATCTCGAGGAGTTTATTCAGTGAAGACGGATGTGTTTAGCTTCGGTGTCTTGGTTCTAGTGATCATTAGTGGACGAAAGAATTCCATACTTTATAAGCAGAGGGATGCTATAGGTGATCTTGTACGGGATGTAAGCGAACACTCATTATTTTTATGTTCCTGA
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| Protein seq | MESSSLWGVLGQASNVAQLVGVDALGLVSMVAQAALAARRHRDACRRLGQHAELVGGLLRELELAELMRREATRRPLEQLQGALRRCYALATACQEDGGYLHRLLLGARMADELRAAQHEIDMYIRLIPLIALVDSSSNHRDKAMDGAATAIKYSSNRHIRFPARVSGFTEIHVQGDTKLCNAGEQPLGTVYLQEQKILDIEELVELCTRTEESCPGFSKFDFSQIVHATDNFSENSNIGRGGFATVYKGQLPNGLVVAIKRLDECAVNFDFNNELQLARVQHNNLVKLLGWCIHGKERILVYEFADRGSLQHYIFDKMRKSLLDWPQRVNIIKGVAEGLVYLHKLSMLWIVHRDLKPDNILLDYNMNPKISDFGSSSSLSSEVAEEHTRRVVGTSGFKAPEYASRGVYSVKTDVFSFGVLVLVIISGRKNSILYKQRDAIGDLVRDVSEHSLFLCS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.176559 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0689600 | RBH | 0.000000 | 0.000000 | 0.688255 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0689600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027060 | RBH | 0.000000 | 6.370415 | 1.134198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026860 | RBH | 0.0 | 17.270178 | 0.625385 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027050 | RBH | 0.0 | 5.193649 | 0.494734 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026620 | RBH | 0.000000 | 0.169841 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027350 | SBH | 1.816901 | 6.939420 | 6.334772 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0452000 | RBH | 0.3723155 | 47.3856795 | 2.3624275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026750 | SBH | 0.216433 | 0.169879 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0434000 | RBH | 1.09214 | 18.1953095 | 2.868045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026970 | RBH | 0.000000 | 0.649071 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027040 | RBH | 0.000000 | 1.514300 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026910 | SBH | 0.000000 | 13.318043 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027310 | RBH | 0.243869 | 3.777114 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027160 | SBH | 0.000000 | 4.111788 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026820 | RBH | 0.336151 | 3.718149 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026910 | RBH | 0.000000 | 15.637341 | 0.000000 |
